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Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

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USGS2026

Multiple machine-learning estimation of groundwater levels and trends for the regional Mississippi River Valley alluvial aquifer

The Mississippi River Valley alluvial aquifer provides irrigation, public, and domestic water supplies across the south-central United States. Declining groundwater levels require improved characterization of changing conditions. Traditional potentiometric-surface mapping does not use all available water-level data or quantify uncertainty. To address these limitations, we developed a data-driven multiple machine-learning (MML) framework delivered through two open-source R packages. The covMRVAgen1 software assembles covariates to 155,960 monthly groundwater levels from 57,695 wells; the mmlMRVAgen1 software trains Cubist and Random Forest models, blends them, and makes 1-kilometer gridded predictions of monthly potentiometric surfaces for the period January 1980–December 2022. The MML approach provides a methodological foundation for region-scale spatiotemporal groundwater prediction and uncertainty quantification, generating 90-percent prediction limits with appropriate empirical coverage. Model performance is acceptable, with a root-mean-square error of about 4.2 feet, standard deviation of 24.82 feet, and a normalized Nash–Sutcliffe efficiency of 0.973.

Arkansas, Illinois, Louisiana, Mississippi, Missou↗

USGS2025

Evaluation of daily stream temperature predictions (1979-2021) across the contiguous United States using a spatiotemporal aware machine learning algorithm

Stream temperature controls a variety of physical and biological processes that affect ecosystems, human health, and economic activities. We used 42 years (1979–2021) of data to predict daily summary statistics of stream temperature across >50,000 stream reaches in the contiguous United States using a recurrent graph convolution network. We comprehensively documented the performance – both across all reaches and by stream type (e.g., reservoir or groundwater influence) – as a baseline for future improvement. The model showed reach-level RMSE of <2 °C with 90 % prediction intervals that contain 90.7 % of observations. We also assessed how the model captured variability in ecologically relevant metrics (e.g., R 2 for annual 7-day maximum = 0.76; R 2 for days exceeding 25 °C = 0.75). This model does not outperform state-of-the-art machine learning efforts (e.g., RMSE ≤1.5 °C) due to a limited input set but does provide the most spatially complete modeling to date to support water availability assessments.

contiguous United States↗

USGS2024

Self-guided decision support groundwater modelling with Python

The GMDSI tutorial notebooks repository provides learners with a comprehensive set of tutorials for self-guided training on decision-support groundwater modelling using Python-based tools. Although targeted at groundwater modelling, they are based around model-agnostic tools and readily transferable to other environmental modelling workflows. The tutorials are divided into three parts. The first covers fundamental theoretical concepts. These are intended as background reading for reference on an as-needed basis. Tutorials in the second part introduce learners to some of the core concepts parameter estimation in a groundwater modelling context, as well as providing a gentle introduction to the PEST, PEST++ and pyEMU software. Lastly, the third part demonstrates how to implement highly-parameterized applied decision-support modelling workflows. The tutorials aim to provide examples of both “how to use” the software as well as “how to think” about using the software. A key advantage to using notebooks in this context is that the workflows described run the same code as practitioners would run on a large-scale real- world application. Using a small synthetic model facilitates rapid progression through the workflow.

