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Perils of correlating CUSUM-transformed variables to infer ecological relationships (Breton et al. 2006; Glibert 2010)

We comment on a nonstandard statistical treatment of time-series data first published by Breton et al. (2006) in Limnology and Oceanography and, more recently, used by Glibert (2010) in Reviews in Fisheries Science. In both papers, the authors make strong inferences about the underlying causes of population variability based on correlations between cumulative sum (CUSUM) transformations of organism abundances and environmental variables. Breton et al. (2006) reported correlations between CUSUM-transformed values of diatom biomass in Belgian coastal waters and the North Atlantic Oscillation, and between meteorological and hydrological variables. Each correlation of CUSUM-transformed variables was judged to be statistically significant. On the basis of these correlations, Breton et al. (2006) developed "the first evidence of synergy between climate and human-induced river-based nitrate inputs with respect to their effects on the magnitude of spring Phaeocystis colony blooms and their dominance over diatoms."

Limnology and Oceanography↗

Undergraduate research projects help promote diversity in the geosciences

A workforce that draws from all segments of society and mirrors the ethnic, racial, and gender diversity of the United States population is important. The geosciences (geology, hydrology, geospatial sciences, environmental sciences) continue to lag far behind other science, technology, engineering and mathematical (STEM) disciplines in recruiting and retaining minorities (Valsco and Valsco, 2010). A report published by the National Science Foundation in 2015, “Women, Minorities, and Persons with Disabilities in Science and Engineering” states that from 2002 to 2012, less than 2% of the geoscience degrees were awarded to African-American students. Data also show that as of 2012, approximately 30% of African-American Ph.D. graduates obtained a bachelor’s degree from a Historic Black College or University (HBCU), indicating that HBCUs are a great source of diverse students for the geosciences. This paper reviews how an informal partnership between Tennessee State University (a HBCU), the U.S. Geological Survey, and Mammoth Cave National Park engaged students in scientific research and increased the number of students pursuing employment or graduate degrees in the geosciences.

Conference Paper↗

Deep-sea coral research and technology program: Alaska deep-sea coral and sponge initiative final report

Deep-sea coral and sponge ecosystems are widespread throughout most of Alaska’s marine waters. In some places, such as the central and western Aleutian Islands, deep-sea coral and sponge resources can be extremely diverse and may rank among the most abundant deep-sea coral and sponge communities in the world. Many different species of fishes and invertebrates are associated with deep-sea coral and sponge communities in Alaska. Because of their biology, these benthic invertebrates are potentially impacted by climate change and ocean acidification. Deepsea coral and sponge ecosystems are also vulnerable to the effects of commercial fishing activities. Because of the size and scope of Alaska’s continental shelf and slope, the vast majority of the area has not been visually surveyed for deep-sea corals and sponges. NOAA’s Deep Sea Coral Research and Technology Program (DSCRTP) sponsored a field research program in the Alaska region between 2012–2015, referred to hereafter as the Alaska Initiative. The priorities for Alaska were derived from ongoing data needs and objectives identified by the DSCRTP, the North Pacific Fishery Management Council (NPFMC), and Essential Fish Habitat-Environmental Impact Statement (EFH-EIS) process. This report presents the results of 15 projects conducted using DSCRTP funds from 2012-2015. Three of the projects conducted as part of the Alaska deep-sea coral and sponge initiative included dedicated at-sea cruises and fieldwork spread across multiple years. These projects were the eastern Gulf of Alaska Primnoa pacifica study, the Aleutian Islands mapping study, and the Gulf of Alaska fish productivity study. In all, there were nine separate research cruises carried out with a total of 109 at-sea days conducting research. The remaining projects either used data and samples collected by the three major fieldwork projects or were piggy-backed onto existing research programs at the Alaska Fisheries Science Center (AFSC).

