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USGS2015

The Gulf Coast Vulnerability Assessment: Mangrove, Tidal Emergent Marsh, Barrier Islands, and Oyster Reef

Climate, sea level rise, and urbanization are undergoing unprecedented levels of combined change and are expected to have large effects on natural resources—particularly along the Gulf of Mexico coastline (Gulf Coast). Management decisions to address these effects (i.e., adaptation) require an understanding of the relative vulnerability of various resources to these stressors. To meet this need, the four Landscape Conservation Cooperatives along the Gulf partnered with the Gulf of Mexico Alliance to conduct this Gulf Coast Vulnerability Assessment (GCVA). Vulnerability in this context incorporates the aspects of exposure and sensitivity to threats, coupled with the adaptive capacity to mitigate those threats. Potential impact and adaptive capacity reflect natural history features of target species and ecosystems. The GCVA used an expert opinion approach to qualitatively assess the vulnerability of four ecosystems: mangrove, oyster reef, tidal emergent marsh, and barrier islands, and a suite of wildlife species that depend on them. More than 50 individuals participated in the completion of the GCVA, facilitated via Ecosystem and Species Expert Teams. Of the species assessed, Kemp’s ridley sea turtle was identified as the most vulnerable species across the Gulf Coast. Experts identified the main threats as loss of nesting habitat to sea level rise, erosion, and urbanization. Kemp’s ridley also had an overall low adaptive capacity score due to their low genetic diversity, and higher nest site fidelity as compared to other assessed species. Tidal emergent marsh was the most vulnerable ecosystem, due in part to sea level rise and erosion. In general, avian species were more vulnerable than fish because of nesting habitat loss to sea level rise, erosion, and potential increases in storm surge. Assessors commonly indicated a lack of information regarding impacts due to projected changes in the disturbance regime, biotic interactions, and synergistic effects in both the species and habitat assessments. Many of the assessors who focused on species also identified data gaps regarding genetic information, phenotypic plasticity, life history, and species responses to past climate change and sea level rise. Regardless of information gaps, the results from the GCVA can be used to inform Gulf-wide adaptation plans. Given the scale of climatic impacts, coordinated efforts to address Gulf-wide threats to species and ecosystems will enhance the effectiveness of management actions and also have the potential to maximize the efficacy of limited funding.

Report↗

USGS2020

Development of a genotyping protocol for Mojave desert tortoise scat

Noninvasive fecal genotyping can be a useful tool for population monitoring of elusive species. We tested extraction protocols on scat samples from the threatened Mojave Desert tortoise, Gopherus agassizii, to evaluate whether scat-based mark–recapture and population genetic monitoring studies are feasible.We extracted DNA from G. agassizii scat samples collected in California and Nevada using several extraction protocols and evaluated the reliability of resulting genotypes using quality scores, maximum likelihood reliability estimates, and paired scat and blood genotypes from the same individuals. Finally, we assessed probabilities of identity and sibship, and locus amplification quality, and calculated genotyping error rates for 19 microsatellite loci to determine the best set of loci to use with G. agassizii scat extractions. We found that genotype quality depended more on the sample quality than on the extraction method, and that the Qiagen DNeasy Plant Mini extraction kit is an efficient method for extracting tortoise DNA from tortoise scat. We identified 6 G. agassizii microsatellite loci that can be used to generate a unique molecular tag for individual tortoises. We characterized the reliability of an additional 13 microsatellite loci for use in population genetic analyses where additional power at the expense of some increase in error may be advantageous. As proof of concept, with very low error rates, we matched 3 opportunistically collected scat samples to blood genotypes from animals captured during population surveys within the study area and discovered at least 3 new individuals, even after 2 yrs of extensive survey work. These results suggest that genotyping of field-collected scat can complement existing methods used in long-term demographic and movement studies of G. agassizii and other, closely related, tortoise species.

