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At least 1,009 records · Page 56Linked to original sources

Transcriptional changes in wild Yukon River Chinook Salmon associated with Ichthyophonus infections

Objective We compared differentially expressed genes in Chinook Salmon Oncorhynchus tshawytscha with three divergent Ichthyophonus statuses (undetected, subclinical infections, or clinical disease; n = 100) to investigate associated transcriptomic responses. Disease associated with the fish parasite Ichthyophonus sp. was first diagnosed in adult Chinook Salmon from the Yukon River in the late 1980s and has subsequently been implicated in premature host mortality. Methods Chinook Salmon tissue sample collections and Ichthyophonus infection data were leveraged from a multi-agency collaboration during summer 2022 at three locations along the main-stem Yukon River that spanned nearly 2,000 km of freshwater migration (lower, middle, and upper river). We sequenced the transcriptome and compared this to infection status based on routine diagnostic procedures. Results Among the 17,569 genes for which messenger RNA was detected, we identified a transcription signature in the skeletal muscle that was associated with Ichthyophonus infections and included 53 differentially expressed genes. The differentially expressed genes and their pathways included those known for involvement in immune functions, energy synthesis, cellular breakdown, and reproduction—all processes that are known to be influenced by senescence during spawning migrations. Conclusions Results demonstrate a clear transcriptional difference between diseased fish (clinical disease group) and those in which Ichthyophonus was undetected, including identifying candidate markers for infection in this population. These results provide a foundation for development of nonlethal biomarkers to evaluate potential Ichthyophonus infections in Chinook Salmon based on gene transcription, protein products, or gene variants (e.g., polymorphisms).

Journal of Aquatic Animal Health↗

Downslope Eulerian mean flow associated with high-frequency current fluctuations observed on the outer continental shelf and upper slope along the northeastern United States continental margin: Implications for sediment transport

Eulerian current measurements made 5-7 m above bottom at six stations along the United States east coast continental margin show a net downslope flow of 1-5 cm s-1. Although the scalar current speed decreases with water depth and toward the bottom, fluctuations in the cross-isobath flow were stronger and increasingly asymmetric near the bottom. Maximum downslope flow exceeded maximum upslope flow by a factor of two to three. The strength of the low-passed downslope flow was proportional to the upslope Reynolds flux of density as well as to the amplitude of the current fluctuations that have periods shorter than 30 h. These flow characteristics may be caused by differential vertical mixing in the bottom boundary layer where a stratified fluid flows upslope (unstable) and downslope (stable). The asymmetry in current strength clearly favors net downslope transport of sediments that move as bedload. ?? 1988.

Continental Shelf Research↗

Modeling water quality in the Anthropocene: Directions for the next-generation aquatic ecosystem models

“Everything changes and nothing stands still” (Heraclitus). Here we review three major improvements to freshwater aquatic ecosystem models — and ecological models in general — as water quality scenario analysis tools towards a sustainable future. To tackle the rapid and deeply connected dynamics characteristic of the Anthropocene, we argue for the inclusion of eco-evolutionary, novel ecosystem and social-ecological dynamics. These dynamics arise from adaptive responses in organisms and ecosystems to global environmental change and act at different integration levels and different time scales. We provide reasons and means to incorporate each improvement into aquatic ecosystem models. Throughout this study we refer to Lake Victoria as a microcosm of the evolving novel social-ecological systems of the Anthropocene. The Lake Victoria case clearly shows how interlinked eco-evolutionary, novel ecosystem and social-ecological dynamics are, and demonstrates the need for transdisciplinary research approaches towards global sustainability.

Current Opinion in Environmental Sustainability↗

Using Landsat satellite data to support pesticide exposure assessment in California

Background The recent U.S. Geological Survey policy offering Landsat satellite data at no cost provides researchers new opportunities to explore relationships between environment and health. The purpose of this study was to examine the potential for using Landsat satellite data to support pesticide exposure assessment in California. Methods and Results We collected a dense time series of 24 Landsat 5 and 7 images spanning the year 2000 for an agricultural region in Fresno County. We intersected the Landsat time series with the California Department of Water Resources (CDWR) land use map and selected field samples to define the phenological characteristics of 17 major crop types or crop groups. We found the frequent overpass of Landsat enabled detection of crop field conditions (e.g., bare soil, vegetated) over most of the year. However, images were limited during the winter months due to cloud cover. Many samples designated as single-cropped in the CDWR map had phenological patterns that represented multi-cropped or non-cropped fields, indicating they may have been misclassified. Conclusions We found the combination of Landsat 5 and 7 image data would clearly benefit pesticide exposure assessment in this region by 1) providing information on crop field conditions at or near the time when pesticides are applied, and 2) providing information for validating the CDWR map. The Landsat image time-series was useful for identifying idle, single-, and multi-cropped fields. Landsat data will be limited during the winter months due to cloud cover, and for years prior to the Landsat 7 launch (1999) when only one satellite was operational at any given time. We suggest additional research to determine the feasibility of integrating CDWR land use maps and Landsat data to derive crop maps in locations and time periods where maps are not available, which will allow for substantial improvements to chemical exposure estimation.