NOAA Technical Memorandum↗

Rates of chemical weathering of rocks and minerals

Researchers in geomorphology, geochemistry, quaternary geology, soil science, and mineralogy will welcome this volume, the first to focus exclusively on rates of silicate chemical weathering. Consisting largely of previously unpublished data from six countries, the volume examines the latest experimental, modelling, and field results. New information is presented on topics of current research interest, including inferences about chemical mechanisms at the level of mineral surfaces, and data relating weathering rates to landscape evolution over millions of years. The volume integrates the variety of approaches used by diverse subdisciplines in the assessment of weathering rates, and provides up-to-date references.

Book↗

Novel quantitative methods to enable multispectral identification of high-purity water ice exposures on Mars using High Resolution Imaging Science Experiment (HiRISE) images

Reliable detection and characterization of water ice on the Martian surface is pivotal to not only understand its present and past climate, but to also provide valuable information on in-situ resource availability and distribution for future human exploration missions. Ice-rich features are currently identified with visible/near-IR (VNIR), thermal IR and radar data. However, their coarse spatial scale sometimes limits confident characterization of small (i.e., meter-scale) icy exposures resulting from recent activity like new impacts. Water ice bearing materials possess weaker spectral characteristics at wavelengths shorter than ∼1030 nm that may be resolved by VNIR imaging instruments like the High Resolution Imaging Science Experiment (HiRISE) and the Colour and Stereo Surface Imaging System (CaSSIS). Our study assesses the spectral capability of HiRISE colour observations to help distinguish high purity water ice exposures from ice-poor materials. We report detailed methodologies for reliable colour characterization of icy surface using unfiltered HiRISE images. We present the first quantitative approach to uniquely characterize high-purity ice-rich materials through spectral shape and spectral parameterization methods at high spatial resolution (∼50 cm/pixel). We also present three spectral parameters to aid detection of pure water ice features, while also providing statistical constraints to enable a quantitative interpretation scheme. Our methods are observed to work well in characterizing and separating ice-rich features uniquely from ice-poor and ferrous materials. However, we do observe that these methods have a lower grain size detection limit of ∼250–300 μm, and may not be able to uniquely separate frosts from ground ice exposures. We also apply these methods to better constrain the composition of bright materials exposed by recent impacts identified in previous surveys, where substantial evidence for ice-bearing materials was previously unavailable. Overall, our work proposes HiRISE colour-based methods as a novel approach for high-resolution multispectral characterization of ice-rich features on the Martian surface, which is of particular value since the Compact Reconnaissance Imaging Spectrometer for Mars (CRISM) has ceased operations.

Icarus↗

Workshops report for mesophotic and deep benthic community fish, mobile invertebrates, sessile invertebrates and infauna

Two workshops with subject matter experts in the appropriate fields, were held in November and December 2021 to elicit guidance and feedback from the broader mesophotic and deep benthic scientific community. These workshops focused on best practices/approaches and identifying data gaps relative to habitat assessment and evaluation goals of the Mesophotic and Deep Benthic Community (MDBC) restoration portfolio. The first workshop was a combined effort of the Habitat Assessment and Evaluation (HAE) Project Team and the Deepwater Horizon (DWH) Program. Industrial Economics, Inc. (IEc) provided extensive workshop planning, organizing, execution, and facilitation support during all stages of the workshop. Based on a questionnaire sent to scientists in August, 2021, the workshop focused on fish and mobile invertebrate habitat associations, abundance trends, community metrics, and food web functionality. Topical presentations and discussions focused not only on demersal fish and mobile invertebrates that are directly associated with mesophotic and deep benthic habitats, but also considered water column species and communities that benefit from these habitats more broadly. The second workshop, intended to complement the first workshop, focused on identifying best practices and critical information gaps for key community metrics, larval dispersal modeling, connectivity, effects and variability of environmental parameters, and recovery trajectories of corals, infauna, and other sessile invertebrates. Through literature review, internal HAE scientists considered these topics to be critical for restoration success. Products from the literature review included topical summaries (see Appendix B) that summarized the current state-of-the-science and provided the framework for the workshop. Information generated from the workshops will assist the MDBC HAE Project, and more broadly the DWH Program, identify data gaps and develop a suite of best practices for restoration activities.