California↗

USGS2026

Riverscape heterogeneity shapes population diversity for a migratory fish

Habitat patch dynamics can scale up to influence population demography and diversity with implications for resilience to environmental stochasticity. But how the spatial arrangement and size of habitat patches interact with other components of habitat heterogeneity to shape population diversity at larger spatial scales is not well understood. For riverine fishes, there is increasing evidence that tributary streams provide critical demographic support to main stem rivers. However, the extent to which main stem rivers rely on demographic contributions from tributaries, and the factors underlying this dependence, have not been assessed. Here, we used genetic stock identification to evaluate the effect of tributaries on population diversity of Yellowstone cutthroat trout ( Oncorhynchus virginalis bouvieri ) occupying the main stem Snake River, Wyoming, USA. We found that the main stem relied almost entirely on tributaries for demographic support, but main stem composition varied spatially among river sections. Distance between habitat patches, catchment area, and groundwater availability acted in concert to determine the contribution of specific tributaries to the main stem, but contributions were ultimately modulated by habitat connectivity. We also found evidence for multi-scale spatial structure in tributary contributions, providing insight into untested drivers of main stem river population diversity. Our results demonstrate how spatially discrete and distributed riverscape attributes influence population diversity at broader spatial scales, illustrating how ecosystem resilience emerges from the dynamic, two-way exchange of individuals and energy across habitat networks. Management plans for large rivers that address the ecological contributions of tributaries may be needed to achieve optimal outcomes. Similarly, conservation strategies that exclusively focus on headwater streams may fail to capture the broader habitat requirements necessary to maintain robust cold-water fish populations and associated recreational fisheries, particularly under global environmental change.

Wyoming↗

USGS2013

Localized extinction of an arboreal desert lizard caused by habitat fragmentation

We adopted a species’ perspective for predicting extinction risk in a small, endemic, and strictly scansorial lizard ( Urosaurus nigricaudus ), in an old (∼60 year) and highly fragmented (8% habitat remaining) agricultural landscape from the Sonoran Desert, Mexico. We genotyped 10 microsatellite loci in 280 individuals from 11 populations in fragmented and continuous habitat. Individual dispersal was restricted to less than 400 m, according to analyses of spatial autocorrelation and spatially explicit Bayesian assignment methods. Within this scale, continuous areas and narrow washes with native vegetation allowed high levels of gene flow over tens of kilometers. In the absence of the native vegetation, cleared areas and highways were identified as partial barriers. In contrast, outside the scale of dispersal, cleared areas behaved as complete barriers, and surveys corroborated the species went extinct after a few decades in all small (less than 45 ha), isolated habitat fragments. No evidence for significant loss of genetic diversity was found, but results suggested fragmentation increased the spatial scale of movements, relatedness, genetic structure, and potentially affected sex-biased dispersal. A plausible threshold of individual dispersal predicted only 23% of all fragments in the landscape were linked with migration from continuous habitat, while complete barriers isolated the majority of fragments. Our study suggested limited dispersal, coupled with an inability to use a homogeneous and hostile matrix without vegetation and shade, could result in frequent time-delayed extinctions of small ectotherms in highly fragmented desert landscapes, particularly considering an increase in the risk of overheating and a decrease in dispersal potential induced by global warming.

Sonoran Desert↗

USGS2017

Using science to inform management and improve biological conservation in the Desert Renewable Energy Conservation Plan

The Mojave and Colorado deserts of southern California have been viewed as vast wilderness since early exploration and, until recently, were considered the most untrammeled among western landscapes in the contiguous lower 48 states (United States Department of Agriculture 1893; Leu et al. 2008). However, the factors that define desert wilderness—small human population, temperature differentials that create unrelenting winds, low rainfall, and cloudless skies—are attractive for renewable energy development. The demand for clean, renewable energy is a national and regional priority and has increased demand for large-scale solar and wind farms in the deserts, particularly in California. The need to balance these national and state energy priorities with existing natural resource and land conservation policies has emerged as a landscape-scale land-use planning initiative known as the Desert Renewable Energy Conservation Plan (DRECP). One of the primary goals for the DRECP was to establish Development Focus Areas (DFAs) where high-quality renewable energy potential of up to 20 gigawatts (GW) could be implemented by the year 2040. DFAs were designed to provide expedited project approvals in locations where environmental impacts could be managed and mitigated, and proximity to transmission corridors provides for the efficient dissemination of energy to users. The DRECP also aims to identify protections for natural resources, recreation, and cultural resources. This plan identifies 37 covered species that receive special consideration in the DRECP. Among the special considerations are climate adaptation requirements, such as the ability to maintain population connectivity through wildlife corridors, while protecting several special recreation areas and 32,000 known cultural sites that are dispersed throughout the region. We evaluated several particular aspects of the DRECP design and process. In particular, we examined land designations in relation to published studies on Mohave ground squirrel (Xerospermophilus mohavensis) habitat and genetic diversity patterns of a suite of broadly distributed desert animal species. The squirrel and its habitat are of particular interest because the entire range of the squirrel is encompassed by the DRECP. We describe the framework of the DRECP, provide a case study of how the DRECP accommodates the needs of the Mohave ground squirrel and its habitat, illustrate DFAs in relation to the genetic diversity of a broad range of terrestrial biota, and conclude with some observations on how land-use issues were resolved across the landscape under various scenarios.