California↗

Integrating active restoration with environmental flows to improve native riparian tree establishment in the Colorado River Delta

Drastic alterations to river hydrology, land use change, and the spread of the nonnative shrub, tamarisk (Tamarix spp.), have led to the degradation of riparian habitat in the Colorado River Delta in Mexico. Delivery of environmental flows to promote native cottonwood (Populus spp.) and willow (Salix spp.) recruitment in human-impacted riparian systems can be unsuccessful due to flow-magnitude constraints and altered abiotic–biotic feedbacks. In 2014, an experimental pulse flow of water was delivered to the Colorado River in Mexico as part of the U.S.-Mexico binational agreement, Minute 319. We conducted a field experiment to assess the effects of vegetation removal, seed augmentation, and environmental flows, separately and in combination, on germination and first-year seedling establishment of cottonwood, willow, and tamarisk at five replicate sites along 5 river km. The relatively low-magnitude flow deliveries did not substantively restore natural fluvial processes of erosion, sediment deposition, and vegetation scour, but did provide wetted surface soils, shallow groundwater, and low soil salinity. Cottonwood and willow only established in wetted, cleared treatments, and establishment was variable in these treatments due to variable site conditions and inundation duration and timing. Wetted soils, bare surface availability, soil salinity, and seed availability were significant factors contributing to successful cottonwood and willow germination, while soil salinity and texture affected seedling persistence over the growing season. Tamarisk germinated and persisted in a wider range of environmental conditions than cottonwood and willow, including in un-cleared treatment areas. Our results suggest that site management can increase cottonwood and willow recruitment success from low-magnitude environmental flow events, an approach that can be applied in other portions of the Delta and to other human-impacted riparian systems across the world with similar ecological limitations.

Colorado River↗

Determining the drivers of suspended sediment dynamics in tidal marsh-influenced estuaries using high-resolution ocean color remote sensing

Sediment budgets are a critical metric to assess coastal marsh vulnerability to sea-level rise and declining riverine sediment inputs. However, calculating accurate sediment budgets is challenging in tidal marsh-influenced estuaries where suspended sediment concentrations (SSC) typically vary on scales of hours and meters, and where SSC dynamics are driven by a complex and often site-specific interplay of hydrodynamic and meteorological conditions. The mapping of SSC using ocean-color remote sensing is well established and can help capture the spatio-temporal variability needed to determine the dominant drivers regulating sediment budgets. However, the coarse spatial resolution of traditional ocean-color sensors (1-km) generally precludes their use in coastal-marsh estuaries. Here, using the Plum Island Estuary (Massachusetts, USA) as an example, we demonstrate that high-spatial-resolution maps of SSC derived from Landsat-8 Operational Land Imager (OLI) and Sentinel-2A/B Multispectral Instruments (MSI) can be used to determine the main drivers of SSC dynamics in tidal marsh-influenced estuaries, despite the long revisit time of these sensors. Local empirical algorithms between SSC and remote sensing reflectance were derived and applied to a total of 46 clear-sky scenes collected by the OLI and the MSI between 2013 and 2018. The analysis revealed that this 5-year record was sufficient to capture a representative range of meteorological and tidal conditions required to determine the main drivers of SSC dynamics in this mid-latitude system. The interplay between river and tidal flows dominated SSC dynamics in this estuary, whereas wind-driven resuspension had more moderate effects. The SSC were higher during spring because of increased river discharge due to snowmelt. Tidal asymmetry also enhanced sediment resuspension during flood tides, possibly favoring deposition on marsh platforms. Together, water level, water-level rate of change, river discharge and wind speed were able to explain > 60% of the variability in the main-channel thalweg-averaged SSC, thereby facilitating future prediction of SSC from these readily available variables. This study demonstrates that the existing multi-year records of high-resolution remote sensing can provide a representative depiction of SSC dynamics in hydrodynamically-complex and small-scale estuaries that moderate-resolution ocean color remote sensing and in situ measurements are unable to capture.