Journal of Open Source Education↗

USGS2026

Wavelet Inversion for SliP (WISP): Open-source earthquake slip modeling software

Models of the spatiotemporal evolution of earthquake slip, termed finite-fault models, are a critical component of rapid earthquake and tsunami response, earthquake forecasting, seismic ground-motion estimates, and studies of earthquake kinematics. Here, we detail a newly released finite-fault modeling software, Wavelet Inversion for SliP (WISP), in use at the U.S. Geological Survey’s National Earthquake Information Center (NEIC) and available to the public. WISP version 1.1.0 allows inversion of teleseismic body and surface waves, as well as local strong-motion, static and dynamic Global Navigation Satellite System, and satellite imagery (e.g., Interferometric Synthetic Aperture Radar) observations on single or multiple planar fault segments. The software is used in NEIC rapid response of earthquakes M w ≥ 7, generally resulting in a published model within the first few hours after the event origin time. The rupture location and dimensions are then used as inputs to downstream products to estimate earthquake shaking, predict loss, and model the likelihood of secondary hazards, namely landslides and liquefaction. WISP is also used in research studies to evaluate the characteristics of complex ruptures including multifault ruptures and earthquake doublets, among others. The WISP version 1.1.0 software release is composed of Python-wrapped FORTRAN code to accomplish the inversion procedure. A simple command line interface facilitates ease of use even for those with only a cursory knowledge of Python scripting. WISP version 1.1.0 includes a Jupyter Notebook tutorial demonstrating use of the software for modeling the 2015 M w 8.3 Illapel, Chile, earthquake. In parallel with the tutorial, we demonstrate the typical usage of the WISP software using the M w 8.3 Illapel earthquake example here.

Seismological Research Letters↗

USGS2025

Using the D-Claw software package to model lahars in the Middle Fork Nooksack River drainage and beyond, Mount Baker, Washington

Lahars, or volcanic mudflows, are the most hazardous eruption-related phenomena that will affect communities living along rivers that originate on Mount Baker. In the past 15,000 years, the largest lahars from Mount Baker have affected the Middle Fork Nooksack River drainage and beyond. Here we use the physics-based D-Claw software package to model nine lahar scenarios that are initiated as water-saturated landslides between Sherman Crater and the Roman Wall on the Mount Baker edifice and flow down the Middle Fork Nooksack River. The scenarios range in volume from 1 to 260 million cubic meters and have an initial hydraulic permeability from 10 −12 to 10 −10 meters squared. Model output includes data such as flow depth, velocity, runout distance, area inundated, arrival time, and sediment concentration as well as information that allows scientists to calculate other important hydrologic characteristics such as lahar discharge. These data are important to officials who have the responsibility to plan for, or take mitigation measures against, future Mount Baker lahars. To check the validity of the D-Claw results, we compare the scenarios to known geologic information. We also compare D-Claw results with empirical models that have been used in the past to determine potential inundation areas, runout distances, and arrival times. These comparisons highlight similarities and differences between empirical and physics-based models. We also present D-Claw scenario-based animations to help scientists, officials, and lay people alike to visualize how future lahars could affect communities.

Washington↗

USGS2026

Software to support remote sensing of river discharge based on critical flow theory

Water resource management requires accurate observations of streamflow but standard field methods for measuring river discharge ( Q ) are costly and can be hazardous for equipment and personnel. Remote sensing has become a viable alternative, but many image-based techniques require field data for calibration and depth and velocity can seldom be mapped with a single sensor. A new approach based on critical flow theory, in contrast, allows both of these attributes to be inferred from readily available image data. This technique only pertains to sites with standing waves, called undular hydraulic jumps (UHJs), but a recent investigation demonstrated its potential to provide accurate discharge estimates. This paper introduces software designed to facilitate Inferring Q from UHJs Identified in River Images (InQUIRI). The package includes modules for retrieving data from image servers, making the measurements of wavelength and width required to calculate discharge, inferring a representative wavelength from a profile digitized along a wave train, combining multiple estimates to obtain an ensemble median discharge, and assessing accuracy via comparison to gage records from the U.S. Geological Survey. By making these steps easier to implement, InQUIRI enables users to apply the workflow to a variety of UHJ-containing images. Accumulating more case studies, some successful and others less so, would help constrain the range of applicability of the critical flow approach and foster development of refined guidelines for selecting and measuring waves. The software described herein could play an important role in promoting informed use of this new technique for non-contact streamflow measurement.

