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At least 1,747 records · Page 97Linked to original sources

Technical note: A low-cost approach to monitoring relative streamflow dynamics in small headwater streams using time lapse imagery and a deep learning model

Despite their ubiquity and importance as freshwater habitat, small headwater streams are under-monitored by existing stream gage networks. To address this gap, we describe a low-cost, non-contact, and low-effort method that enables organizations to monitor relative streamflow dynamics in small headwater streams. The method uses a camera to capture repeat images of the stream from a fixed position. A person then annotates pairs of images, in each case indicating which image has more apparent streamflow or indicating equal flow if no difference is discernible. A deep learning modeling framework called streamflow rank estimation (SRE) is then trained on the annotated image pairs and applied to rank all images from highest to lowest apparent streamflow. From this result a relative hydrograph can be derived. We found that our modeled relative hydrograph dynamics matched the observed hydrograph dynamics well for 11 cameras at 8 streamflow sites in western Massachusetts. Higher performance was observed during the annotation period (median Kendall's Tau rank correlation of 0.75, with a range of 0.6–0.83) than after it (median Kendall's Tau of 0.59, with range 0.34–0.74). We found that annotation performance was generally consistent across the 11 camera sites and 2 individual annotators and was positively correlated with streamflow variability at a site. A scaling simulation determined that model performance improvements were limited after 1000 annotation pairs. Our model's estimates of relative flow, while not equivalent to absolute flow, may still be useful for many applications, such as ecological modeling and calculating event-based hydrological statistics (e.g., the number of out-of-bank floods). We anticipate that this method will be a valuable tool to extend existing stream monitoring networks and provide new insights on dynamic headwater systems.

Massachusetts↗

Aridity reduces lag times between aquatic and terrestrial dry-down among watersheds and across years in the northwest US

Landscapes encompass both aquatic and terrestrial ecosystems that experience the same climate but may respond to climate in divergent ways. For example, the time lag between seasonal dry-down of terrestrial soil moisture and decline in streamflow has important implications for species and ecosystem processes across the aquatic–terrestrial interface. How these lags between aquatic and terrestrial hydrology vary with climate and spatial location within watersheds remains largely unexplored. Here, we examine seasonal patterns of aquatic–terrestrial dry-down across seven watersheds in the northwestern USA, spanning a wide range of aridity. We compared daily streamflow data from USGS gages at watershed outlets with simulated daily soil moisture (1979–2020) from multiple locations within each watershed. In all watersheds, annual dry cycles progressed sequentially through the following features: evapotranspiration, precipitation, shallow soil moisture, deep soil moisture, and finally streamflow. Seasonal streamflow minima lagged behind soil moisture minima for shorter durations in more arid watersheds and drier years. Within watersheds, lag times varied spatially due to interactions between elevation and aridity, with short lags in low-elevation soils near streams in arid watersheds and longer lags in less arid watersheds. Collectively, these results indicate shorter lags between seasonal aquatic and terrestrial dry periods in drier watersheds and years, and show that these tighter linkages are spatially aggregated in drier watersheds. The co-occurrence of seasonally dry conditions in both aquatic and terrestrial systems under increasing aridification is likely to intensify stressors on ecosystems and services. Recognizing these patterns may be critical for predicting ecosystem vulnerabilities and informing adaptation strategies to mitigate the impacts of seasonally dry conditions.