Massachusetts↗

Green River oil shale—concept of origin extended: An interdisciplinary problem being attacked from both ends

A much fuller understanding of the Green River oil shale and its organic chemistry will emerge when the geologists, paleontologists, organic chemists, biologists, paleolimnologists, and biogeochemists, who are now working on it, integrate their findings with those of the others. We know from the geology, paleontology, and paleolimnology that the biologic progenitors of the organic substance in the Green River oil shale could only have been microscopic algae, and other micro-organisms, that grew and accumulated in the central parts of large, shallow lakes that existed under a subtropical climate. The only nonlacustrine organic components were wind-blown, or water borne, pollens and waxy spores. These, however, made up a large and important part of the organic-rich sediment. The geology of the Green River Formation shows that as the algal and pollen-rich sediment was buried deeper and deeper, progressively more of its pore water and dissolved constituents were expressed. Static pressures may have reached as much as 210 kg cm −2 , and the ambient temperature rose, with depth, to somewhere within the range between 90° and 125° C. Beneath the ancient lakes a tectonically quiescent environment persisted for tens of millions of years after their organic sediments had been deeply buried. The organic material of the Green River oil shale can be divided into three fractions—a small bitumen fraction that is extractable with common organic solvents, a major fraction called koerogen that consists of insoluble pyrobitumens, and a somewhat smaller inert fraction that is neither soluble nor does it yield oil on pyrolysis. As all three fractions originated in the same algal, pollen-rich sediment, an explanation for their marked differences must be sought in their geochemical history or from a study of the modern analogues of their progenitors. The components of the bitumen fraction consisted of “biological markers” that were inherited from the Eocene plants and animals in which they originally formed. Diagenesis has changed these hydrogen-rich compounds, but not enough to obscure their provenance. Kerogen presumably became insoluble because its hydrogen-rich components polymerized. My speculation is that the inert fraction was derived from a polyphenolic substance produced in the original algal ooze by “non-enzymatic browning.” Only three Classes of non-marine algae need be considered as progenitors of the Green River oil shale; the Xanthophyceae, the Chlorophyceae, and the Cyanophyceae. Only the Cyanophyceae (the blue-green algae) meet the biologic and paleontologic requirements to have served as the dominant precursors of the Green River oil shale. Several other oil shales clearly were derived from the Xanthophyceae, specifically Botryococcus. The blue-green algal ooze now forming, and accumulating, in Mud Lake, Florida, has been studied biologically and chemically as a possible present-day analogue of the Green River oil shale precursor. In this small lake we have established the fact that a bacterial inhibitor is produced, which inhibits decay of the algae and thereby permits the accumulation of energy-rich organic compounds. We infer that a similar indigenous inhibitor must have acted in the Eocene lakes to permit them to become the huge energy sinks they were. Studies of the organic chemistry of living blue-green algae show that they contain appreciable percentages of fatty acids, hydrocarbons, and very large percentages of proteins. These promising, energy-rich compounds could serve as source materials for potential conversion into oil shale in the geologic future. Certain marine anaerobic bacteria convert fatty acids into aliphatic hydrocarbons. Fresh-water obligate anaerobes should be investigated to see if they also convert fatty acids into hydrocarbons. The part played by aquatic animals that live in, or on, freshwater algal ooze in synthesizing hydrocarbons has not been investigated, but deserves attention. Pollen grains, of course, must be considered an important precursor of hydrocarbons produced on pyrolysis. They contain far higher percentages of long chain hydrocarbons and alcohols than most plant materials. The major problem ahead is to account for the progressive hydrogenation and subsequent polymerization of the relatively oxygen-rich constituents of algae such as the polysaccharides, amino acids, ammo sugars, and fatty acids into the insoluble pyrobitumens that constitute, particularly, the kerogen fraction of the Green River oil shale.

Wyoming↗

Gold deposits in the Xiaoqinling-Xiong'ershan region, Qinling mountains, central China