Conference Paper↗

USGS2018

A test of sex specific genetic markers in the Hawaiian hoary bat and relevance to population studies

We tested the utility of a protocol using genetic markers that previously proved successful to identify the sex of Vespertilionid bats on tissues collected from live bats and carcasses of varying age from the Hawaiian hoary bat (Lasiurus cinereus semotus). This molecular method is based on genes unique to X and Y chromosomes in mammals and previously was used successfully on North American hoary bats (L. c. cinereus). We amplified two markers within intron regions of the zinc-finger-X (Zfx) and zinc-finger-Y (Zfy) genes using a multiplexed polymerase chain reaction technique and obtained product bands that were easily visualized using gel electrophoresis. Genotyping determined the sex of 36 individual Hawaiian hoary bat carcasses previously assigned sex only by external genitalia and identified sex for 29 “unknown” bat carcasses that could not be classified by external genitalia. Employing this method for sexing Hawaiian hoary bats will permit more reliable evaluation of the ratio of males to females in subpopulations affected by fatalities from emerging threats. This is critical to the conservation and management of this endangered bat.

Technical Report↗

USGS2016

Interdrainage morphological and genetic differentiation in the Escambia Map Turtle, Graptemys ernsti

Graptemys ernsti, the Escambia Map Turtle, inhabits the Escambia/Conecuh River, the adjacent Yellow River, and the Pea River further to the east, all of which have been distinct drainage systems since the Pleistocene. We used continuous and meristic morphological and genetic data to compare populations of G. ernsti and found evidence of differences among the three drainages. Frequency of occurrence of a nasal trident differed among the three drainages. Yellow River specimens possessed unique mitochondrial haplotypes while the Conecuh and the Pea shared haplotypes. Five microsatellite loci identified the drainages as being distinct, with the strongest differentiation between the Yellow River and the other two drainages. While these differences do not appear great enough to warrant taxonomic recognition, they do suggest that each population has a distinct evolutionary and demographic history and that they should therefore be managed separately.

Herpetological Conservation and Biology↗

USGS2012

Evidence of local adaptation in westslope cutthroat trout

An understanding of the process of local adaptation would allow managers to better protect and conserve species. Many salmonids are in need of such efforts, and because they often persist in differing, isolated environments, they are useful organisms for studying local adaptation. In addition, the temperature sensitivity of salmonids provides a likely target for natural selection. We studied thermal adaptation in four wild populations and one hatchery stock of westslope cutthroat trout Oncorhynchus clarkii lewisi . The mean summer temperatures of source streams ranged from 6.7°C to 11.2°C. Embryos were collected from the wild, and embryonic development, embryonic survival, and juvenile growth were determined. A significant relationship between median embryonic survival and source stream temperature was detected. Based on a rank test, populations from colder streams had a greater decline in median embryonic survival at warm temperatures than populations from warmer streams. Embryonic development and juvenile growth did not appear to be influenced by source. These findings suggest that populations are thermally adapted to their source streams and this should be considered by managers. However, further study is necessary to sort out the potential confounding factors, whether genetic or epigenetic.

Transactions of the American Fisheries Society↗

USGS1997

Status and management of the PaliIa, an endangered Hawaiian honeycreeper, 1987-1996