DWH MDBC Summary Report↗

The art and science of weed mapping

Land managers need cost-effective and informative tools for non-native plant species management. Many local, state, and federal agencies adopted mapping systems designed to collect comparable data for the early detection and monitoring of non-native species. We compared mapping information to statistically rigorous, plot-based methods to better understand the benefits and compatibility of the two techniques. Mapping non-native species locations provided a species list, associated species distributions, and infested area for subjectively selected survey sites. The value of this information may be compromised by crude estimates of cover and incomplete or biased estimations of species distributions. Incorporating plot-based assessments guided by a stratified-random sample design provided a less biased description of non-native species distributions and increased the comparability of data over time and across regions for the inventory, monitoring, and management of non-native and native plant species.

Environmental Monitoring and Assessment↗

The U.S. Geological Survey Geologic Collections Management System (GCMS)—A master catalog and collections management plan for U.S. Geological Survey geologic samples and sample collections

**Updated guidance is available in USGS Instructional Memorandum CSS 2019-01 .** Abstract The U.S. Geological Survey (USGS) is widely recognized in the earth science community as possessing extensive collections of earth materials collected by research personnel over the course of its history. In 2006, a Geologic Collections Inventory was conducted within the USGS Geology Discipline to determine the extent and nature of its sample collections, and in 2008, a working group was convened by the USGS National Geologic and Geophysical Data Preservation Program to examine ways in which these collections could be coordinated, cataloged, and made available to researchers both inside and outside the USGS. The charge to this working group was to evaluate the proposition of creating a Geologic Collections Management System (GCMS), a centralized database that would (1) identify all existing USGS geologic collections, regardless of size, (2) create a virtual link among the collections, and (3) provide a way for scientists and other researchers to obtain access to the samples and data in which they are interested. Additionally, the group was instructed to develop criteria for evaluating current collections and to establish an operating plan and set of standard practices for handling, identifying, and managing future sample collections. Policies and procedures promoted by the GCMS would be based on extant best practices established by the National Science Foundation and the Smithsonian Institution. The resulting report—USGS Circular 1410, “The U.S. Geological Survey Geologic Collections Management System (GCMS): A Master Catalog and Collections Management Plan for U.S. Geological Survey Geologic Samples and Sample Collections”—has been developed for sample repositories to be a guide to establishing common practices in the collection, retention, and disposal of geologic research materials throughout the USGS. While constructing this report, the GCMS’s potential customers and their needs were considered. Two critical definitions have been clarified: a repository is a facility for the long-term management of geologic collections, and a collection is a set of specimens that have been brought together on the basis of some common characteristic. Required sample metadata for newly collected samples, as well as for older collections, were also stipulated and are listed and explained in this report. Several basic policies are also recommended by the GCMS in order to standardize operations among the physical repositories where collections are currently housed. The GCMS Collection Management Plan provides a set of protocols and templates for the management of scientific collections, including access, storage, transfer, and disposal of physical geologic samples and data. This plan is flexible to allow each repository to adapt the practices best suited to its collections. The general consideration for implementation of the GCMS is that all active USGS geologic sample repositories will form the core of GCMS and that participating science centers will develop procedures based on proposed GCMS methodologies. The GCMS is a collective resource for the entire USGS community and the users who discover the geologic materials kept in these repositories and seek to access them.

Circular↗

Orbital radar studies of paleodrainages in the central Namib Desert

Orbital radar images of the central Namib Desert show clearly the extent of relict fluvial deposits associated with former courses of the Tsondab and Kuiseb rivers. South of the Kuiseb River, radar data show the existence of a drainage network developed in calcrete-cemented late Tertiary fluvial deposits. The sand-filled paleovalleys are imaged as radar-dark tones in contrast to the radar-bright interfluves where the calcreted gravels occur. The drainage network developed as a result of local runoff from indurated gravels and channeled surface and subsurface flow to the sites of the many interdune lacustrine deposits found in the area. (C) Elsevier Science Inc., 2000.Orbital radar images of the central Namib Desert show clearly the extent of relict fluvial deposits associated with former courses of the Tsondab and Kuiseb rivers. South of the Kuiseb River, radar data show the existence of a drainage network developed in calcrete-cemented late Tertiary fluvial deposits. The sand-filled paleovalleys are imaged as radar-dark tones in contrast to the radar-bright interfluves where the calcreted gravels occur. The drainage network developed as a result of local runoff from indurated gravels and channeled surface and subsurface flow to the sites of the many interdune lacustrine deposits found in the area.