The gold-rich Xiaoqinling-Xiong'ershan region in eastern Shaanxi and western Henan provinces, central China, lies about 30-50 km inland of the southern margin of the North China craton. More than 100 gold deposits and occurrences are concentrated in the Xiaoqinling (west), Xiaoshan (middle), and Xiong'ershan (east) areas. Late Archean gneiss of the Taihua Group, and Middle Proterozoic metavolcanic rocks of the Xiong'er Group are the main host rocks for the deposits. Mesozoic granitoids (ca. 178-104 Ma) are present in most gold districts, but deposits are typically hosted in the Precambrian basement rocks hundreds of meters to as far as 10 km from the intrusions and related hornfels zones. Deposits in the Xiaoqinling and Xiaoshan areas are best classified as orogenic gold deposits, with ores occurring in a number of distinct belts both in quartz veins and disseminated in altered metamorphic rocks. Alteration assemblages are dominated by quartz, sericite, pyrite, and carbonate minerals. The ore-forming fluids were low salinity, CO2-rich, and characterized by isotopically heavy ??18O. Four deposits (Dongchuang, Wenyu, Yangzhaiyu, and Dahu) in the Xiaoqinling area each contain resources of about 1 Moz Au. Some of the gold deposits in the Xiong'ershan area represent more shallowly emplaced tellurium-enriched orogenic systems, which include resources of approximately 1-1.5 Moz Au at Shanggong and Beiling (or Tantou). Others are epithermal deposits (e.g., Qiyugou and Dianfang) that are hosted in volcanic breccia pipes. Isotopic dates for all gold deposits, although often contradictory, generally cluster between 172-99 Ma and are coeval with emplacement of the post-kinematic granitoids. The gold deposits formed during a period of relaxation of far-field compressional stresses, clearly subsequent to the extensive Paleozoic-early Mesozoic accretion of are terranes and the Yangtze craton onto the southern margin of the North China craton. Hydrothermal and magmatic events occurred locally where extension-related Precambrian basement uplifting took place along the craton margin. Fluids for the orogenic gold deposits in the Xiaoqinling, Xiaoshan, and Xiong'ershan areas may have been released from evolving magmas or resulted from prograde metamorphic reactions within the uplift zones. Alternatively, for the epithermal gold deposits at shallower levels in the Xiong'ershan area, gold-transporting fluids were mainly exsolved from coeval magmas, although meteoric water was also involved in these hydrothermal systems.

Mineralium Deposita↗

Carbon stock trends of baldcypress knees along climate gradients of the Mississippi River Alluvial Valley using allometric methods

Carbon stock trends of the knees of Taxodium distichum likely vary across climate gradients of the southeastern United States and contribute an unknown quantity of “teal” carbon to inland freshwater wetlands. Knee metrics (e.g., density, height, biomass) were measured in mixed T. distichum swamps across the Mississippi River Alluvial Valley (MRAV) from Illinois to Louisiana. Based on their geometric similarity to a cone, the biomasses of field knees were estimated by relating the volume of their measured field dimensions to lab-measured water displacement volume and biomass via volume/mass regressions (biomass (g) = 7.2230149 + 0.292902 × volume). Knees had greater height in flooded conditions (maximum height = 163 cm; Goose Lake, Arkansas), and also in climate normal environments of mid-range precipitation and temperature (p < 0.0001). Overall, knee biomass ha−1 was 7.5 times greater in flooded vs. not flooded conditions (34.6 ± 7.3 vs. 4.6 ± 1.0 Mg ha−1, respectively). The overall mean of knee carbon biomass stock was substantial (flooded vs. not flooded conditions: 18.1 ± 3.7 Mg C ha−1 to 2.9 ± 0.7 Mg C ha−1, respectively; knee/tree live standing biomass: 17.9–5.2%, respectively). Clearly, T. distichum knees should not be ignored in blue (teal) carbon discussions of wetlands. Because knees respond to climate normal conditions, hotter/drier environments in the MRAV could lead to a decline in the contribution of knee carbon stock in the southeastern United States.

Mississippi River Alluvial Valley↗

Trends in concentrations of polychlorinated biphenyls in fish tissue from selected sites in the Delaware River basin in New Jersey, New York, and Pennsylvania, 1969-98