Arizona, Colorado, New Mexico, Utah↗

USGS2025

Assessing nonpoint-source uranium pollution in an irrigated stream-aquifer system

Uranium (U) in rocks and soils of arid and semi-arid environments can be mobilized by irrigation and fertilization, posing environmental and health risks. Elevated U, along with selenium (Se) and nitrate (NO 3 ) co-constituents, necessitates careful monitoring and management. We developed a distributed-parameter numerical model to assess U pollution in an irrigated stream-aquifer system, applying it to a 552 km 2 region in Colorado's Lower Arkansas River Valley (LARV) over 14 years. A MODFLOW model, describing groundwater and stream flow, was coupled with an RT3D-OTIS model to portray reactive U transport. Calibration using the PESTPP-iES iterative ensemble smoother (iES) software indicated good agreement with observed U concentrations. The model revealed substantial and variable U levels across the LARV, highlighting potential hotspots and possible contributing factors, such as geological composition of the bedrock and near-surface shale and aquifer sediments derived from them, irrigation practices, and riparian landscape. U levels exceed the chronic standard (85th percentile = 30 μg/L, set by the US Environmental Protection Agency), which is the permissible regulatory threshold, in groundwater across 44 % of the region and along the river by an average factor of 2.9. Simulated average U concentrations in the non-riparian aquifer and river are 124 μg/L and 60 μg/L, respectively, compared with 112 μg/L and 62 μg/L for measured values. The average 85th percentile U concentration is 222 μg/L in the aquifer and 82 μg/L in the river. Average simulated U mass loading to the river is 0.17 kg/day per km, compared to an estimated 0.23 kg/day per km. Findings provide a baseline for comparing future simulated outcomes of alternative best management practices (BMPs) for U pollution mitigation and offer a methodology applicable to other irrigated regions.

Colorado↗

USGS2024

Automated, near real-time ground-motion processing at the U.S. Geological Survey

We describe automated ground‐motion processing software named gmprocess that has been developed at the U.S. Geological Survey (USGS) in support of near‐real‐time earthquake hazard products. Because of the open‐source development process, this software has benefitted from the involvement and contributions of a broad community and has been used for a wider range of applications than was initially envisioned. Here, we give an overview and introduction to the software, including how it has leveraged other open‐source libraries. We highlight some key features that gmprocess provides, compare response spectra calculated with the automated processing approach of gmprocess to the response spectra provided by the Next Generation Attenuation projects, and summarize projects that have utilized gmprocess. These use‐cases demonstrate that this software development effort has been successfully leveraged in earthquake research activities both within and outside the USGS.

Seismological Research Letters↗

USGS2026

3D semantic mapping of surface geological features

Semantic mapping in 3D is fundamental to a wide range of geoscientific studies and applications, including geomorphology, hazard assessment, and environmental monitoring. However, automatically segmenting geological features from large-scale photogrammetric datasets remains a significant challenge. We present a methodology to address this gap. Using overlapping images collected over environments of interest, Structure-from-Motion (SfM) produces georeferenced point clouds and estimates camera poses. Existing large vision models, such as Segment Anything Model, segment objects in the images, generating pixel-segmentation associations. To produce pixel-point associations, we project the points back onto the camera image planes. As objects are independently segmented across multiple images with different perspectives, we develop a segmentation mosaicking algorithm to build probabilistic point-segmentation associations that combines the pixel-segmentation associations and pixel-point associations. Our methodology is validated using both synthetic data generated by Kubric and real-world UAV-SfM data. The implementation is designed to be compatible with existing SfM software, including Agisoft and OpenDroneMap, for photogrammetry mapping in geoscience studies. As a case study, we apply our method to the semantic mapping of precariously balanced rocks (PBRs), which provide upper-bound constraints on historical ground motion shaking intensity. To support object-level identification of PBRs, we additionally integrated Grounding DINO, enabling text-prompted segmentation of features of interest within UAV imagery. This case study demonstrates the effectiveness of our method in generating a 3D semantic map of PBRs, enabling spatial distribution of PBR fragility for earthquake hazard analysis.