Remote Sensing of Environment↗

The Ames MER microscopic imager toolkit

12The Mars Exploration Rovers, Spirit and Opportunity, have spent several successful months on Mars, returning gigabytes of images and spectral data to scientists on Earth. One of the instruments on the MER rovers, the Athena Microscopic Imager (MI), is a fixed focus, megapixel camera providing a ??3mm depth of field and a 31??31mm field of view at a working distance of 63 mm from the lens to the object being imaged. In order to maximize the science return from this instrument, we developed the Ames MI Toolkit and supported its use during the primary mission. The MI Toolkit is a set of programs that operate on collections of MI images, with the goal of making the data more understandable to the scientists on the ground. Because of the limited depth of field of the camera, and the often highly variable topography of the terrain being imaged, MI images of a given rock are often taken as a stack, with the Instrument Deployment Device (IDD) moving along a computed normal vector, pausing every few millimeters for the MI to acquire an image. The MI Toolkit provides image registration and focal section merging, which combine these images to form a single, maximally in-focus image, while compensating for changes in lighting as well as parallax due to the motion of the camera. The MI Toolkit also provides a 3-D reconstruction of the surface being imaged using stereo and can embed 2-D MI images as texture maps into 3-D meshes produced by other imagers on board the rover to provide context. The 2-D images and 3-D meshes output from the Toolkit are easily viewed by scientists using other mission tools, such as Viz or the MI Browser.This paper describes the MI Toolkit in detail, as well as our experience using it with scientists at JPL during the primary MER mission. ?? 2005 IEEE.

Conference Paper↗

A selected bibliography of remote sensing applications to soil science

The bibliography contains approximately 200 references dealing with the application of remote sensing technology to the identification and analysis of soils. The scientific papers and reports listed describe procedures and methods used in data collection and include specific applications of those data to soil studies. Most citations discuss current work from 1970 to 1978 and all references are categorized according to the type of remotely sensed data used and their application.

Report↗

Earth science studies in support of public policy development and land stewardship — Headwaters Province, Idaho and Montana

The USGS Headwaters Province project in western Montana and northern and central Idaho was designed to provide geoscience data and interpretations to Federal Land Management Agencies and to respond to specific concerns of USDA Forest Service Regions 1 and 4. The project has emphasized development of digital geoscience data, GIS analyses, topical studies, and new geologic interpretations. Studies were designed to more completely map lithologic units and determine controls of deformation, magmatism, and mineralizing processes. Topical studies of geologic basement control on these processes include study of regional metallogenic patterns and their relation to the composition and architecture of underlying, unexposed basement; timing of igneous and hydrothermal systems, to identify regionally important metallogenic magmatism; and the geologic setting of Proterozoic strata, to better understand how their sedimentary basins developed and to define the origin of sediment-hosted mineral deposits. Interrelated products of the project are at complementary scales.

Idaho, Montana↗

Regional climate change-Science in the Southeast

Resource managers are at the forefront of a new era of management. They must consider the potential impacts of climate change on the Nation's resources and proactively develop strategies for dealing with those impacts on plants, animals, and ecosystems. This requires rigorous, scientific understanding of environmental change. The role of the U.S. Geological Survey (USGS) in this effort is to analyze climate-change data and develop tools for assessing how changing conditions are likely to impact resources. This information will assist Federal, State, local, and tribal partners manage resources strategically. The 2008 Omnibus Budget Act and Secretarial Order 3289 established a new network of eight Department of Interior Regional Climate Science Centers to provide technical support for resource managers. The Southeast Regional Assessment Project (SERAP) is the first regional assessment to be funded by the USGS National Climate Change and Wildlife Science Center (http://nccw.usgs.gov/). The USGS is working closely with the developing Department of Interior Landscape Conservation Cooperatives to ensure that the project will meet the needs of resource managers in the Southeast. In addition, the U.S. Fish and Wildlife Service is providing resources to the SERAP to expand the scope of the project.