Polychlorinated biphenyl (PCB) concentrations in fish tissue collected during the 1990's from selected sites in the Delaware River Basin were compared with concentrations in fish tissue collected during 1969-88. Data collected by State and Federal agencies on concentrations in whole-body common carp ( Cyprinus carpio ) and white sucker ( Catostomus commersoni ), and edible portions of American eel ( Anguilla rostrata ), smallmouth bass ( Micropterus dolomieu ), and channel catfish ( Ictalurus punctatus ) during 1969-98 were compiled to define temporal trends in concentrations of PCBs in fish tissue from selected segments of the Delaware River, Lehigh River, Schuylkill River, and Brandywine Creek. The Delaware River in the vicinity of Trenton, New Jersey and Yardley, Pennsylvania (above the tidal influence) had the largest long-term data set among the sites considered for this study and was the only site with sufficient data for statistical analysis. A general pattern of decline in PCB concentrations during 1969-98 was apparent for this river segment. PCB concentrations in whole-body white sucker from this lower Delaware River segment declined during 1969-98 from a highest concentration of 7 micrograms per gram ( μ g/g, wet weight) in a sample collected during 1972 to 0.26 μ g/g (wet weight) in a sample collected during 1998. PCB concentration was negatively correlated with year (Spearman rank correlation -0.46, p < 0.08, n = 15); especially after removal of a sample from 1977 with an unusually low concentration (Spearman rank correlation -0.53, p = 0.05, n = 14). PCB concentrations in edible flesh of American eel declined during 1975-95, from a highest concentration of 3.8 μ g/g (wet weight) in a sample collected during 1976 to less than the reporting limit of 0.26 μ g/g (wet weight) in samples collected during 1993 and 1995. PCB concentrations in most samples (for species considered in this study) collected from the lower Delaware River exceeded the National Academy of Sciences and National Academy of Engineering (NAS/NAE) wildlife guideline level of 0.5 μ g/g during the 1970's and 1980's, and decreased to below this level during the 1990's. No samples of edible portions of game fish exceeded the U.S. Food and Drug Administration (FDA) tolerance level by the mid 1980's. However, the PCB concentration in a smallmouth bass fillet sample that was collected during 1998 (0.37 μ g/g) exceeded the Pennsylvania fish-consumption advisory level of 0.06 μ g/g, and the concentrations in whole-body common carp and white sucker collected during 1998 (1.10 μ g/g and 0.26 μ g/g, respectively) exceeded the New York State Department of Environmental Conservation wildlife criterion concentration of 0.11 μ g/g. (The concentration in carp also exceeded the 1973 NAS/NAE wildlife guideline concentration of 0.5 μ g/g.) Graphical analysis of PCB concentrations in whole white sucker and (or) edible portions of American eel from the upper Delaware River, lower Delaware River, middle Schuylkill River, and Brandywine Creek indicate a decline from the 1970's and (or) 1980's to the middle to late 1990's. Temporal trends in PCB concentrations in white sucker samples from the lower Lehigh and Schuylkill Rivers during 1979-98 are less clear; the PCB concentration (wet-weight basis) from a sample collected in 1998 from the lower Lehigh River was similar to that from a sample collected in 1979, and concentrations actually increased during 1982-98. Similarly, PCB concentrations in samples of white sucker and American eel from the lower Schuylkill River were highly variable over time.

New Jersey, New York, Pennsylvania↗

Introduction to watershed ecosystem services: Chapter 1

Humans derive a great number of goods and services from terrestrial ecosystems (Millennium Ecosystem Assessment, 2003, 2005). Some, like timber, fruits, bush meat, and other forest based food stuffs, are evident but others are not so obvious. Increasingly policy makers have realized the importance of forests and other ecosystems in sequestering carbon, as clearing of once vibrant vegetation or draining of swamps releases carbon dioxide (U.S. DOE, 2012) and where planting trees – particularly in the tropics - takes carbon dioxide out of the atmosphere (Bala et al., 2007). Scientists and conservationists have long called our attention to the value of Neotropical landscapes for biodiversity conservation as forests and other ecosystems harbor vast numbers of species. In recent decades conservationists and policy makers have also highlighted the potential of forests and other ecosystems to regulate stream flows (Ibáñez et al., 2002, Laurance, 2007 but also see Calder et al., 2007) and play a role in assuring clean water (Uriarte et al., 2011). All of these goods and services are part of what is collectively referred to as ecosystem services or goods and services that are provided to humanity through the unimpeded natural function of the ecosystem.

Book chapter↗

Field soil aggregate stability kit for soil quality and rangeland health evaluations

Soil aggregate stability is widely recognized as a key indicator of soil quality and rangeland health. However, few standard methods exist for quantifying soil stability in the field. A stability kit is described which can be inexpensively and easily assembled with minimal tools. It permits up to 18 samples to be evaluated in less than 10 min and eliminates the need for transportation, minimizing damage to soil structure. The kit consists of two 21×10.5×3.5 cm plastic boxes divided into eighteen 3.5×3.5 cm sections, eighteen 2.5-cm diameter sieves with 1.5-mm distance openings and a small spatula used for soil sampling. Soil samples are rated on a scale from one to six based on a combination of ocular observations of slaking during the first 5 min following immersion in distilled water, and the percent remaining on a 1.5-mm sieve after five dipping cycles at the end of the 5-min period. A laboratory comparison yielded a correlation between the stability class and percent aggregate stability based on oven dry weight remaining after treatment using a mechanical sieve. We have applied the method in a wide variety of agricultural and natural ecosystems throughout western North America, including northern Mexico, and have found that it is highly sensitive to differences in management and plant community composition. Although the field kit cannot replace the careful laboratory-based measurements of soil aggregate stability, it can clearly provide valuable information when these more intensive procedures are not possible.