A single, relictual population of Palila Loxioides bailleui, a Hawaiian honeycreeper, survives on the slopes of Mauna Kea volcano on the island of Hawai'i, where it feeds principally on flowers and green seeds of the mamane tree Sophora chrysophylla. The Palila was listed as an endangered species by state and federal governments because of continuing damage to its habitat by browsing Feral and Mouflon Sheep Ovis aries and O. musimon and Goats Capra hircus and because of the bird's restricted range and low numbers. Ecology of the Palila was studied from 1987 to 1996. Annual population estimates fluctuated between 1 600 and 5 700 and averaged 3 400 birds. Estimates varied with availability of mamane seeds, which are less abundant in drought years. In drought years, most birds did not attempt to breed, and survival rates were lower because of a shortage of food. Availability of mamane seeds also showed large seasonal variability. While some nests were preyed upon by Owls Asio flammeus, Cats Felis catus and Rats Rattus rattus, losses were high at the end of the season from unexplained death of eggs and chicks. Genetic studies did not implicate inbreeding depression. Neither avian malaria nor avian pox appeared at this site, where the mosquito vector was absent. However, weather and food shortage worsened towards the end of the nesting season. Availability of food and habitat remain the principal factors limiting increase in the Palila population. Recovery efforts now focus on reducing numbers of feral ungulates, fire management, removing mammalian predators, and developing techniques for captive propagation and introduction to currently unoccupied sites within the bird's former range. Reforestation adjacent to the Mauna Kea Forest Reserve would allow the Palila population to expand and grow.

Pacific Conservation Biology↗

USGS2011

Foraging segregation and genetic divergence between geographically proximate colonies of a highly mobile seabird

Foraging segregation may play an important role in the maintenance of animal diversity, and is a proposed mechanism for promoting genetic divergence within seabird species. However, little information exists regarding its presence among seabird populations. We investigated genetic and foraging divergence between two colonies of endangered Hawaiian petrels ( Pterodroma sandwichensis ) nesting on the islands of Hawaii and Kauai using the mitochondrial Cytochrome b gene and carbon, nitrogen and hydrogen isotope values (δ 13 C, δ 15 N and δD, respectively) of feathers. Genetic analyses revealed strong differentiation between colonies on Hawaii and Kauai, with Φ ST = 0.50 ( p < 0.0001). Coalescent-based analyses gave estimates of <1 migration event per 1,000 generations. Hatch-year birds from Kauai had significantly lower δ 13 C and δ 15 N values than those from Hawaii. This is consistent with Kauai birds provisioning chicks with prey derived from near or north of the Hawaiian Islands, and Hawaii birds provisioning young with prey from regions of the equatorial Pacific characterized by elevated δ 15 N values at the food web base. δ 15 N values of Kauai and Hawaii adults differed significantly, indicating additional foraging segregation during molt. Feather δD varied from −69 to 53‰. This variation cannot be related solely to an isotopically homogeneous ocean water source or evaporative water loss. Instead, we propose the involvement of salt gland excretion. Our data demonstrate the presence of foraging segregation between proximately nesting seabird populations, despite high species mobility. This ecological diversity may facilitate population coexistence, and its preservation should be a focus of conservation strategies.

Hawaii↗

USGS2017

Emerging fungal pathogen Ophidiomyces ophiodiicola in wild European snakes

Snake fungal disease (SFD) is an emerging disease of conservation concern in eastern North America. Ophidiomyces ophiodiicola , the causative agent of SFD, has been isolated from over 30 species of wild snakes from six families in North America. Whilst O. ophiodiicola has been isolated from captive snakes outside North America, the pathogen has not been reported from wild snakes elsewhere. We screened 33 carcasses and 303 moulted skins from wild snakes collected from 2010–2016 in Great Britain and the Czech Republic for the presence of macroscopic skin lesions and O. ophiodiicola . The fungus was detected using real-time PCR in 26 (8.6%) specimens across the period of collection. Follow up culture and histopathologic analyses confirmed that both O. ophiodiicola and SFD occur in wild European snakes. Although skin lesions were mild in most cases, in some snakes they were severe and were considered likely to have contributed to mortality. Culture characterisations demonstrated that European isolates grew more slowly than those from the United States, and phylogenetic analyses indicated that isolates from European wild snakes reside in a clade distinct from the North American isolates examined. These genetic and phenotypic differences indicate that the European isolates represent novel strains of O. ophiodiicola . Further work is required to understand the individual and population level impact of this pathogen in Europe.