Computers & Geosciences↗

USGS2026

Digitizer Suite: The Albuquerque Seismological Laboratory Digitizer Testing Suite

Laboratory testing of digitizers and seismometers helps ensure that prior to deployment the instrumentation can produce high quality data and is operating within specifications. In this work we detail the software package called: the Albuquerque Seismological Laboratory (ASL) Digitizer Test Suite. This Java software package provides several algorithms to verify various performance parameters of digitizers commonly used for recording analog seismic instruments. The goal of these tests is not to be exhaustive, but to identify common failures that could compromise the integrity of seismic data being recorded on the digitizer. For example, Sandia National Laboratories (e.g., Slad and Merchant, 2018) routinely do comprehensive testing of digitizers for various monitoring missions. While these tests reports are valuable for comprehensively characterizing a recording system, it would be resource intensive to conduct such tests on every seismic recorder used in a network. We focus on tests that include ways to estimate the sensitivity, timing, self-noise, and clip-level of the digitizer, as well as the fidelity of the signal being recorded. The software is publicly available and provides a way for the community to verify the integrity of a digitizer using a minimum amount of outside equipment.

Seismological Research Letters↗

USGS2025

ARCHI: A new R package for automated imputation of regionally correlated hydrologic records

Missing data in hydrological records can limit resource assessment, process understanding, and predictive modeling. Here, we present ARCHI (Automated Regional Correlation Analysis for Hydrologic Record Imputation), a new, open-source software package in R designed to aggregate, impute, cluster, and visualize regionally correlated hydrologic records. ARCHI imputes missing data in “target” records by linear regression using more complete “reference” records as predictors. Automated imputation is implemented using a novel, iterative algorithm that allows each site to be considered a target or reference for regression, growing the pool of complete references with each imputed record until viable gap-filling ceases. Users can limit artifacts from spurious correlations by specifying model-acceptance criteria and applying geospatial, correlation, and group-based filters to control reference selection. ARCHI provides additional functions for visualizing results, clustering records with similar correlation structures, evaluating holdout data, and interactive parameterization with an accessible and intuitive graphical user interface (GUI). This methods brief provides an overview of the ARCHI package, modeling guidelines, and benchmarking on two regional groundwater-level datasets from the Central Valley, CA and Long Island, NY. We evaluate ARCHI alongside widely used multivariate imputation software to highlight and contextualize its computational efficiency, imputation accuracy, and model transparency when applied to large, groundwater-level datasets.

California, New York↗

USGS2026

CRESCENT earthquake dynamic rupture, earthquake cycle, and tsunami code verification platform

Physics-based simulations are critical for understanding natural hazards. The increasing complexity of numerical codes requires benchmark exercises to verify that different computational methods yield consistent results when solving the same governing equations. Here, we present an open-access web platform designed for the verification of earthquake dynamic rupture, seismic cycle, and tsunami simulations. The platform architecture utilizes a modular, serverless backend on Amazon Web Services (AWS) to provide scalable file processing and visualization. A lightweight static web application provides a secure interface for uploading and managing results, while the browser-based data visualization enables interactive analysis of time series and surface grid data. By using structured JavaScript Object Notation (JSON) text files to define benchmark structures, the system remains fully extensible, allowing the addition of new scenarios without modifying the underlying software logic. The platform hosts the "The Tsunami Problem Versions" (TTPV) 1 & 2, two benchmarks for 3D fully coupled earthquake dynamic rupture and tsunami generation, and provides a framework for earthquake cycle models. This community resource aims to build trust in numerical simulations and facilitate long-term collaborative code verification as modeling software continues to evolve.

Seismica↗

USGS2026

Is satellite-derived bathymetry vertical accuracy dependent on satellite mission and processing method?

This research focusses on three satellite-derived bathymetry methods and optical satellite instruments: (1) a stereo photogrammetry bathymetry module (SaTSeaD) developed for the NASA Ames stereo pipeline open-source software (version 3.6.0) using stereo WorldView data; (2) physics-based radiative transfer equations (PBSDB) using Landsat data; and (3) a modified composite band-ratio method for Sentinel-2 (SatBathy) with an initial simplified calibration, followed by a more rigorous linear regression against in situ bathymetry data. All methods were tested in three different areas with different geological and environmental conditions, Cabo Rojo, Puerto Rico; Key West, Florida; and Cocos Lagoon and Achang Flat Reef Preserve, Guam. It is demonstrated that all satellite derived bathymetry (SDB) methods have increased accuracy when the results are aligned with higher-accuracy ICESat-2 ATL24 track bathymetry data using the iterative closest point (ICP). SDB vertical accuracy depends more on location characteristics than the method or optical satellite instrument used. All error metrics considered (mean absolute error, median absolute deviation, and root mean square error) can be less than 5% of the maximum bathymetry depth penetration for at least one method, although not necessarily for the same method for all sites. The SDB error distribution tends to be bimodal irrespective of method, satellite instrument, alignment, site, or maximum bathymetry depth, leading to the potential ineffectiveness of traditional error metrics, such as the root mean square error. However, our analysis demonstrates that performing detrending where possible can achieve an error distribution as close to normality as possible for which error metrics are more diagnostic.