Catena↗

Quantification of metal loading using tracer dilution and instantaneous synoptic sampling and importance of diel cycling in Leavenworth Creek, Clear Creek County, Colorado, 2012

Leavenworth Creek, a tributary of South Clear Creek and Clear Creek near Georgetown, Colorado, contains copper, lead, and zinc at concentrations close to or in excess of aquatic-life standards. In the summer of 2012, the U.S. Geological Survey, in cooperation with the U.S. Department of Agriculture Forest Service and the Colorado Division of Reclamation, Mining and Safety, conducted monitoring to (1) quantify the effects of diel cycling and perform synoptic sampling in a way to minimize those effects, (2) separate “point” or distinct single tributaries or sources of load from diffuse load sources along the study reach to aid remediation planning, and (3) quantify metal loading from transmountain diversion of water from Peru Creek through the Vidler Tunnel into Leavenworth Creek. The study included monitoring for diel cycles in June 2012 and diel and synoptic sampling in August 2012 along an approximately 2-kilometer stream reach. Synoptic samples were collected at 26 stream and 35 inflow, tributary, mine waste seep, and mine tunnel sites from August 28 to 30, 2012. In June 2012, temperature, dissolved oxygen, and pH showed strong diel signals at two sites in Leavenworth Creek, with temperature and pH having minimum values near dawn and maximum values during the afternoon and dissolved oxygen having maximum values in the early morning and minimum values in late afternoon. Concentrations of zinc, cadmium, cobalt, manganese, and yttrium showed strong diel fluctuations at both sites with minimum concentrations during daytime and maximum concentrations during nighttime. Because of these diel cycles, all stream sites were sampled during synoptic sampling at 1200 hours on August 30, 2012. During synoptic sampling from August 28 to 30, 2012, zinc showed maximum concentrations at nighttime and minimum concentrations at midday and diel variation ranged from 26 to 33 percent. Inflows from the Wilcox Tunnel and Waldorf seep area were the greatest source of zinc load to the stream (about 45 percent), and a left-bank inflow in the dispersed tailings area was the greatest source of lead (about 45 percent) and manganese (about 25 percent) loads to the stream, and a secondary source for zinc (about 40 percent). Copper load was almost equally divided (about 35 percent) between these two sources. Diffuse loading, likely from left-bank sources, was evident for copper, lead, manganese, and zinc in the stream reach from approximately 800 to 1,200 meters, and for copper, lead, and, to a lesser extent, manganese in the reach containing left-bank dispersed tailings (from approximately 1,300 to 1,800 meters). The load values reported herein are minimum estimates because the stream synoptic samples were collected at 1200 hours when positively charged elements, including copper, lead, manganese, and zinc, have minimum concentrations. Diel patterns measured for zinc during the synoptic sampling indicate maximum daily zinc loads were as much as 33 percent greater than those measured at 1200 hours on August 30, 2012. Transmountain diversion of water through Vidler Tunnel negatively affects water quality in Leavenworth Creek as indicated by much greater metal loads and concentrations and a visually evident mixing zone where Vidler Tunnel water joins Leavenworth Creek when diversion is active compared to when it is not.

Colorado↗

Identification of seasonal streamflow regimes and streamflow drivers for daily and peak flows in Alaska

Alaska is among northern high‐latitude regions where accelerated climate change is expected to impact streamflow properties, including seasonality and primary flow drivers. Evaluating changes to streamflow, including flood characteristics, across this large and diverse environment can be improved by identifying the distribution and influence of flow drivers. Using metrics of mean monthly streamflow data from 253 streamgages, seasonal flow regimes were clustered to guide identification of seasonal‐flow drivers and form hydrologic groups for identification of peak‐flow populations. Nine seasonally distinct subclasses described variability within three classes dominated by (mostly fall) rainfall, (spring) snowmelt, and (summer) high‐elevation melt. The most glacierized basins exclusively grouped into high‐elevation melt subclasses, and less glacierized basins sometimes exhibited seasonal patterns aligned with rainfall‐ and snowmelt‐dominated regimes. Peak‐flow populations varied by subclass from dominant rainfall or dominant snowmelt to mixed rainfall‐snowmelt or mixed rainfall, snowmelt, and high‐elevation melt. Within subclasses, rainfall generated higher mean peak flows (relative to mean annual flow) than snowmelt or high‐elevation melt. Seasonal flow regimes showed clear but complex associations with basin characteristics, primarily elevation and winter temperature, and with geographic location. These dependencies provided elevation‐based analogies for changes associated with warming and insights for seasonal flow regime prediction and hydrologic region delineation. These results provide a spatially comprehensive perspective on seasonal streamflow drivers across Alaska from historical data and serve as an important historical basis for analysis.