Montana, Oregon, Wyoming↗

Phylogenomics of endangered troglobiotic rove beetles (Coleoptera: Staphylinidae: Pselaphinae) from central Texas karst regions

The karst habitats of central Texas, USA, are home to an array of endemic subterranean-obligate (troglobiotic) invertebrates. This includes several species of rove beetles (Coleoptera: Staphylinidae: Pselaphinae). Here we developed a molecular dataset using sequence capture of Ultra-Conserved Elements (UCEs) from the Coleoptera-UCE-1.1 K v1 baits kit. These data were used to assess species relationships and patterns of diversification in this group, specifically among species within the genera Batrisodes Reitter 1882 and Texamaurops Barr and Steeves 1963 ; with a specific focus on the relationships of the federally listed as endangered B. texanus Chandler 1992 and B.cryptotexanus Chandler and Reddell 2001 . Our final datasets consisted of 69 individuals (two genera, Batrisodes [five species] and Texamaurops [one species], from 34 localities), and a molecular dataset of 658,560 aligned base pairs across 672 UCE loci. Concatenated and species-tree phylogenetic analyses resolved all troglobiotic taxa as a monophyletic group. Within the Travis and Williamson County troglobionts, we recovered four well-supported clades that generally follow hypothesized geologic barriers to dispersal formalized as karst fauna regions (KFRs). A northward pattern of diversification was observed among these groups: (A) Texamaurops reddelli Barr and Steeves 1963 (Jollyville Plateau KFR); (B) Batrisodes reyesi Chandler 1997 (West Cedar Park and Post Oak Ridge KFRs); (C) B. reyesi (McNeil-Round Rock KFR); (D) B. cryptotexanus + B. texanus (Georgetown and North Williamson KFRs). The morphologically defined Batrisodes texanus and B. cryptotexanus were not reciprocally monophyletic, nor clustered into two unique groups in clustering analyses of single nucleotide polymorphisms (SNPs). Rather, we found support for five major subclades and five to seven genetic clusters. These results suggest that diversification and subsequent isolation of clades may have occurred with the progressive availability of karst habitats over time in the North Williamson and Georgetown KFRs resulting from the interactions of faulting, geologic structure, and drainage basin evolution. Comparison with recent U.S. Fish and Wildlife Service cave habitat resiliency assessments indicated that four genetic clusters occur within at least partially resilient habitat, whereas three are confined to caves with low or impaired resiliency. Integrating genetic results presented here along with results of other molecular studies of co-occurring troglobiotic invertebrates supports considering additional geological substructure within the North Williamson KFR in conservation efforts for these rare and unique lineages and systems.

Texas↗

Population genetics of the endangered narrowly endemic Island Marble butterfly (Euchloe ausonides insulanus)

The Island Marble butterfly ( Euchloe ausonides insulanus ) is an endangered species endemic to the San Juan Islands off the coast of Washington State, United States, and British Columbia, Canada. The species was thought to be extinct for ~ 90 years before it was rediscovered at American Camp, San Juan Island National Historical Park in 1998. Here, we report the results of the first population genetic analyses for insulanus , using DNA collected non-invasively from individuals in the last known stronghold for the species. We used DNA extracted from meconium, larval exuviae, and natural mortalities to generate and test thirteen new microsatellite markers to estimate genetic diversity, population structure, and kinship. We assembled and annotated mitochondrial genomes, which were used alongside museum specimens of insulanus collected ~ 100 years ago from Vancouver Island, and other members of the E. ausonides species complex, to infer the evolutionary history of the species. The results indicated that insulanus experiences low heterozygosity, a small effective population size (N e ), and low allelic diversity. High levels of inbreeding were found in some individuals, but inbreeding was uneven across the population. No population structure or partitioning of genetic variation by host plant was detected. The mitogenomes of extant insulanus were all identical and modern samples showed a loss of allelic diversity compared to insulanus from museums. Extant insulanus formed a clade with museum specimens and we identified multiple putatively diagnostic alleles to differentiate insulanus from other subspecies. Based on these results, we outline considerations for species management and genetic monitoring.