Florida↗

USGS2025

Grammar to graph—An approach for semantic transformation of annotations to triples

Data annotation is the process of labeling data to show the outcome that a related data model should predict. In this study, annotation data were transformed into semantic graph triples, mainly for use with the Resource Description Framework (RDF), a type of entity-relationship-attribute data model for graph databases. The transformation of annotation data to semantic graph triples provides complex linguistic meaning with data handling advantages such as reduced data storage needs, improved logical specification of relations between objects, and reusable classes and properties that support logic and inference. A grammar-based framework in graph form supports user questions and queries. The words defining approximately 334 topographic feature types compiled by the U.S. Geological Survey were tokenized as units of analysis and grouped by part of speech. Their dependency relations were identified for this study using natural language processing libraries. Dependency concepts are used as structured semantic relations among part-of-speech classes. Tokens, units equivalent to words, form instances of classes and were quantified within a tabular output format using PostgreSQL data storage software. Table data were logically aligned as triples following a mapping file and stored with an ontology file using Ontop virtual triplestore software. A grammar ontology schema for the data was synchronized to match queries whose results validated the graph’s structure. The text analysis produced 8 part-of-speech classes of content words for object representations and 4 classes of function words for operational applications. Dependency relations formed 27 ontology properties for topographic subgraph structures. Token occurrences shaped overall ontology salience and formed a lexicon of syntactic terms for subgraph objects and properties. The schema ontology of class and property population shapes formed the lexicon of English terms. SPARQL Protocol and RDF Query Language (SPARQL) was used with the lexicon to conform data to RDF guidelines. This study confirms the hypothesis that although linguistic logic varies from description logic, its approximation applies to ontology design. Property and query use case patterns extracted from the analysis support queries concerning complex topographic relations and patterns normally embedded within text definitions. The method used in this study could be applied to text forms in other domains, such as survey notes.

Scientific Investigations Report↗

USGS2025

Simulation of the impacts of projected climate change on groundwater resources in the urban, semiarid Yucaipa Valley watershed, southern California using an integrated hydrologic model

Managing water resources in semiarid watersheds is challenging due to limited supply and uncertain future climate conditions. This paper examines the impact of future climate changes on an urban watershed in southern California using an integrated hydrologic model. GSFLOW modeling software is used to simulate the nonlinear relationships between climate trends and precipitation partitioning into ET, runoff, and subsurface storage. Four global circulation models (GCMs), each with two greenhouse-gas scenarios, RCP45 and RCP85 are used to project future climate conditions. GCMs include the CanESM2, CNRM-CM5, HadGEM2-ES, and MIROC5 models. The model's simulated hydrologic conditions are compared with historical data to assess changes in water budgets and groundwater supply. Results indicate decreased groundwater storage in most scenarios due to increased natural evapotranspiration, vegetation consumptive use, and streamflow out of the watershed. Only scenarios with substantially increased future precipitation show increased groundwater storage. The study also highlights increased future aridity despite the rise in precipitation and large precipitation events forecast by GCMs, which increase the risk of urban floods and decrease stream leakage and water available to vegetation.