Alaska↗

Monitoring vegetation response to episodic disturbance events by using multitemporal vegetation indices

Normalized Difference Vegetation Index (NDVI) derived from MODerate-resolution Imaging Spectroradiometer (MODIS) satellite imagery and land/water assessments from Landsat Thematic Mapper (TM) imagery were used to quantify the extent and severity of damage and subsequent recovery after Hurricanes Katrina and Rita of 2005 within the vegetation communities of Louisiana's coastal wetlands. Field data on species composition and total live cover were collected from 232 unique plots during multiple time periods to corroborate changes in NDVI values over time. Aprehurricane 5-year baseline time series clearly identified NDVI values by habitat type, suggesting the sensitivity of NDVI to assess and monitor phenological changes in coastal wetland habitats. Monthly data from March 2005 to November 2006 were compared to the baseline average to create a departure from average statistic. Departures suggest that over 33% (4,714 km 2 ) of the prestorm, coastal wetlands experienced a substantial decline in the density and vigor of vegetation by October 2005 (poststorm), mostly in the east and west regions, where landfalls of Hurricanes Katrina and Rita occurred. The percentage of area of persistent vegetation damage due to long-lasting formation of new open water was 91.8% in the east and 81.0% and 29.0% in the central and west regions, respectively. Although below average NDVI values were observed in most marsh communities through November 2006, recovery of vegetation was evident. Results indicated that impacts and recovery from large episodic disturbance events that influence multiple habitat types can be accurately determined using NDVI, especially when integrated with assessments of physical landscape changes and field verifications.

Louisiana↗

An evaluation of the applicability of the telluric-electric and audio-magnetotelluric methods to mineral assessment on the Arabian Shield, Kingdom of Saudi Arabia

Feasibility studies of two electromagnetic methods were made in selected areas of the Jabal Hibshi (1:250,000) quadrangle, 26F, in the Kingdom of Saudi Arabia in March of 1983. The methods tested were the natural source-field telluricelectric and audio-magnetotelluric methods developed and extensively used in recent years by the U.S. Geological Survey in some of its domestic programs related to geothermal and mineral resource assessment. Results from limited studies in the Meshaheed district, the Jabal as Silsilah ring complex, and across a portion of the Raha fault zone clearly demonstrate the appropriateness of these sub-regional scale, reconnaissance-type studies to mineral resource assessment. The favorable results obtained are largely attributed to distinctive and large contrasts in the electrical resistivity of the major rock types encountered. It appears that the predominant controlling factor governing the rock resistivities is the amount of contained clay minerals. Accordingly, unaltered (specifically, non-argillic) igneous and metamorphic rocks have very high resistivities; metasedimentary rocks of the Murdama group that contain several percent clay minerals have intermediate values of resistivity; and highly altered rocks, containing abundant clay minerals, have very low values of resistivity. Water-filled fracture porosity may be a secondary, but important, factor in some settings. However, influences from variations in interstitial or intercrystalline, water-filled porosity are probably small because these types of porosity are generally low. It is reasonable to expect similar results in other areas within the Arabian Shield.

Open-File Report↗

High-resolution sclerochronological analysis of the bivalve mollusk Saxidomus gigantea from Alaska and British Columbia: techniques for revealing environmental archives and archaeological seasonality

The butter clam, Saxidomus gigantea, is one of the most commonly recovered bivalves from archaeological shell middens on the Pacific Coast of North America. This study presents the results of the sclerochronology of modern specimens of S. gigantea, collected monthly from Pender Island (British Columbia), and additional modern specimens from the Dundas Islands (BC) and Mink and Little Takli Islands (Alaska). The methods presented can be used as a template to interpret local environmental conditions and increase the precision of seasonality estimates in shellfish using sclerochronology and oxygen isotope analysis. This method can also identify, with a high degree of accuracy, the date of shell collection to the nearest fortnightly cycle, the time of day the shell was collected and the approximate tidal elevation (i.e., approx. water depth and distance from the shoreline) from which the shell was collected. Life-history traits of S. gigantea were analyzed to understand the timing of growth line formation, the duration of the growing season, the growth rate, and the reliability of annual increments. We also examine the influence of the tidal regime and freshwater mixing in estuarine locations and how these variables can affect both incremental structures and oxygen isotope values. The results of the sclerochronological analysis show that there is a latitudinal trend in shell growth that needs to be considered when using shells for seasonality studies. Oxygen isotope analysis reveals clear annual cycles with the most positive values corresponding to the annual winter growth lines, and the most negative values corresponding to high temperatures during the summer. Intra-annual increment widths demonstrate clear seasonal oscillations with broadest increments in summer and very narrow increments or no growth during the winter months. This study provides new insights into the biology, geochemistry and seasonal growth of S. gigantea, which are crucial for paleoclimate reconstructions and interpreting seasonality patterns of past human collection.