British Columbia, Washington↗

Cryptic life history diversity supports endangered species recovery in an ultra-urbanized landscape

Urban landscapes are often overlooked in conservation planning, allowing human activities to take precedence in ecosystem management. However, even heavily modified environments can support diverse species profiles, but continued expansion of the human footprint could transform these biodiversity hotspots into ecological traps that serve as hidden catalysts for demographic declines. In the backdrop of one of the world’s most urbanized landscapes-New York City, USA—is a federally endangered population of shortnose sturgeon ( Acipenser brevirostrum ) that has been quietly recovering for several decades despite many demographic threats. Here, we identify a unique behavioral phenotype of shortnose sturgeon that occupies habitats in New York Harbor in late spring and fall, likely using the area to optimize bioenergetic processes. As this study highlights, urbanized environments can be a nexus for cryptic phenotypic diversity which, if overlooked, can disrupt eco-evolutionary processes and contribute to population and species loss.

New York↗

Systematics of three Amazonian antwren groups (Aves: Passeriformes: Thamnophilidae: Myrmotherula and Isleria)

Working within the framework of a companion phylogenetic analysis, we reexamined species limits within three lineages of antwrens (two species and one species complex) widely distributed across the Amazon Basin. Diagnostic differences in vocal and plumage characters provided the basis for the following taxonomic revisions. Myrmotherula longipennis is found to comprise three species: (1) M. longipennis ( sensu stricto ), which is confined to the region north of the Amazon; (2) M. garbei , which is elevated from subspecies status and includes the subspecies zimmeri ; and (3) M. paraensis , which is also elevated from subspecies status and includes subspecies transitiva and ochrogyna . Myrmotherula menetriesii also comprises three species: (1) M. menetriesii ( sensu stricto ), which occurs in the southwest quadrant of Amazonia and includes the subspecies berlepschi ; (2) M. cinereiventris , which is elevated from subspecies status and includes the subspecies pallida ; and (3) M. omissa , which is monotypic and is also elevated from subspecies status. We maintain two species in the Isleria complex, I. guttata and I. hauxwelli . Isleria guttata remains monotypic, but the subspecies of I. hauxwelli are revised. Isleria h. hellmayri is preserved as currently defined, but I. h. suffusa is synonymized with the nominate form, the geographic range of which is restricted to western Amazonia. A fourth subspecies, I. h. clarior , is resurrected; this subspecies occupies the major part of the range previously assigned to I. h. hauxwelli .

Zootaxa↗

Plate tectonics and volcanism in western California

Introduction Western California is home to a variety of volcanic rocks. The locations, ages, and chemical compositions of these volcanic rocks help tell part of the fascinating story of California’s plate tectonic evolution over the past 40 million years. These volcanic rocks are a product of multiple tectonic processes, including subduction of divergent and transform plate boundaries beneath continental North America, opening of a slab window, creation and migration of a tectonic triple junction, and the birth and growth of the San Andreas Fault. This fact sheet explains these tectonic processes and discusses their role in shaping the volcanic history of western California over the past 40 million years. By studying the volcanic rock record in western California, geologists are able to piece together how regional volcanism and plate tectonics are linked in space and time. Recognizing this linkage helps scientists to understand possible future volcanism in the region, potential hazards associated with this volcanism, and the impacts these hazards may have on population and infrastructure. The U.S. Geological Survey California Volcano Observatory (CalVO) closely monitors the parts of western California with the greatest potential for volcanism.

California↗

An inset groundwater-flow model to evaluate the effects of layering configuration on model calibration and assess managed aquifer recharge near Shellmound, Mississippi