California↗

USGS2025

Subduction zone earthquake catalog separation tool: Implementation in the USGS 2025 Puerto Rico and U.S. Virgin Islands National Seismic Hazard Model

The U.S. Geological Survey (USGS) periodically releases updates to National Seismic Hazard Model (NSHM) for the United States and its territories leveraging current scientific knowledge and methodologies to guide public policy, building codes, and risk assessments regarding potential ground shaking due to earthquakes that may result in infrastructure damage. In subduction zones, there is a need to separate the earthquake catalog into tectonic regimes to create specific seismicity models for which the most appropriate ground‐motion models are then applied. Here, we describe newly developed methods and software, called CatSep, that classifies subduction zone events into three primary tectonic regimes: crustal, interface, and intraslab. This method incorporates information about the location of the earthquake relative to the subducting slab, the depth of the Mohorovičić discontinuity, and the earthquake’s moment tensor. Applying this method is a first step in the NSHM workflow for regions covering U.S. subduction zones. Results using this subduction zone earthquake catalog separation tool for the 2025 Puerto Rico and U.S. Virgin Islands NSHM earthquake catalog are presented and analyzed.

Puerto Rico, U.S. Virgin Islands↗

USGS2026

Nonstationary demographic state-space models using unreplicated counts for species undergoing environmental stressors

A fundamental task in ecological statistics is to estimate abundance and growth rate distributions from wildlife monitoring data to inform conservation management. Modeling time series of wildlife populations presents a number of challenges from both statistical and ecological perspectives, including discreteness; lack of replication; nonstationarity; and observation, demographic, and other phenomenological processes. Nonstationary dynamics are often exhibited by populations undergoing environmental stressors. Models must account for these characteristics to produce reliable estimates of abundance and trends, yet estimation can be challenging with unreplicated data. We propose nonstationary demographic state-space models using unreplicated counts for populations undergoing environmental stressors. A reduced growth rate model matches the complexity of the unreplicated count data, and a fecundity bound on growth rate distributions allows the separation of processes affecting growth rates like environmental stressors from those affecting abundance external to growth rates like migration. NDSSMs allow for the embedding of nonstationary model components, and we explore the use of changepoints, volatility clustering, and migration processes. We apply the proposed nonstationary models in case studies of herons affected by predator/competitor reestablishment and three bat species affected by a fungal pathogen causing white-nose syndrome. Nonstationary models outperform stationary models and generalized linear mixed effects models according to model scoring and visual inspection of predictions, and provide estimates more consistent with published values. Incorporating migration improves model fit universally, even with approximate one-way immigration, most likely because populations are extirpated, recolonized, and increase multiple-fold over the upper bound set by species fecundity. In addition, estimates of the timing and severity of the environmental stressor differed for models with migration. Including nonstationary and demographic components in a fecundity-bounded growth rate model improves inference and benefits interpretability of hyperparameters. In turn, this adjusts uncertainties in predictions of abundance and growth rates over time, providing the ingredients needed for informed conservation analysis and for directing future monitoring of at-risk species.

Journal of Agricultural, Biological and Environmen↗

USGS2025

Simulation of the impacts of spring diversions on streamflow in the Strawberry Creek watershed, San Bernardino County, California, using an integrated hydrological model

The Strawberry Creek watershed, situated in the San Bernardino Mountains of southern California, features a group of natural springs known as Arrowhead Springs that have been augmented with diversions in the form of sub-horizontal borings and tunnels. Understanding the impact of these structures on streamflow through groundwater capture is crucial for managing surface-water resources in this watershed. In this study we constructed the Strawberry Creek integrated hydrological model (SCIHM) to increase this understanding. The SCIHM is an integrated surface runoff and groundwater model that uses the coupled groundwater and surface-water flow model (GSFLOW), which is based on the integration of the precipitation-runoff modeling system (PRMS) and the modular groundwater flow model commonly called MODFLOW, version MODFLOW-2005 software to simulate surface runoff and infiltration and groundwater flow. The model has three layers, 263 rows, and 176 columns. The model area includes the Strawberry Creek and four adjacent watersheds. The PRMS model was calibrated using two streamflow gaging stations and the GSFLOW model was calibrated to reported spring diversion discharge and a sparse number of groundwater-level measurements. The SCIHM was run with and without diversions active and simulated streamflow was compared, finding that in the headwaters of Strawberry Creek about 35 percent of the diversion flow was captured from base flow.

EarthArXiv↗