Search USGS⌕ Search

SEARCH · Search USGS

Results for “Clear Waters”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 937 records · Page 52Linked to original sources
USGS2020

Mitochondrial genome diversity and population mitogenomics of Polar cod (Boreogadus saida) and Arctic dwelling gadoids

High-latitude fish typically exhibit a narrow thermal tolerance window, which may pose challenges when coping with temperatures that shift outside of a species’ range of tolerance. Due to its role in aerobic metabolism and energy balance, the mitochondrial genome is likely critical for the acclimation and adaptation to differing temperature regimes in marine ectotherms. As oceans continue to warm, there is growing need to understand the ability of organisms to respond to changing environmental conditions given evidence that some species, in particular cold-water species, may already be experiencing difficulties. To assess how Arctic gadids in Alaska have responded to differential thermal preferences in the past and how regions are interconnected, we sequenced complete mitochondrial genomes for four Arctic gadids to determine the distribution of mitochondrial diversity and population-level structure as well as to detect signatures of selection acting on the mitochondrial genome. We found little population-level structure within all four species with the clear exception of Gulf of Alaska saffron cod ( Eleginus gracilis ). Northern localities exhibited higher levels of genetic diversity and primarily northern lineages were observed within polar cod ( Boreogadus saida ) and saffron cod, likely reflecting asymmetrical dispersal and potentially admixture of distinct lineages via ocean currents. The main evolutionary force shaping the evolution of the mitogenome appears to be purifying selection, but we also identified potential positive selection of candidate amino acid replacements primarily in complex I (ND genes) in polar cod. The high levels of mitochondrial diversity observed in our study and large population size may provide this species with the ability to respond evolutionarily (i.e. long-term) to a changing environment.

Alaska↗
USGS1991

Rare earth elements in Japan Sea sediments and diagenetic behavior of Ce/Ce∗: results from ODP Leg 127

The relative effects of paleoceanographic and paleogeographic variations, sediment lithology, and diagenetic processes on the recorded rare earth element (REE) chemistry of Japan Sea sediments are evaluated by investigating REE total abundances and relative fractionations in 59 samples from Ocean Drilling Program Leg 127. REE total abundances (ΣREE) in the Japan Sea are strongly dependent upon the paleoceanographic position of a given site with respect to terrigenous and biogenic sources. REE concentrations at Site 794 (Yamato Basin) overall correspond well to aluminosilicate chemical indices and are strongly diluted by SiO 2 within the late Miocene-Pliocene diatomaceous sequence. Eu/Eu* values at Site 794 reach a maximum through the diatomaceous interval as well, most likely suggesting an association of Eu/Eu* with the siliceous component, or reflecting slight incorporation of a detrital feldspar phase. ΣREE at Site 795 (Japan Basin) also is affiliated strongly with aluminosilicate phases, yet is diluted only slightly by siliceous input. At Site 797 (Yamato Basin), REE is not as clearly associated with the aluminosilicate fraction, is correlated moderately to siliceous input, and may be sporadically influenced by detrital heavy minerals originating from the nearby rifted continental fragment composing the Yamato Rise. The biogenic influence is largest at Site 794, moderately developed at Site 797, and of only minor importance at Site 795, reflecting basinal contrasts in productivity such that the Yamato Basin records greater biogenic input than the Japan Basin, while the most productive waters overlie the easternmost sequence of Site 794. Ce/Ce* profiles at all three sites increase monotonically with depth, and record progressive diagenetic LREE fractionation. The observed Ce/Ce* record does not respond to changes in oxygenation state of the overlying water, and Ce/Ce* correlated slightly better with depth than with age. The downhole increase in Ce/Ce* at Site 794 and Site 797 is a passive response to diagenetic transfer of LREE (except Ce) from sediment to interstitial water. At Site 795, the overall lack of correlation between Ce/Ce* and L (l n /Yb n suggests that other processes are occurring which mask the diagenetic behavior of all LREEs. First-order calculations of the Ce budget in Japan Sea waters and sediment indicate that ~20% of the excess Ce adsorbed by settling particles is recycled within the water column, and that an additional ~38% is recycled at or near the seafloor (data from Masuzawa and Koyama, 1989). Thus, because the remaining excess Ce is only ~10% of the total Ce, there is not a large source of Ce to the deeply buried sediment, further suggesting that the downhole increase in Ce/Ce* is a passive response to diagenetic behavior of the other LREEs. The REE chemistry of Japan Sea sediment therefore predicts successive downhole addition of LREEs to deeply-buried interstitial waters.