The U.S. Geological Survey has developed a high-resolution inset groundwater-flow model in the Mississippi Delta as part of an interdisciplinary collaboration coordinated by the Mississippi Alluvial Plain project to provide a tool that stakeholders can use to support water-resource management decisions. Groundwater withdrawals from the Mississippi River Valley alluvial (MRVA) aquifer have been vital to support agricultural production in the region, but substantial groundwater-level declines near Shellmound, Mississippi, have caused concerns for long-term sustainability of the aquifer. To better understand the subsurface and try to mitigate the long-term groundwater-level declines, stakeholders have undertaken actions including a Groundwater Transfer and Injection Pilot (GTIP) project using a riverbank filtration-based managed aquifer recharge approach. The pilot project consisted of extracting groundwater near the Tallahatchie River and reinjecting it into the aquifer 3 kilometers west where water levels have substantially declined. A high-resolution airborne electromagnetic (AEM) survey was also completed to collect electrical resistivity data to support the GTIP project and the development of the groundwater model. The inset groundwater-flow model was developed to (1) integrate the AEM data into the optimal layering configuration of the MRVA aquifer that the available observation data can support through calibration, and (2) assess the potential effect of the GTIP project on the groundwater levels. The AEM data were processed into three different layering configurations leading to the development of model A (18 layers), model B (16 layers), and model C (8 layers), all at a 100- x 100-meter cell spatial resolution using the U.S. Geological Survey modular finite-difference flow model 6 code with Newton-Raphson formulation. The model development process integrated recent advances in modeling, such as the incorporation of AEM data, the use of outputs from the soil-water-balance (SWB) model, and the Aquaculture and Irrigation Water-Use Model, and was facilitated by robust automation using the open-source python packages Modflow-setup and SFRmaker. Using Parameter Estimation ++ Iterative Ensemble Smoother, the three numerical groundwater-flow models (models A, B, and C) were calibrated against a set of observations, which included aquifer groundwater levels, streamflows, stream stage, and aquifer transmissivity. Results indicate that the detailed representation of MRVA aquifer layers in model A produced the best calibrated model by history matching, and the integration of data representing surficial connectivity played a key role in improving groundwater recharge and enhancing the ability of the model to match groundwater levels in the cone of depression. A forecast model simulated the managed aquifer recharge approach, and the results indicated that, given average irrigation and recharge conditions (2010–15), the GTIP project has the potential to induce groundwater-level increases of as much as 3 meters around the injection site, but a sustained increase would require repetition in subsequent years of water transfer at 2022 rates or above.

Mississippi↗

Statistical streamflow comparison of current and historical 30-year periods for selected streams in New Jersey

As the population of New Jersey increases, supplying adequate drinking water to meet demand remains a high priority. To better understand potential streamflow trends over time, the U.S. Geological Survey completed a study comparing low flows at continuous- and partial-record streamgages in New Jersey between a historical period (1950–79) and a current period (1990–2019). Fourteen statistics (one median for each of the twelve monthly minimum 1-day flows, minimum 7-day average streamflow with a 10-year recurrence interval, and median of the daily mean flows for the month of September) were calculated to evaluate how streamflow conditions may differ between the two time periods. Percent change was also calculated to better understand the magnitude of difference between the periods at individual streamgages. A Paired Wilcoxon Signed-Rank Test was implemented to test for a change in distribution between the two time periods for each statistic of interest. Results indicated that the median of the minimum 1-day flows for the months of January, February, June, September, and December and the median of the daily mean flows for the month of September had a statistically significant difference in distribution between the time periods for continuous-record streamgages. None of the statistics had a statistically significant difference in distribution for the partial-record streamgages. The largest percent changes between time periods occurred in the northern part of the state, above the Fall Line. Precipitation, land cover, and water use changes were assessed to contribute to the understanding of these differences between time periods. The median of the minimum 1-day flows for the months of January and December generally increased across the state, whereas the median of the minimum 1-day flows for the months of May and September generally decreased throughout the state.

New Jersey↗

East Greenland Ice Sheet retreat history from Scoresby Sund and Storstrømmen Glacier during the last deglaciation