Fact Sheet↗

Stressor identification framework of biological impairment in Mississippi streams to support watershed restoration and TMDL development

The Clean Water Act (CWA) requires States to identify waters that are impaired for designated uses. These waters are published through a State’s §303(d) list. The CWA also requires that a total maximum daily load (TMDL) be completed for each water body to calculate the maximum amount of contaminants that can be present in that water body and still meet water-quality standards. The Mississippi Department of Environmental Quality (MDEQ) uses a statewide monitoring and assessment strategy to collect benthic macroinvertebrate community data to assess the health of streams and rivers and to identify impaired waters. Waters that are found to be impaired based on the macroinvertebrate community data are listed on the Mississippi §303(d) list, and the cause of impairment is listed as “biological impairment.” Although the CWA requires TMDLs to be developed for applicable contaminants identified in the §303(d) list, TMDLs cannot be computed for stream reaches in Mississippi listed for biological impairment because the actual stressors causing the impairment have not yet been determined. The MDEQ and other water-resource managers in Mississippi require a framework for stressor identification in biologically impaired streams and rivers. This report is organized to (1) provide a general overview of biological impairment and stressor identification in stream ecosystems and (2) provide a detailed framework for stressor identification of Mississippi streams that are biologically impaired. The intent is for the framework to reduce subjectivity, provide consistency, and allow for adaptation as the science evolves. The stressor identification framework for Mississippi involves six key steps: Define the impairment, List the candidate causes of impairment and develop a conceptual model, Compile all relevant data, Evaluate the data, Identify probable causes of impairment by using a weight-of-evidence approach, and Generate a report of results.

Mississippi↗

Concentrations of cadmium, lead, and zinc in fish from mining-influenced waters of northeastern Oklahoma: Sampling of blood, carcass, and liver for aquatic biomonitoring

The Tri-States Mining District (TSMD) of Missouri (MO), Kansas (KS), and Oklahoma (OK), USA, was mined for lead (Pb) and zinc (Zn) for more than a century. Mining ceased more than 30 years ago, but wastes remain widely distributed in the region, and there is evidence of surface- and groundwater contamination in the Spring River-Neosho River (SR-NR) system of northeastern OK. In October 2001, we collected a total of 74 fish from six locations in the SR-NR system that included common carp (Cyprinus carpio), channel- and flathead catfish (Ictalurus punctatus and Pylodictis olivaris), largemouth- and spotted bass (Micropterus salmoides and Micropterus punctulatus), and white crappie (Pomoxis annularis). We obtained additional fish from locations in MO that included three reference sites and one site that served as a "positive control" (heavily contaminated by Pb). Blood, carcass (headed, eviscerated, and scaled) and liver (carp only) samples were analyzed for cadmium (Cd), Pb, and Zn. Our objectives were to assess the degree to which fish from the OK portion of the SR-NR system are contaminated by these elements and to evaluate fish blood sampling for biomonitoring. Concentrations of Cd and Pb in carp and catfish from OK sites were elevated and Pb concentrations of some approached those of the highly contaminated site in MO, but concentrations in bass and crappie were relatively low. For Zn, correlations were weak among concentrations in the three tissues and none of the samples appeared to reflect site contamination. Variability was high for Cd in all three tissues of carp; differences between sites were statistically significant (p < 0.05) only for blood even though mean liver concentrations were at least 100-fold greater than those in blood. Blood concentrations of Cd and Pb were positively correlated (r 2 = 0.49 to 0.84) with the concentration of the same element in carp and catfish carcasses or in carp livers, and the corresponding multiple regression models were highly significant (p < 0.001). Our data indicate that potentially nonlethal blood sampling can be useful for monitoring of selected metals in carp, catfish, and perhaps other fishes. ?? 2005 Springer Science+Business Media, Inc.