Geochimica et Cosmochimica Acta↗
USGS2022

Quantifying large-scale continental shelf margin growth and dynamics across mid-Cretaceous Arctic Alaska with detrital zircon U-Pb dating

Sequence stratigraphy provides a unifying framework for integrating diverse observations to interpret sedimentary basin evolution; however, key time assumptions about stratigraphic elements spanning hundreds of kilometers are rarely quantified. We integrate new detrital zircon U-Pb (DZ) dates from 28 samples with seismic mapping to establish a chronostratigraphic framework across 800 km and ~20 m.y. for the middle-Cretaceous Torok-Nanushuk clinothem of Arctic Alaska (USA). Shelf-margin DZ dates indicate continent-scale sediment routing with Russian Chukotka provenance and provide reliable maximum depositional ages derived from arc volcanism. Shelf-margin advance rates display a clear relationship to toplap trajectories and provide empirical support for long-held inferences linking sediment supply to margin architecture. Two distinct shelf-margin growth regimes are evident: (1) a ca. 115–107 Ma phase of rapid ~50 km/m.y. shelf advance rates with mainly progradational trajectories; and (2) a ca. 107–98 Ma phase of moderate ~13 km/m.y. shelf advance rates with progradational-retrogradational-aggradational trajectories. We established a subsequent shelf–to–deep water correlation by independently dating ca. 98–95 Ma low shelf accommodation and basin-floor deposition as far as 240 km east that indicate lowstand shedding and a change to localized routing with Brooks Range provenance. Finally, we dated a ca. 95 Ma basin-wide transgression at deep-water to shelfal settings across 350 km that exhibits apparent synchroneity consistent with an event-significant surface. In one of the world’s largest foreland-basin clinothems, our work constrains the timing and duration of key depositional elements to test large-scale sequence stratigraphic assumptions, enables reliable correlation and quantification of sediment dynamics across 800 km, and captures the chronology of a giant regressive-transgressive cycle.

Alaska↗
USGS2016

Holocene climate changes in eastern Beringia (NW North America) – A systematic review of multi-proxy evidence

Reconstructing climates of the past relies on a variety of evidence from a large number of sites to capture the varied features of climate and the spatial heterogeneity of climate change. This review summarizes available information from diverse Holocene paleoenvironmental records across eastern Beringia (Alaska, westernmost Canada and adjacent seas), and it quantifies the primary trends of temperature- and moisture-sensitive records based in part on midges, pollen, and biogeochemical indicators (compiled in the recently published Arctic Holocene database, and updated here to v2.1). The composite time series from these proxy records are compared with new summaries of mountain-glacier and lake-level fluctuations, terrestrial water-isotope records, sea-ice and sea-surface-temperature analyses, and peatland and thaw-lake initiation frequencies to clarify multi-centennial- to millennial-scale trends in Holocene climate change. To focus the synthesis, the paleo data are used to frame specific questions that can be addressed with simulations by Earth system models to investigate the causes and dynamics of past and future climate change. This systematic review shows that, during the early Holocene (11.7–8.2 ka; 1 ka = 1000 cal yr BP), rather than a prominent thermal maximum as suggested previously, temperatures were highly variable, at times both higher and lower than present (approximate mid-20th-century average), with no clear spatial pattern. Composited pollen, midge and other proxy records average out the variability and show the overall lowest summer and mean-annual temperatures across the study region during the earliest Holocene, followed by warming over the early Holocene. The sparse data available on early Holocene glaciation show that glaciers in southern Alaska were as extensive then as they were during the late Holocene. Early Holocene lake levels were low in interior Alaska, but moisture indicators show pronounced differences across the region. The highest frequency of both peatland and thaw-lake initiation ages also occurred during the early Holocene. During the middle Holocene (8.2–4.2 ka), glaciers retreated as the regional average temperature increased to a maximum between 7 and 5 ka, as reflected in most proxy types. Following the middle Holocene thermal maximum, temperatures decreased starting between 4 and 3 ka, signaling the onset of Neoglacial cooling. Glaciers in the Brooks and Alaska Ranges advanced to their maximum Holocene extent as lakes generally rose to modern levels. Temperature differences for averaged 500-year time steps typically ranged by 1–2 °C for individual records in the Arctic Holocene database, with a transition to a cooler late Holocene that was neither abrupt nor spatially coherent. The longest and highest-resolution terrestrial water isotope records previously interpreted to represent changes in the Aleutian low-pressure system around this time are here shown to be largely contradictory. Furthermore, there are too few records with sufficient resolution to identify sub-centennial-scale climate anomalies, such as the 8.2 ka event. The review concludes by suggesting some priorities for future paleoclimate research in the region.