Scientific Reports↗

USGS2023

Comparing reintroduction strategies for the endangered San Francisco gartersnake (Thamnophis sirtalis tetrataenia) using demographic models

For endangered species persisting in a few populations, reintroductions to unoccupied habitat are a popular conservation action to increase viability in the long term. Identifying the reintroduction strategy that is most likely to result in viable founder and donor populations is essential to optimally use resources available for conservation. The San Francisco gartersnake ( Thamnophis sirtalis tetrataenia ) is an endangered sub-species that persists in a small number of populations in a highly urbanized region of California. Most of the extant populations of San Francisco gartersnakes have low adult abundance and effective population size, heightening the need for establishment of more populations for insurance against the risk of extinction. We used simulations from demographic models to project the probability of quasi-extinction for reintroduced populations of San Francisco gartersnakes based on the release of neonate, juvenile, adult, or mixed-age propagules. Our simulation results indicated that the release of head-started juveniles resulted in the greatest viability of reintroduced populations, and that releases would need to continue for at least 15 years to ensure a low probability of quasi-extinction. Releasing captive-bred juvenile snakes would also have less effect on the viability of the donor population, compared to strategies that require more adult snakes to be removed from the donor population for translocation. Our models focus on snake demography, but the genetic makeup of donor, captive, and reintroduced populations will also be a major concern for any proposed reintroduction plan. This study demonstrates how modeling can be used to inform reintroduction strategies for highly imperiled species.

PLoS ONE↗

USGS2022

Using landscape genomics to delineate future adaptive potential for climate change in the Yosemite toad (Anaxyrus canorus)

An essential goal in conservation biology is delineating population units that maximize the probability of species persisting into the future and adapting to future environmental change. However, future-facing conservation concerns are often addressed using retrospective patterns that could be irrelevant. We recommend a novel landscape genomics framework for delineating future “Geminate Evolutionary Units” (GEUs) in a focal species: (1) identify loci under environmental selection, (2) model and map adaptive conservation units that may spawn future lineages, (3) forecast relative selection pressures on each future lineage, and (4) estimate their fitness and likelihood of persistence using geo-genomic simulations. Using this process, we delineated conservation units for the Yosemite toad ( Anaxyrus canorus ), a U.S. federally threatened species that is highly vulnerable to climate change. We used a genome-wide dataset, redundancy analysis, and Bayesian association methods to identify 24 candidate loci responding to climatic selection ( R 2 ranging from 0.09 to 0.52), after controlling for demographic structure. Candidate loci included genes such as MAP3K5, involved in cellular response to environmental change. We then forecasted future genomic response to climate change using the multivariate machine learning algorithm Gradient Forests. Based on all available evidence, we found three GEUs in Yosemite National Park, reflecting contrasting adaptive optima: YF-North (high winter snowpack with moderate summer rainfall), YF-East (low to moderate snowpack with high summer rainfall), and YF-Low-Elevation (low snowpack and rainfall). Simulations under the RCP 8.5 climate change scenario suggest that the species will decline by 29% over 90 years, but the highly diverse YF-East lineage will be least impacted for two reasons: (1) geographically it will be sheltered from the largest climatic selection pressures, and (2) its standing genetic diversity will promote a faster adaptive response. Our approach provides a comprehensive strategy for protecting imperiled non-model species with genomic data alone and has wide applicability to other declining species.

California↗

USGS2004

Less waste corn, more land in soybeans, and the switch to genetically modified crops: Trends with important implications for wildlife management

American agriculture has provided abundant high-energy foods for migratory and resident wildlife populations since the onset of modern wildlife management. Responding to anecdotal evidence that corn residues are declining in cropland, we remeasured waste corn post-harvest in the Central Platte River Valley (CPRV) of Nebraska during 1997 and 1998 to compare with 1978. Post-harvest waste corn averaged 2.6% and 1.8% of yield in 1997 and 1998, respectively. After accounting for a 20% increase in yield, waste corn in 1997 and 1998 was reduced 24% and 47% from 1978. We also evaluated use of soybeans by spring-staging sandhill cranes ( Crus canadensis ) and waterfowl during spring 1998 and 1999. Despite being widely available in the CPRV, soybeans did not occur in esophageal contents of sandhill cranes ( n= 174), northern pintails ( Anas acuta , n= 139), greater white-fronted geese ( Anser albifrons , n= 198), or lesser snow geese ( Chen caerulescens , n= 208) collected with food in their esophagi. Lack of soybean consumption by cranes and waterfowl in Nebraska in early spring builds upon previously published findings, suggesting that soybeans are poorly suited for meeting nutrient needs of wildlife requiring a high-energy diet. Given evidence that high-energy food and numerous populations of seed-eating species found on farmland are declining, and the enormous potential risk to game and nongame wildlife populations if high-energy foods were to become scarce, a comprehensive research effort to study the problem appears warranted. Provisions under the Conservation Security subtitle of The Farm Security and Rural Investment Act of 2002 offer a potential mechanism to encourage producers to manage cropland in ways that would replace part of the high-energy foods that have been lost to increasing efficiency of production agriculture.