The lack of geological constraints on past ice-sheet change in marine-based sectors of the Greenland Ice Sheet (GrIS) following the Last Glacial Maximum limits our ability to assess (1) the drivers of ice-sheet change, and (2) the performance of ice-sheet models that are benchmarked against the paleo-record of GrIS change. Here, we provide new in situ 10 Be surface exposure chronologies of ice-sheet margin retreat from the outer Scoresby Sund and Storstrømmen Glacier regions in eastern and northeastern Greenland, respectively. Ice retreated from Rathbone Island, east of Scoresby Sund, by ∼ 14.1 ka, recording some of the earliest documentations of terrestrial deglaciation in Greenland. The mouth of Scoresby Sund deglaciated by ∼ 13.2 ka, and retreated at an average rate of ∼ 43 m yr −1 between 13.2 and 9.7 ka. Storstrømmen Glacier retreated from the outer coast to within ∼ 3 km of the modern ice margin between ∼ 12.7 and 8.6 ka at an average rate of ∼ 28 m yr −1 . Retreat then slowed or reached a stillstand as ice retreated ∼ 3 km between ∼ 8.6 ka to the modern ice margin at ∼ 8.0 ka. These retreat rates are consistent with late glacial and Holocene estimates for marine-terminating outlet glaciers across East Greenland, and comparable to modern retreat rates observed at the largest ice streams in northeastern, and northwestern Greenland.

Scoresby Sund, Storstrømmen Glacier↗

Estimating the probability of export restrictions to inform mineral criticality

To assess risks associated with advanced technologies’ supply chain disruptions, governmental agencies and others have developed mineral “criticality” assessments, with criticality described using the economic impact and probability of supply chain disruptions. Previous work developed subjective supply risk indicators to approximate this probability, typically combining several factors such as supply diversity and trading partners’ political stability, where indicator weightings can substantially impact results. This work explicitly quantifies export barrier probability using an ensemble of machine learning classifiers, with probability estimates informed by exogenous variables, including prior barrier implementation and global export dominance. Major differences in high-probability countries and commodities are observed across models, but the ensemble method highlights Indonesia, China, Tanzania, and the United States as particularly high risk. The Supplementary Data File provides export barrier probability estimates for each analyzed country-commodity pair, enabling a direct, quantitative, objective contribution to assessing mineral criticality, enhancing risk identification and prioritization for policymakers.

Resources, Conservation, and Recycling↗

Carbon and nitrogen isotopes of different native fish tissues from the Santa Ana River, California

Objective Stable isotopes are commonly used to understand the role of fishes in aquatic food webs. However, variability in species- and tissue-specific isotopic values can affect the inference that is drawn from a stable isotope study. We evaluated differences in stable isotopes of carbon (δ 13 C) and nitrogen (δ 15 N) among three tissue types (white muscle, caudal fin rays, and eye lenses) for Santa Ana Sucker Pantosteus santaanae and Arroyo Chub Gila orcuttii to inform the design of a stable isotope study in the Santa Ana River, an urban river that is located in southern California. Methods We used multivariate analyses to test for differences in the stable isotopes of carbon (δ 13 C) and nitrogen (δ 15 N) among the three tissue types that were collected from Santa Ana Sucker and Arroyo Chub. We also summarized the variability in isotopic values that was recorded over time in fish eye lenses and interpreted this variability in reference to the spatial patterns in isotopic values that have been previously reported throughout the Santa Ana River. Results We found that fin ray tissue and white muscle tissue were not significantly different for either isotope or fish species. Fish eye lenses were significantly higher in δ 13 C than muscle tissue, and eye lenses were significantly higher in δ 15 N than fin ray tissue for both fishes. We also found a greater range in δ 13 C and δ 15 N across eye lens layers for Santa Ana Sucker (δ 13 C = 2.01 ± 0.96‰, δ 15 N = 4.93 ± 4.18‰) than for Arroyo Chub (δ 13 C = 0.96 ± 0.65‰, δ 15 N = 4.63 ± 1.45‰). Conclusion Our results indicate that fin rays may be a viable nonlethal alternative to white muscle tissue for use in a stable isotope study of native fish of the Santa Ana River. Additionally, eye lenses could provide a chemical history of fishes within the river, but species-specific correction factors may be needed if stable isotope values for eye lenses are to be compared with more conventional tissue types (e.g., white muscle).