Quaternary Science Reviews↗
USGS2024

ENSO-based outlook of droughts and agricultural outcomes in Afghanistan

Drought is one of the key drivers of food insecurity in Afghanistan, which is among the most food insecure countries in the world. In this study, we build on previous research and seek to answer the central question: “What is the influence of El Niño-Southern Oscillation (ENSO) on drought outlooks and agricultural yield outcome in Afghanistan, and how do these influences vary spatially ?” We do so by utilizing multiple indicators of droughts and available wheat yield reports. We find a clear distinction in the probability of drought (defined as being in the lower tercile) in Afghanistan during La Niña compared to El Niño events since 1981. The probability of drought in Afghanistan increased during La Niña, particularly in the North, Northeast, and West regions. La Niña events are related to an increase in the probability of snow drought, particularly in parts of the Amu Darya basin. It is found that relative to El Niño events, snow water equivalent [total runoff] during La Niña events January–March (March–July total runoff) decreases between 9% and 30% (28%–42%) for the five major basins in the country. The probability of agricultural drought during La Niña events is found to be higher than 70% in the rainfed and irrigated areas of the Northeast, North, and West regions. This result is at least partly supported by reported wheat yield composites related to La Niña events that tend to be lower than for El Niño events across all regions in the case of rainfed wheat (statistically significant in Northeast, West, and South regions) and in some cases for irrigated wheat. The results of this study have direct implications for improving early warning of worsening food insecurity in Afghanistan during La Niña events, given that we now have long-lead and skillful forecasts of ENSO up to 18–24 months in advance, which could potentially be used to provide earlier warning of worsening food insecurity in Afghanistan

Weather and Climate Extremes↗
USGS1998

The last interglaciation at Owens Lake, California; Core OL-92

Owens Lake, located at the eastern base of the central Sierra Nevada (Fig. 1), was the terminus of the Owens River prior to the lake's complete desiccation shortly after 1913 due to river diversion by the City of Los Angeles. During earlier wetter cycles, the lake overflowed to fill a series of downstream basins including China Lake Basin, Searles Valley, Panamint Valley, and ultimately, Death Valley (Smith and Street-Perrott, 1983). In 1992 the U.S. Geological Survey drilled a 323-m-deep core (OL-92) into Owens Lake sediments near the depocenter of the basin to obtain a continuous record of silty-clay sediment spanning the last 800,000 yrs. A multi-parameter reconnaissance study of the entire core (ca 7000-yr resolution), was reported in a 13-chapter summary volume (Smith and Bischoff, 1997). A document containing the numerical and other detailed forms of raw data collected by that volume's authors was prepared earlier (Smith and Bischoff, 1993). The reconnaissance study provided an approximate time-depth model for the entire core, based on radiocarbon dates from the top 31m, the Bishop Ash (759,000 yrs) at 304 m, ten within-Brunhes paleomagnetic excursions, and a compaction-corrected mass-accumulation rate of 51.4 g/cm/l000yr (Bischoff et al., 1997a). Application of this model to observed sediment parameters indicates that Owens Lake was saline, alkaline, and biologically productive at times of decreased water-flow, and was generally hydrologically flushed and relatively unproductive during times of increased water-flow. Grain size, abundance of CaCO 3 , organic carbon, clay mineralogy, cation-exchange capacity of the clay fraction, fossil pollen, fish, ostracodes, and diatoms (see summary by Smith et al., 1997) all show cyclic variation down the core. CaCO 3 abundance, in particular, strongly reflects an approximately 100 ka dominant cycle, characteristic of global ice-volume indicated by the MIS δ 18 O record. Four of the last five marine isotope terminations are clearly shown in the OL-92 record.

California↗
USGS1975

Hydrology of the Albemarle-Pamlico region, North Carolina : A preliminary report on the impact of agricultural developments

Extensive agricultural land clearing and drainage operations underway in a 650 square mile part of the Albemarle-Pamlico region--a 1,634 square mile peninsula in North Carolina lying between Albemarle Sound on the North and the Pamlico River on the south--are changing the hydrology of the area. The artificial drainage system being constructed in the region, although it will probably result in only a slight modification of the natural annual evapotranspiration, overland runoff, and ground-water discharge, will likely result in several important problems. First, changes in the water quality of the sounds and estuaries resulting from the rapid runoff of storm waters may prove harmful to the fishery resources. Second, lowering of the water table may cause relatively rapid subsidence of the land surface in an irregular pattern in the extensive areas underlain by thick peat deposits as a result of biochemical oxidation, peat fires, and wind.