Nebraska↗

USGS2018

Intraspecific niche models for ponderosa pine (Pinus ponderosa) suggest potential variability in population-level response to climate change

Unique responses to climate change can occur across intraspecific levels, resulting in individualistic adaptation or movement patterns among populations within a given species. Thus, the need to model potential responses among genetically distinct populations within a species is increasingly recognized. However, predictive models of future distributions are regularly fit at the species level, often because intraspecific variation is unknown or is identified only within limited sample locations. In this study, we considered the role of intraspecific variation to shape the geographic distribution of ponderosa pine ( Pinus ponderosa ), an ecologically and economically important tree species in North America. Morphological and genetic variation across the distribution of ponderosa pine suggest the need to model intraspecific populations: the two varieties (var. ponderosa and var. scopulorum ) and several haplotype groups within each variety have been shown to occupy unique climatic niches, suggesting populations have distinct evolutionary lineages adapted to different environmental conditions. We utilized a recently-available, geographically-widespread dataset of intraspecific variation (haplotypes) for ponderosa pine and a recently-devised lineage distance modeling approach to derive additional, likely intraspecific occurrence locations. We confirmed the relative uniqueness of each haplotype-climate relationship using a niche-overlap analysis, and developed ecological niche models (ENMs) to project the distribution for two varieties and eight haplotypes under future climate forecasts. Future projections of haplotype niche distributions generally revealed greater potential range loss than predicted for the varieties. This difference may reflect intraspecific responses of distinct evolutionary lineages. However, directional trends are generally consistent across intraspecific levels, and include a loss of distributional area and an upward shift in elevation. Our results demonstrate the utility in modeling intraspecific response to changing climate and they inform management and conservation strategies, by identifying haplotypes and geographic areas that may be most at risk, or most secure, under projected climate change.

Systematic Biology↗

USGS1999

Hybridization and the phylogenetic relationship between polecats and domestic ferrets in Britain

Ferrets ( Mustela furo ) were domesticated from polecats ( M. putorius, M. eversmannii ) over 2000 years ago. Following their introduction to Britain, they escaped and hybridized with native European polecats ( M. putorius ). Native polecats declined to the point of near extinction prior to World War I, but have recently begun to expand from a Welsh refugium. Concern has arisen as to the extent of polecat/ferret introgression, and in particular, whether the expanding population is of mainly hybrid origin. Therefore, mitochondrial DNA sequencing was used to investigate polecat genetic diversity in Britain. Two geographically distinct lineages were found, where one may be ancestral to the British polecat, and the other to the domestic ferret. The ancestral distribution of each lineage, or assortative mating is sufficient to explain the observed pattern. A further comparison between the distribution of the polecat phenotype and mitochondrial haplotype implies that the current population expansion may be mediated by dispersing male polecats hybridizing with female feral ferrets. However, the wild source of the ferret remains obscure. Relatively recent speciation from European mink ( M. lutreola ) and black-footed ferrets ( M. nigripes ), and/or the effects of hybridization result in an unresolved molecular phylogeny.

Biological Conservation↗

USGS2004

Migration stopover ecology of western avian populations: A southwestern migration workshop