Alaska;British Columbia↗

Spatiotemporal variability of inorganic nutrients during wastewater effluent dominated streamflow conditions in Indian Creek, Johnson County, Kansas, 2012–15

Nutrients, particularly nitrogen and phosphorus, are a leading cause of water-quality impairment in Kansas and the Nation. Indian Creek is one of the most urban drainage basins in Johnson County, Kansas, and environmental and biological conditions are affected by contaminants from point and other urban sources. The Johnson County Douglas L. Smith Middle Basin (hereinafter Middle Basin) wastewater treatment facility (WWTF) is the largest point-source discharge on Indian Creek. A second facility, the Tomahawk Creek WWTF, discharges into Indian Creek approximately 11.6 kilometers downstream from the Middle Basin WWTF. To better characterize the spatiotemporal variability of nutrients in Indian Creek, the U.S. Geological Survey, in cooperation with the Kansas Department of Health and Environment and Johnson County Wastewater, collected high-resolution spatial and temporal (a large number of samples collected over the entire reach or at single locations over a long period of time) inorganic nutrient (nitrate plus nitrite and orthophosphorus) data using a combination of discrete samples and sensor-measured data during 2012 through 2015. Nutrient patterns observed in Indian Creek along the upstream-downstream gradient during wastewater effluent dominated streamflow conditions were largely affected by the WWTFs and by travel time of the parcels of water. Nitrate plus nitrite concentrations in the Middle Basin WWTF effluent and at downstream sites varied by as much as 6 milligrams per liter over a 24-hour period. The cyclical variability in the Middle Basin WWTF effluent generated a nitrate plus nitrite pulse that could be tracked for approximately 11.5 kilometers downstream in Indian Creek, until the effect was masked by the Tomahawk Creek WWTF effluent discharge. All longitudinal surveys showed the same general patterns along the upstream-downstream gradient, though streamflows, wastewater effluent contributions to streamflow, and nutrient concentrations spanned a wide range. Differences in orthophosphorus and nitrate plus nitrite patterns were clear along the upstream-downstream gradient in Indian Creek, and orthophosphorus concentrations were not as variable as nitrate plus nitrite concentrations. In general, nitrate plus nitrite concentrations decreased downstream from the Middle Basin WWTF to minima near the confluence with Tomahawk Creek, increased downstream from the Tomahawk Creek WWTF, and then varied little within the study reach. Orthophosphorus concentrations generally decreased downstream from the Middle Basin WWTF. Despite the marked variability in nitrate plus nitrite concentrations caused by the Middle Basin WWTF effluent discharges, decreases in nitrate plus nitrite concentrations were discernable along the study reach between the two WWTFs. Decreases in nitrate plus nitrite concentrations along study reach were less variable than the cyclical variability typically measured, reiterating the effect of the Middle Basin WWTF effluent discharges on the spatiotemporal variability of nitrate plus nitrite in Indian Creek. Although decreases and rates of change in nitrate plus nitrite concentration were similar between the upper and lower reaches of Indian Creek, relations with initial nitrate plus nitrite concentrations and seasonal patterns were different between the upper (from College to the Marty study sites) and lower reaches (from Marty to the Mission Farms study sites) and did not reflect patterns observed for the overall reach. Quantifying the decreases in nitrate plus nitrite concentration caused by dilution and other in-stream processes were beyond the scope of this study, and were limited by available data. The data that are available suggest that dilution and other in-stream processes play a role in decreasing nitrate plus nitrite concentrations downstream from the Middle Basin WWTF in Indian Creek. Analysis of the spatiotemporal variability of nutrients focused on below-normal and normal streamflow conditions, when streamflow and nutrient conditions in Indian Creek were largely controlled by WWTF effluent flows and nutrient removal processes. Spatial and temporal data indicate there are decreases in nutrient concentrations along the upstream-downstream gradient in Indian Creek, but quantifying decreases is complicated by the variability in nutrient concentrations caused by the WWTFs. During below-normal and normal streamflow conditions, Indian Creek nutrient concentrations downstream from the Middle Basin WWTF primarily reflect effluent concentrations in the hours or days before depending on relative distance downstream.

Kansas↗