North Carolina↗
USGS2003

Influence of climate on deep-water clastic sedimentation: application of a modern model, Peru-Chile Trough, to an ancient system, Ouachita Trough

Traditionally, an abrupt and massive influx of siliciclastic sediments into an area of deposition has been attributed to tectonic uplift without consideration of the influence of climate or climatic change on rates of weathering, erosion, transportation, and deposition. With few exceptions, fluvial sediment transport is minimal in both extremely arid climates and in perhumid (everwet) climates. Maximum sediment transport occurs in climates characterized by strongly seasonal rainfall, where the effect of vegetation on erosion is minimal. The Peru–Chile trench and Andes Mountain system (P–CT/AMS) of the eastern Pacific Ocean clearly illustrates the effects of climate on rates of weathering, erosion, transport, and deep-sea sedimentation. Terrigenous sediment is virtually absent in the arid belt north of lat. 30° S in the P–CT, but in the belt of seasonal rainfall south of lat. 30° S terrigenous sediment is abundant. Spatial variations in the amount and seasonality of annual precipitation are now generally accepted as the cause for this difference. The spatial variation in sediment supply to the P–CT appears to be an excellent modern analogue for the temporal variation in sediment supply to certain ancient systems, such as the Ouachita Trough in the southern United States. By comparison, during the Ordovician through the early Mississippian, sediment was deposited at very slow rates as the Ouachita Trough moved northward through the southern hemisphere dry belt (lat. 10° S to lat. 30° S). The deposystem approached the tropical humid zone during the Mississippian, coincident with increased coarse clastic sedimentation. By the Middle Pennsylvanian (Atokan), the provenance area and the deposystem moved well into the tropical humid zone, and as much as 8,500 m of mineralogically mature (but texturally immature) quartz sand was introduced and deposited. This increase in clastic sediment deposition traditionally has been attributed solely to tectonic activity. However, we contend that the principal control on the introduction of abundant terrigenous sediment was the movement of the deposystem from an arid or semiarid climate into a seasonally wetter climatic regime. The physical and mineralogical maturity of the quartz sand is the result of tropical weathering in provenance areas.

Climate Controls on Stratigraphy: SEPM Special Pub↗
USGS2002

Organochlorine compounds and trace elements in fish tissue and streambed sediment in the Mobile River Basin, Alabama, Mississippi, and Georgia, 1998

During the summer of 1998, as part of the National Water-Quality Assessment Program, a survey was conducted to determine which organochlorine compounds and trace elements occur in fish tissues and streambed sediments in the Mobile River Basin, which includes parts of Alabama, Mississippi, Georgia, and Tennessee. The data collected were compared to guidelines related to wildlife, land use, and to 1991 and 1994 National Water-Quality Assessment Program Study-Unit data.Twenty-one sites were sampled in subbasins of the Mobile River Basin. The subbasins ranged in size from about 9 to 22,000 square miles and were dominated by either a single land use or a combination of land uses. The major land-use categories were urban, agriculture, and forest.Organochlorine compounds were widespread spatially in the Mobile River Basin. At least one organochlorine compound was reported at the majority of sampling sites (84 percent) and in a majority of whole-fish (80 percent) and streambed-sediment (52 percent) samples. Multiple organochlorine compounds were reported at 75 percent of the sites where fish tissues were collected and were reported at many of the streambed-sediment sampling sites (45 percent). The majority of concentrations reported, however, were less than 5 micrograms per kilogram in fish-tissue samples and less than 1 microgram per kilogram in streambed-sediment samples.The majority of trace elements analyzed in fish-liver tissue (86 percent) and streambed-sediment (98 percent) samples were reported during this study. Multiple trace elements were reported in all samples and at all sites.Based on comparisons of concentrations of organochlorine compounds and trace elements in fish-tissue and streambed-sediment samples in relation to National Academy of Science and National Academy of Engineering and Canadian tissue guidelines, probable-effects concentrations, and mean probable-effects concentration quotients for streambed sediment, the potential exists for adverse effects to wildlife at 15 (72 percent) of the sites sampled. The potential for adverse effects at these sites is because of the presence of residues or breakdown products related to polychlorinated biphenyls (PCB?s), chlordane, dichlorodiphenyltrichloroethane (DDT), chromium, lead, and zinc.The majority of compounds reported (65 percent) were chlordane, DDT, and PCB?s, or their breakdown products. Concentrations of chlordane and heptachlor epoxide in whole-fish tissue were positively correlated to the amount of urban land use in a basin. Total DDT concentrations in whole-fish tissues were positively correlated to agriculture.The relation of trace elements to land use is not as clear as the relation of organochlorine compounds to land use. This lack of clarity may be due to the possibility of geologic sources of trace elements in the Mobile River Basin and to the ubiquitous nature of many of these trace elements. However, there may be a correlation between the amount of urban land use and concentrations of antimony, cadmium, lead, and zinc in streambed-sediment samples from the Mobile River Basin.Fewer organochlorine compounds and trace elements were reported in samples from the Mobile River Basin than in samples collected during the 1991 and 1994 National Water-Quality Assessment Program studies. Of the organochlorine compounds analyzed nationally, 57 percent were reported in whole-fish tissue samples collected locally and 41 percent were reported in streambed-sediment samples collected locally, whereas 96 percent and 86 percent, respectively, were reported nationally. Of trace elements analyzed nationally, 86 percent were reported in fish-liver tissue locally and 95 percent were reported in streambed-sediment samples locally, whereas 95 percent and 98 percent, respectively, were reported nationally.In general, concentrations of organochlorine compounds and trace elements and the frequency with which they were reported in the Mobile River Basin are similar to or less than t