The importance of migration stopover sites in ensuring that migratory birds successfully accomplish their journeys between breeding and non-breeding ranges has come to the forefront of avian research. Migratory birds that breed in western United States (US) and Canada and overwinter primarily in western Mexico migrate across the arid region of northern Mexico and southwestern US. Many of these migrants use lowland riparian stopover habitats, which comprise less than 0.1% of the western U.S. landscape. These habitats represent a significant conservation priority. Recognizing the importance of migration stopover habitats in the arid southwest, the U.S. Fish and Wildlife Service (USFWS) Region 6 partnered with the U.S. Geological Survey (USGS) to support a project---“Migration stopover ecology of western avian populations: patterns of geographic and habitat distribution.” A primary objective of the project was to convene a workshop for avian researchers, conservation professionals, and land managers involved in stopover needs of migratory birds that breed in western North America. The workshop included presentations on our current state of knowledge regarding passerine migration in western North America, techniques and technologies potentially useful in researching migration, and efforts that agencies and other partners are conducting within the realm of migration. Workshop presentations provided a backdrop for subsequent discussions, the goals of which were to identify research needs and initiate a coordinated approach to research of western migration stopover ecology. Workshop presentations spanned a wide range of concerns and interests. Highlights included indications that mid- and high-elevation riparian and montane shrubland habitats may be as crucial to western migrants in fall migration as lowland riparian habitats are in spring migration. Comparisons of eastern versus western migration systems elucidated large differences in stopover habitats used and the intensity with which certain types are used, underscoring the potential need to develop separate management approaches for eastern and western stopover sites. Presentations on techniques and technology for migration research revealed that rate of lipid deposition can serve as an indicator of habitat quality; that genetics and stable isotope analyses of feathers can be valuable tools to elucidate linkages between breeding and wintering areas; that radar imagery can be used to track large-scale movement patterns and habitat use; and that there are analytical options for combining multiple sources of information. Other presentations focused on partnership perspectives (USFWS and Sonoran Joint Venture), the genesis of a western migration monitoring network, premises of Coordinated Bird Monitoring, and how collaborative efforts could benefit migration research (e.g., combined bird and bat migration studies; linking avian researchers with fluvial geomorphologists; linking research throughout western North America; linking surveys and banding). Priority research needs and questions identified during the open discussions fell into three main categories: (1) habitat/landscape/climate relationships, (2) en route bird distribution patterns, and (3) general migration ecology. Tasks within these categories included: define the relative importance of various habitat types to migrants in spring and fall, determine what distinguishes high- from poor-quality stopover habitat; determine geographic patterns of loss in stopover habitats; model landscape attributes associated with species richness and abundance; identify effects of climate change and current climate anomalies on plant phonologies, associated insect flushes, and timing of migration; and determine effects of hydrologic changes on riparian vegetation, food availability, and stopover habitat quality. Workshop participants discussed a coordinated approach for addressing immediate research needs regarding migration patterns and crucial stopover sites and types. They envisioned a three-tiered, coordinated approach: (1) long-term research to address effects of climate change and other large-scale patterns, (2) intensive, short-term survey and monitoring efforts using a stratified random design within habitats of interest to elucidate regional patterns of distribution and habitat use, and (3) research conducted at existing survey and banding sites to address more in-depth questions (e.g., rates of lipid deposition, microhabitat use, isotope analyses). There was considerable interest in developing common research proposals to blend the broad expertise represented at this workshop. A second meeting is recommended to build on the momentum of these discussions, to facilitate collaborations, and further the goals of integrated approaches to broadscale research on migration stopover ecology.

Open-File Report↗

USGS2002

History of pronghorn population monitoring, research, and management in Yellowstone National Park

Pronghorn antelope in Yellowstone National Park (YNP) persist in a small population that historically has experienced recurrent, sometimes dramatic declines. They apparently are isolated from other pronghorns, depend partly on private lands for winter range, experience heavy predation of fawns, and concentrate during winter in a relatively small area, thereby increasing their vulnerability to factors like disease or locally extreme weather. Overall, the situation raises serious concerns about the long-term viability of this population. Although such concerns are not new, evidence of a dramatic population decline since 1991 and continued poor recruitment has created a renewed sense of urgency. Recent efforts to revitalize pronghorn research in YNP began with fawn recruitment and habitat use studies, initiated in 1999 and 2000. With those studies drawing to a close, YNP is reviewing the status and direction of its pronghorn program. The Yellowstone Pronghorn Conservation Assessment Workshop was convened in YNP in January, 2002, to appraise the current state of knowledge about this pronghorn population and make recommendations about future management and research needs. A review of pronghorn population change, management, and research in YNP was commissioned in May, 2001, to provide historical background for workshop participants. Following is a written summary of that review. The process of locating materials for this review was limited to 3 months. Not all relevant materials were discovered or reviewed in that time. In particular, it was not possible to find and review all original sources of information. Also, except for occasional anecdotal accounts, weather records were not reviewed, leaving a potentially serious gap in our understanding of the forces driving changes in pronghorn population counts and estimates 2 over time. Despite these deficiencies, considerable information was reviewed, earlier summaries of population classification and count data were updated, and previously uncited sources of information were identified that challenge important aspects of previous interpretations of the history of pronghorns and pronghorn management in YNP. Information is grouped into 4 major subject areas: distribution and habitat use, demographics and management, genetics, and disease.

Wyoming↗