Archives of Environmental Contamination and Toxico↗

New, dated small impacts on the South Polar Layered Deposits (SPLD), Mars, and implications for shallow subsurface properties

The Mars Reconnaissance Orbiter (MRO) Context Camera (CTX) imaged two newly formed impact craters on the South Polar Layered Deposits (SPLD) of Mars in 2018 and 2020. These two new craters, the first detected on the SPLD, measure ∼17 m and ∼48 m in diameter. Follow-up observations were conducted with the High Resolution Imaging Science Experiment (HiRISE), showing seasonal and interannual changes, and providing stereo coverage for the production of digital terrain models (DTMs). Mars Climate Sounder (MCS) data were obtained over the region of these new impacts, giving surface temperature information for the time interval before and after the impacts were detected. Taken together, the optical and infrared observations of these sites reveal craters largely consistent with the morphologies of other small, dated impact craters on Mars, and crater ejecta patterns that suggest a more dust/regolith-dominated upper few meters of the SPLD in contrast to mid-latitude buried ice and lobate debris aprons (LDAs). This supports previous conclusions that the SPLD may have an upper surface depleted in water ice relative to the North PLDs, possibly the result of a widespread deflation event.

Icarus↗

Effect of NOAA satellite orbital drift on AVHRR-derived phenological metrics

The U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center routinely produces and distributes a remote sensing phenology (RSP) dataset derived from the Advanced Very High Resolution Radiometer (AVHRR) 1-km data compiled from a series of National Oceanic and Atmospheric Administration (NOAA) satellites (NOAA-11, −14, −16, −17, −18, and −19). Each NOAA satellite experienced orbital drift during its duty period, which influenced the AVHRR reflectance measurements. To understand the effect of the orbital drift on the AVHRR-derived RSP dataset, we analyzed the impact of solar zenith angle (SZA) on the RSP metrics in the conterminous United States (CONUS). The AVHRR weekly composites were used to calculate the growing-season median SZA at the pixel level for each year from 1989 to 2014. The results showed that the SZA increased towards the end of each NOAA satellite mission with the highest increasing rate occurring during NOAA-11 (1989–1994) and NOAA-14 (1995–2000) missions. The growing-season median SZA values (44°–60°) in 1992, 1993, 1994, 1999, and 2000 were substantially higher than those in other years (28°–40°). The high SZA in those years caused negative trends in the SZA time series, that were statistically significant (at α = 0.05 level) in 76.9% of the CONUS area. A pixel-based temporal correlation analysis showed that the phenological metrics and SZA were significantly correlated (at α = 0.05 level) in 4.1–20.4% of the CONUS area. After excluding the 5 years with high SZA (>40°) from the analysis, the temporal SZA trend was largely reduced, significantly affecting less than 2% of the study area. Additionally, significant correlation between the phenological metrics and SZA was observed in less than 7% of the study area. Our study concluded that the NOAA satellite orbital drift increased SZA, and in turn, influenced the phenological metrics. Elimination of the years with high median SZA reduced the influence of orbital drift on the RSP time series.

International Journal of Applied Earth Observation↗

Evidence for intensification of the global water cycle: Review and synthesis

One of the more important questions in hydrology is: if the climate warms in the future, will there be an intensification of the water cycle and, if so, the nature of that intensification? There is considerable interest in this question because an intensification of the water cycle may lead to changes in water-resource availability, an increase in the frequency and intensity of tropical storms, floods, and droughts, and an amplification of warming through the water vapor feedback. Empirical evidence for ongoing intensification of the water cycle would provide additional support for the theoretical framework that links intensification with warming. This paper briefly reviews the current state of science regarding historical trends in hydrologic variables, including precipitation, runoff, tropospheric water vapor, soil moisture, glacier mass balance, evaporation, evapotranspiration, and growing season length. Data are often incomplete in spatial and temporal domains and regional analyses are variable and sometimes contradictory; however, the weight of evidence indicates an ongoing intensification of the water cycle. In contrast to these trends, the empirical evidence to date does not consistently support an increase in the frequency or intensity of tropical storms and floods.

Journal of Hydrology↗