Alabama, Georgia, Mississippi, Tennessee↗
USGS2024

Modeling the mid-Piacenzian warm climate using the water isotope-enabled Community Earth System Model (iCESM1.2-ITPCAS)

The mid-Piacenzian Warm Period (MPWP, ~ 3.264–3.025 Ma) is the most recent example of a persistently warmer climate in equilibrium with atmospheric CO 2 concentrations similar to today. Towards studying patterns and dynamics of a warming climate the MPWP is often compared to today. Following the Pliocene Model Intercomparison Project, Phase 2 (PlioMIP2) protocol we prepare a water isotope-enabled Community Earth System Model (iCESM1.2) simulation that is warmer and wetter than the PlioMIP2 multi-model ensemble (MME). While our simulation resembles PlioMIP2 MME in many aspects we find added insights. (1) Considerable warmth at high latitudes exceeds previous simulations. Polar amplification (PA) is comparable to proxies, enabled by iCESM1.2’s high climate sensitivity and a distinct method of ocean initialization. (2) Major driver of warmth is the downward component of clear-sky surface long-wave radiation (Δ T rlds_clearsky ). (3) In iCESM1.2 modulated dominance of dynamic (δDY) processes causes different low-latitude (~ 30 S°–10°N) precipitation response than the PlioMIP2 MME, where thermodynamic processes (δTH) dominate. (4) Modulated local condensation leads to lower δ18O p across tropical Indian Ocean and surrounding Asian-African-Australian monsoon regions. (5) We find contrasting changes in tropical atmospheric circulations (Hadley and Walker cells). Anomalous regional meridional (zonal) circulation, forced by changes in tropical-subtropical (tropical) diabatic processes, presents a more comprehensive perspective than explaining weakened and expanded Hadley circulation (strengthened and westward-shifted Walker circulation) via static stability. (6) Enhanced Atlantic meridional overturning circulation owes to a closed Bering Strait.

Climate Dynamics↗
USGS2006

Fasting augments PCB impact on liver metabolism in anadromous Arctic Char

Anadromous arctic char (Salvelinus alpinus) undertake short feeding migrations to seawater every summer and accumulate lipids, while the rest of the year is spent in fresh water where the accumulated lipid reserves are mobilized. We tested the hypothesis that winter fasting and the associated polychlorinated biphenyls' (PCBs) redistribution from lipid depots to critical tissues impair the liver metabolic capacity in these animals. Char were administered Aroclor 1254 (0, 1, 10, and 100 mg/ kg body mass) orally and maintained for 4 months without feeding to mimic seasonal winter fasting, while fed groups (0 and 100 mg Aroclor 1254/kg) were maintained for comparison. A clear dose-related increase in PCB accumulation and cytochrome P4501A (CYP1A) protein content was observed in the livers of fasted fish. This PCB concentration and CYP1A response with the high dose of Aroclor were 1.5-fold and 3-fold greater in the fasted than in the fed fish, respectively. In fed fish, PCB exposure lowered liver glycogen content, whereas none of the other metabolic indicators were significantly affected. In fasted fish, PCB exposure depressed liver glycogen content and activities of glucose-6-phosphate dehydrogenase, alanine aminotransferase, lactate dehydrogenase, and phosphoenolpyruvate carboxykinase and elevated 3-hydroxyacylcoA dehydrogenase activity and glucocorticoid receptor protein expression. There were no significant impacts of PCB on heat shock protein 70 (hsp70) and hsp90 contents in either fed or fasted fish. Collectively, our study demonstrates that winter emaciation associated with the anadromous lifestyle predisposes arctic char to PCB impact on hepatic metabolism including disruption of the adaptive metabolic responses to extended fasting. ?? 2006 Oxford University Press.

Toxicological Sciences↗
USGS2009

A calibrated, high-resolution goes satellite solar insolation product for a climatology of Florida evapotranspiration

Estimates of incoming solar radiation (insolation) from Geostationary Operational Environmental Satellite observations have been produced for the state of Florida over a 10-year period (1995-2004). These insolation estimates were developed into well-calibrated half-hourly and daily integrated solar insolation fields over the state at 2 km resolution, in addition to a 2-week running minimum surface albedo product. Model results of the daily integrated insolation were compared with ground-based pyranometers, and as a result, the entire dataset was calibrated. This calibration was accomplished through a three-step process: (1) comparison with ground-based pyranometer measurements on clear (noncloudy) reference days, (2) correcting for a bias related to cloudiness, and (3) deriving a monthly bias correction factor. Precalibration results indicated good model performance, with a station-averaged model error of 2.2 MJ m -2 /day (13%). Calibration reduced errors to 1.7 MJ m -2 /day (10%), and also removed temporal-related, seasonal-related, and satellite sensor-related biases. The calibrated insolation dataset will subsequently be used by state of Florida Water Management Districts to produce statewide, 2-km resolution maps of estimated daily reference and potential evapotranspiration for water management-related activities. ?? 2009 American Water Resources Association.