California↗

Population demographics of invasive Silver Carp in a Great Plains river network

Objective Knowledge of invasive Silver Carp Hypophthalmichthys molitrix population demographics and distributions may inform estimates of efforts necessary to achieve reductions in abundance and identify locations to conduct removal. Although extensively studied in other parts of their invasive range (e.g., Mississippi and Illinois rivers), less is known regarding Silver Carp population demographics in Great Plains rivers and streams. As such, this study characterized Silver Carp population demographics along an invasion gradient in a Great Plains river network containing multiple hydrologically unique river reaches and tributaries. Methods Boat and tote-barge electrofishing surveys were conducted within the lower Platte River basin in the spring, summer, and fall of 2022 and 2023. Lapilli otoliths were collected for assessment of age, growth, and annual mortality. Information on sex also was collected. A spatial assessment of differences in population demographics was performed between core and periphery regions of the population. Results There were 1,528 Silver Carp collected. A spatial difference in relative abundance was observed and was associated with changes in body condition and total length along the longitudinal gradient of the lower Platte River basin. Silver Carp sex ratios were male-skewed across the lower Platte River basin (1.6:1), particularly in reaches near the invasion front (10.1:1). Conclusions Silver Carp population demographics within the lower Platte River basin were aligned with an establishing population characterized by rapid individual growth and skewed sex ratios. Broadscale variation in population characteristics, including growth and size structure, suggested density-dependent processes. Silver Carp occurred throughout the study area, indicating that braided Great Plains streams are susceptible to invasion. This study provided insight into Silver Carp population demographics in the lower Platte River basin and may provide useful information for the development of Silver Carp management plans in similar Great Plains streams.

North American Journal of Fisheries Management↗

Evaluating sediment transport and metal sorption in the San Juan River watershed

The physical and chemical characteristics of sediment influence the transport of metals in rivers. The San Juan River and its tributaries are located in the Four Corners Region in the southwestern United States and the watershed contains a wide variety of potential metal sources. Comparisons of past and present sediment data provide insight into the effects of seasonality and storm events on the transport of sediment within a watershed. Comparisons suggest finer (<0.63 µm) sediment particles increase at a greater rate during intense storm events than coarser sediment particles. These fine, clay-sized sediments have a greater potential for metal sorption. Statistical analyses compared upper and lower portions of the San Juan River. Results show that total elemental concentration decreases in sediments (1785.15 μ g l −1 ) and that concentrations increase in the aqueous phase (2063.08 μ g l −1 ) downstream in the San Juan River. Analyses using geochemical and scanning electron microscopy with energy dispersive spectroscopy suggest that sediment clay particles are the most likely constituent to transport metals in the San Juan River. Metal transport is further aided by metal oxide coatings that develop on the surfaces of larger particles. Increases in aggregation of fine-grained particles in the downstream portions of the San Juan River are also likely to bind elements within sediments, which can act as both a source and sink for metals in the lower watershed. CEC , geochemistry , PSD

Arizona, Colorado, New Mexico, Utah↗

Preserving and increasing water resources—Natural infrastructure in dryland streams in Baja California Sur, Mexico