Journal of the American Water Resources Associatio↗
USGS2024

Phosphates in some Missouri refractory clays

This paper describes in detail phosphate minerals occurring in refractory clays of Missouri and their effect on the refractory degree of the clays. The minerals identified include carbonate-fluorapatite (francolite), crandallite, goyazite, wavellite, variscite and strengite. It is emphasized that these phosphates occur only in local isolated concentrations, and not generally in Missouri refractory clays. The Missouri fireclay region comprises 2 districts, northern and southern, separated by the Missouri River. In this region, clay constitutes a major part of the Lower Pennsylvanian Cheltenham Formation. The original Cheltenham mud was an argillic residue derived from leaching and dissolution of pre-Pennsylvanian carbonates. The mud accumulated on a karstic erosion surface truncating the pre-Cheltenham rocks. Fireclays of the northern district consist mainly of poorly ordered kaolinite, with variable but minor amounts of illite, chlorite and fine-grained detrital quartz. Clays of the southern district were subjected to extreme leaching that produced well-ordered kaolinite flint clays. Local desilication formed pockets of diaspore, or more commonly, kaolinite, with oolite-like nubs or burls of diaspore (“burley”" clay). The phosphate-bearing materials have been studied by X-ray diffraction (XRD), scanning electron microscopy-energy dispersive spectral analysis (SEM-EDS) and chemical analysis. Calcian goyazite was identified in a sample of diaspore, and francolite in a sample of flint clay. A veinlet of wavellite occurs in flint clay at one locality, and a veinlet of variscite-strengite at another locality. The Missouri flint-clay-hosted francolite could not have formed in the same manner as marine francolite. The evidence suggests that the Cheltenham francolite precipitated from ion complexes in pore water, nearly simultaneously with crystallization of kaolinite flint clay from an alumina-silica gel. Calcian goyazite is an early diagenetic addition to its diaspore host. The wavellite and variscite-strengite veinlets are secondary, precipitated from ion complexes in ground water percolating along cracks in the flint clay. The flint clay host of the variscite-strengite veinlet contains strontian crandallite. All of the phosphates contain significant amounts of strontium. The source of P, Ca and Sr was the marine carbonates. Dissolution of these carbonates produced the argillic residue that became the primordial Cheltenham paludal mud, which ultimately altered to fireclay. Preliminary firing tests show that the presence of phosphates lowers fusion temperature. However, it is not clear whether poor refractoriness is due to the presence of phosphates, per se, or to Ca, Sr and other alkaline elements present in the phosphates.

Clays and Clay Minerals↗
USGS2019

Climatic variation drives growth potential of juvenile Chinook Salmon (Oncorhynchus tshawytscha) along a sub-Arctic boreal riverscape

Climatic variation is a key driver of freshwater physical processes that in turn control stream fish growth and population dynamics at fine spatial scales and species distributions across broad landscapes. A recent downturn in Chinook Salmon returns across the Yukon River basin, Alaska, USA, and Yukon Territories, Canada, has led to hardship among user groups and increased interest in understanding how freshwater processes affect population persistence within this important commercial, recreational, and subsistence fishery. Here we present results for the Chena River basin, interior Alaska, where we used field observations and riverscape-scale spatially-explicit models to assess the influence of stream temperature on juvenile Chinook Salmon growth potential among years (2003 2015) and across 438 stream-km. We ran bioenergetic simulations for warm and cool year scenarios and contrasted temperature model precision and growth among different habitat types (small and large tributaries, main stem, side channels) based on field estimates of growth, size, and diet, and measured stream temperatures. Stream temperature regimes predicted from remotely-sensed land surface temperature were precise during the open water season (R2 > 0.87; RMSE < 1.1 C) although the relationship was weakest in groundwater-mediated tributary habitats. Field observations revealed salmon were 67% larger by mass (g) in September during a warm year versus a cool year from main stem sites. Bioenergetic simulations predicted that, on average, growth potential was 42% higher in warm years, although growth potential varied across the riverscape as much as 60% between cool upstream and warm downstream habitats. Climate variability is clearly an important driver of freshwater habitat conditions and has a large role in controlling freshwater growth of juvenile salmon. A better understanding of how climate influences growth conditions in different habitat types and across broad landscapes will be critical for conservation and management of Alaskan Chinook Salmon stocks under an expected warmer and more variable climate.

Alaska, Yukon↗
USGS2009

Distribution and Joint Fish-Tag Survival of Juvenile Chinook Salmon Migrating through the Sacramento-San Joaquin River Delta, California, 2008

Acoustic telemetry was used to obtain the movement histories of 915 juvenile fall-run Chinook salmon (Oncorhynchus tshawytscha) through the lower San Joaquin River and Sacramento-San Joaquin Delta, California, in 2008. Data were analyzed within a release-recapture framework to estimate survival, route distribution, and detection probabilities among three migration pathways through the Delta. The pathways included the primary route through the San Joaquin River and two less direct routes (Old River and Turner Cut). Strong inferences about survival were limited by premature tag failure, but estimates of fish distribution among migration routes should be unaffected by tag failure. Based on tag failure tests (N = 66 tags), we estimated that only 55-78 percent of the tags used in this study were still functioning when the last fish was detected exiting the study area 15 days after release. Due to premature tag failure, our 'survival' estimates represent the joint probability that both the tag and fish survived, not just survival of fish. Low estimates of fish-tag survival could have been caused by fish mortality or fish travel times that exceeded the life of the tag, but we were unable to differentiate between the two. Fish-tag survival through the Delta (from Durham Ferry to Chipps Island by all routes) ranged from 0.05 +or- 0.01 (SE) to 0.06 +or- 0.01 between the two weekly release groups. Among the three migration routes, fish that remained in the San Joaquin River exhibited the highest joint fish-tag survival (0.09 +or- 0.02) in both weeks, but only 22-33 percent of tagged fish used this route, depending on the week of release. Only 4-10 percent (depending on week) of tagged fish traveled through Turner Cut, but no tagged fish that used this route were detected exiting the Delta. Most fish (63-68 percent, depending on week of release) migrated through Old River, but fish-tag survival through this route (0.05 +or- 0.01) was only about one-half that of fish that remained in the San Joaquin River. Once tagged fish entered Old River, only fish collected at two large water conveyance projects and transported through the Delta by truck were detected exiting the Delta, suggesting that this route was the only successful migration pathway for fish that entered Old River. The rate of entrainment of tagged juvenile salmon into Old River was similar to the fraction of San Joaquin River discharge flowing into Old River, which averaged 63 percent but varied tidally and ranged from 33 to 100 percent daily. Although improvements in transmitter battery life are clearly needed, this information will help guide the development of future research and monitoring efforts in this system.

Open-File Report↗
USGS1998

Occurrence and distribution of dissolved pesticides in the San Joaquin River basin, California

The effects of pesticide application, hydrology, and chemical and physical properties on the occurrence of pesticides in surface water in the San Joaquin River Basin, California, were examined. The study of pesticide occurrence in the highly agricultural San Joaquin?Tulare Basins is part of the National Water-Quality Assessment Program of the U.S. Geological Survey. One hundred forty-three water samples were collected throughout 1993 from sites on the San Joaquin River and three of its tributaries: Orestimba Creek, Salt Slough, and the Merced River. Of the 83 pesticides selected for analysis in this study, 49 different compounds were detected in samples from the four sites and ranged in concentration from less than the detection limit to 20 micrograms per liter. All but one sample contained at least one pesticide, and more than 50 percent of the samples contained seven or more pesticides. Six compounds were detected in more than 50 percent of the samples: four herbicides (dacthal, EPTC, metolachlor, and simazine) and two insecticides (chlorpyrifos and diazinon). None of the measured concentrations exceeded U.S. Environmental Protection Agency drinking water criteria, and many of the measured concentrations were very low. The concentrations of seven pesticides exceeded criteria for the protection of freshwater aquatic life: azinphos-methyl, carbaryl, chlorpyrifos, diazinon, diuron, malathion, and trifluralin. Overall, some criteria for protection of aquatic life were exceeded in a total of 97 samples. Factors affecting the spatial patterns of occurrence of the pesticides in the different subbasins included the pattern of application and hydrology. Seventy percent of pesticides with known application were detected. Overall, 40 different pesticides were detected in Orestimba Creek, 33 in Salt Slough, and 26 in the Merced River. Samples from the Merced River had a relatively low number of detections, despite the high number (35) of pesticides applied, owing to the generally low percentage of irrigation return flow and contribution of pesticide-free streamflow from reservoir releases. Irrigation return flows in the Orestimba Creek and Salt Slough subbasins generally contained more pesticides at higher concentrations. In addition, the distribution of seven pesticides (alachlor, cyanazine, dacthal, fonofos, molinate, napropamide, and trifluralin) in the subbasins showed a direct spatial correspondence between occurrence and application rates. Temporal patterns of occurrence also were affected by patterns of application and hydrology. Most pesticides showed a clear correspondence between the times of their application and their occurrence. Fourteen pesticides had maximum application and concentrations during the summer irrigation season. However, several pesticides exhibited maximum concentrations during winter storms, although maximum application occurred at some other time of year?the result of differences in precipitation and streamflow between seasons. In some subbasins, precipitation runoff was more effective than irrigation return flows at transporting pesticides from the site of application to the stream. Also, during autumn, when there was neither precipitation nor irrigation, the transport of pesticides to streams was limited. The effect of chemical and physical properties on the occurrence of pesticides was examined for the San Joaquin River Basin as a whole. The runoff potential of each pesticide, calculated from the solubility, water-soil organic carbon partition coefficient Koc, and hydrolysis half-life, is generally consistent with the frequency of detection of pesticides in surface water in relation to the amount applied. These three properties each were generally, and weakly, correlated with the relative load of the pesticides in surface water. Pesticide occurrence and concentrations at the mouth of the basin (the San Joaquin River near Vernalis) was compared with pesticide occurrence and concentration in the three