The Los Planes watershed of Baja California Sur, Mexico, and its underlying aquifer are experiencing groundwater decline owing to low average annual rainfall (28.1 centimeters per year) and rising water demand from population growth and agricultural activities. This decline in water availability can lead to desertification—a process that changes arable land to desert by degrading soil and vegetation—and can pose serious challenges to livelihoods that depend on the land. To address these issues, a ranch in the Los Planes watershed has installed many natural infrastructures in dryland streams (NIDS) in channels for soil and water conservation. In 2022, the U.S. Geological Survey (USGS) began working with regional researchers and land managers to investigate the effects of NIDS on natural biological, geochemical, and physical processes and determine the efficacy of NIDS for water augmentation in the Los Planes watershed. The USGS also worked with local academic institutions and nonprofit organizations to create public educational opportunities focused on the area’s hydrogeology. These and other collaborative efforts with the U.S. Water Partnership and Innovaciones Alumbra aim at enhancing water resources in the Baja California Sur region and promoting water security and safeguarding community well-being. Resume La cuenca de Los Planes, ubicada en Baja California Sur, México, y su acuífero subyacente, están sufriendo una disminución de las aguas subterráneas debido a la baja precipitación media anual (28.1 centímetros por año) y la alta demanda de agua por parte de una población creciente y la actividad agrícola. Esta disminución de la disponibilidad de agua puede conducir a la desertificación—un proceso que por medio de la degradación del suelo y la vegetación convierte a la tierra cultivable en desierto—representando un serio desafío para los medios de vida de las personas. Para abordar estos problemas, un rancho en la cuenca de Los Planes ha instalado numerosas obras de Infraestructura Natural en Arroyos de Tierras Áridas (INATS) para conservación del suelo y del agua. En 2022, el Servicio Geológico de los Estados Unidos (USGS, por sus siglas en inglés) comenzó a trabajar con investigadores regionales y gestores de tierras para estudiar los efectos de INATS en los procesos biológicos, geoquímicos y físicos, y determinar su eficacia en el aumento de los recursos hídricos en la cuenca de Los Planes. El USGS se ha asociado con instituciones académicas y organizaciones locales sin fines de lucro para crear oportunidades educativas públicas centradas en la hidrogeología de la zona. Estos y otros esfuerzos colaborativos con la Asociación del Agua de Estados Unidos (U.S. Water Partnership) e Innovaciones Alumbra, tienen como objetivo mejorar el uso de los recursos hídricos en la región de Baja California Sur, promover la seguridad hídrica y proteger el bienestar de la comunidad.

Baja California Sur↗

Modeling floods, sediment entrainment, and downstream debris flows from hypothetical breaches of the blockage at Spirit Lake, Washington

This report describes a modeling investigation by the U.S. Geological Survey (USGS) of hazards in the Toutle and Cowlitz River valleys posed by hypothetical outburst floods from Spirit Lake, Washington. A massive debris avalanche resulting from the collapse of Mount St. Helens’ north flank during the May 18, 1980, eruption blocked Spirit Lake’s natural outlet into the North Fork Toutle River. Lacking a natural outlet, subsequent runoff in the Spirit Lake watershed contributed to a rising lake level, elevating the potential for debris-dam breaching or catastrophic failure. The influence of highly erodible bed sediment in the upper North Fork Toutle River on downstream flood and debris-flow dynamics and extent is assessed in this study. Simulations of clear-water (non-erosive) outburst floods were used as a baseline and compared to erosive flows that entrain large volumes of material and transition into debris flows along their flow path, revealing the influence of entrainment on hazard extent. Clear-water floods were modeled with the shallow water equations. Erosive flows were modeled with a two-phase granular fluid model that accommodates mobilization and incorporation of sediment from the bed into the overlying flow and resultant changes in flow rheology across a wide range of solid concentrations, from dilute suspensions to dense-granular debris flows. Entrainment of bed material was found to substantially increase the total flow volume (total volume of transported water and sediment is approximately 150 percent of the water volume for non-erosive flows). Erosive flows are shown to exhibit higher flow-front speeds and faster downstream arrival times than non-erosive flows, consistent with volume amplification effects near the actively mobilizing flow front. However, the larger total volume of transported material does not necessarily lead to an enhancement of total volume throughput (cumulative discharge) or inundation extent (total affected area) for all locations along the entire flow path; while entrainment leads to the displacement of a larger volume of material overall, much of this dislocated material (water and sediment) deposits upstream from the distal extent of the flows. These results are consistent with energetic considerations of initial potential energy and granular shear resistance.