Water-Resources Investigations Report↗
USGS2021

Genomic and environmental influences on resilience in a cold-water fish near the edge of its range

Small, isolated populations present a challenge for conservation. The dueling effects of selection and drift in a limited pool of genetic diversity make the responses of small populations to environmental perturbations erratic and difficult to predict. This is particularly true at the edge of a species range, where populations often persist at the limits of their environmental tolerances. Populations of cisco, Coregonus artedi , in inland lakes have experienced numerous extirpations along the southern edge of their range in recent decades, which are thought to result from environmental degradation and loss of cold, well-oxygenated habitat as lakes warm. Yet, cisco extirpations do not show a clear latitudinal pattern, suggesting that local environmental factors and potentially local adaptation may influence resilience. Here, we used genomic tools to investigate the nature of this pattern of resilience. We used restriction site-associated DNA capture (Rapture) sequencing to survey genomic diversity and differentiation in southern inland lake cisco populations and compared the frequency of deleterious mutations that potentially influence fitness across lakes. We also examined haplotype diversity in a region of the major histocompatibility complex involved in stress and immune system response. We correlated these metrics to spatial and environmental factors including latitude, lake size, and measures of oxythermal habitat and found significant relationships between genetic metrics and broad and local factors. High levels of genetic differentiation among populations were punctuated by a phylogeographic break and residual patterns of isolation-by-distance. Although the prevalence of deleterious mutations and inbreeding coefficients was significantly correlated with latitude, neutral and non-neutral genetic diversity were most strongly correlated with lake surface area. Notably, differences among lakes in the availability of estimated oxythermal habitat left no clear population genomic signature. Our results shed light on the complex dynamics influencing these isolated populations and provide valuable information for their conservation.

Wisconsin↗
USGS2000

Entrainment of riparian gravel and cobbles in an alluvial reach of a regulated canyon river

Many canyon rivers have channels and riparian zones composed of alluvial materials and these reaches, dominated by fluvial processes, are sensitive to alterations in streamflow regime. Prior to reservoir construction in the mid-1960s, banks and bars in alluvial reaches of the Gunnison River in the Black Canyon National Monument, Colorado, USA, periodically were reworked and cleared of riparian vegetation by mainstem floods. Recent interest in maintaining near-natural conditions in the Black Canyon using reservoir releases has created a need to estimate sediment-entraining discharges for a variety of geomorphic surfaces composed of sediment ranging in size from gravel to small boulders. Sediment entrainment potential was studied at eight cross-sections in an alluvial reach of the Gunnison River in the Black Canyon in 1994 and 1995. A one-dimensional water-surface profile model was used to estimate water-surface elevations, flow depths, and hydraulic conditions on selected alluvial surfaces for discharges ranging from 57 to 570 m 3 /s. Onsite observations before and after a flood of 270 m 3 /s confirmed sediment entrainment on several surfaces inundated by the flood. Selective entrainment of all but the largest particle sizes on the surface occurred at some locations. Physical evidence of sediment entrainment, or absence of sediment entrainment, on inundated surfaces generally was consistent with critical shear stresses estimated with a dimensionless critical shear stress of 0.030. Sediment-entrainment potential over a range of discharges was summarized by the ratio of the local boundary shear stress to the critical shear stress for d 50 , given hydraulic geometry and sediment-size characteristics. Differing entrainment potential for similar geomorphic surfaces indicates that estimation of minimum streamflow requirements based on sediment mobility is site-specific and that there is no unique streamflow that will initiate movement of d 50 at every geomorphically similar location in the Black Canyon.

Colorado↗