Washington↗

Absolute radiometric calibration evaluation of Uncrewed Aerial System (UAS) Headwall and MicaSense sensors and improving data quality using the Empirical Line Method

The use of Uncrewed Aerial Systems (UASs) for remote sensing applications has increased significantly in recent years due to their low cost, operational flexibility, and rapid advancements in sensor technologies. In many cases, UAS platforms are considered viable alternatives to conventional satellite and crewed airborne platforms, offering very high spatial, spectral, and temporal resolution data. However, the radiometric quality of UAS-acquired data has not received equivalent attention, particularly with respect to absolute calibration. In this study, we (1) evaluate the absolute radiometric performance of two commonly used UAS sensors: the Headwall Nano-Hyperspec hyperspectral sensor and the MicaSense RedEdge-MX Dual Camera multispectral system; (2) assess the effectiveness of the Empirical Line Method (ELM) in improving the radiometric accuracy of reflectance products generated by these sensors; and (3) investigate the influence of calibration target characteristics—including size, material type, reflectance intensity, and quantity—on the performance of ELM for UAS data. A field campaign was conducted jointly by the U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center and the USGS National Uncrewed Systems Office (NUSO) from 15 to 18 July 2023, at the USGS EROS Ground Validation Radiometer (GVR) site in Sioux Falls, South Dakota, USA, over a 160 m × 160 m vegetated area. Absolute calibration accuracy was evaluated by comparing UAS sensor-derived reflectance to in situ measurements of the site. Results indicate that the Headwall Nano-Hyperspec and MicaSense sensors underestimated reflectance by approximately 0.05 and 0.015 reflectance units, respectively. While the MicaSense sensor demonstrated better inherent radiometric accuracy, it exhibited saturation over bright targets due to limitations in its automatic gain and exposure settings. Application of the ELM using just two calibration targets reduced discrepancies to within 0.005 reflectance units. Reflectance products generated using various target materials—such as felt, melamine, or commercially available validation targets—showed comparable agreement with in situ measurements when used with the Nano-Hyperspec sensor. Furthermore, increasing the number of calibration targets beyond two did not yield measurable improvements in calibration accuracy. At a flight altitude of 200 ft above ground level (AGL), a target size of 0.6 m × 0.6 m or larger was sufficient to provide pure pixels for ELM implementation, whereas smaller targets (e.g., 0.3 m × 0.3 m) posed challenges in isolating pure pixels. Overall, the standard manufacturer-recommended calibration procedures were insufficient for achieving high radiometric accuracy with the tested sensors, which may restrict their applicability in scenarios requiring greater accuracy and precision. The use of the ELM significantly improved data quality, enhancing the reliability and applicability of UAS-based remote sensing in contexts requiring high precision and accuracy.

Remote Sensing↗

Quantitative PCR detection of endangered diamond darter Crystallaria Cincotta in environmental DNA: Employing locked nucleic acids and blocking probe for specificity

This study presents a quantitative PCR (qPCR) assay for the detection of the endangered diamond darter Crystallaria cincotta from environmental DNA (eDNA) in water samples. The assay design is based on an alignment of mitochondrial cytochrome b DNA sequences from 58 individuals representing 25 percid species. Leveraging genetic differences, a species-specific qPCR assay was designed, incorporating alocked nucleic acid (LNA)-enriched probe and a secondary blocking probe to enhance specificity. The assay targets a 93-base pair fragment that includes a diagnostic single nucleotide polymorphism in the probe region; combined with multiple primer mismatches, this provides specificity for distinguishing C. cincotta from other sympatric percid species. Specificity was validated by testing genomic DNA from 16 percid species and synthetic templates, confirming no cross-reactivity. Performance metrics, including the standard curve, qPCR efficiency, limit of detection, and limit of quantification, are reported. The qPCR assay exhibited sufficient sensitivity to detect C. cincotta eDNA in environmental water samples collected from occupied riverine habitats. This study illustrates the effectiveness of LNA-enriched and blocking probes in developing species-specific qPCR assays for eDNA applications, demonstrating their utility in accurately distinguishing closely related species within diverse fish communities.

Conservation Genetics Resources↗