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At least 721 records · Page 40Linked to original sources
USGS2021

Recent recovery and expansion of Guam’s locally endangered Såli (Micronesian Starling) Aplonis opaca population in the presence of the invasive brown treesnake

Assessing the impacts of invasive predators on the demography and distribution of native species is critical for understanding mechanisms of species persistence and informing the design of recovery programmes. On the oceanic island of Guam, the introduction of the predatory brown treesnake Boiga irregularis after World War II caused the near-total loss of the native forest avifauna. Localised snake control measures have been implemented since the early 1990s, yet it remains poorly understood how they have impacted Guam’s remaining native bird populations. To address this question, we combined intensive area searches of Andersen Air Force Base (AAFB) with island-wide transect surveys and opportunistic sightings to provide a comprehensive update on the distribution and abundance of Såli (Micronesian Starling, Aplonis opaca ) – one of Guam’s last extant native bird species. Area searches of AAFB, where the largest remnant of the Såli population persists, revealed a 15-fold population increase since the last survey in the early 1990s, and transect surveys and opportunistic sightings indicate incipient recolonisation of other urbanised areas of northern and central Guam. We estimate the current island-wide population size at ~1,400 individuals. The population increase can likely be attributed to a combination of snake control measures and the Såli’s ability to exploit urban refugia for nesting and roosting. Although these trends demonstrate some population recovery, a skewed age ratio (>90% adults and subadults) at AAFB and a highly urbanised distribution and low abundance outside AAFB indicate that snake predation continues to strongly impact the population. More intensive snake suppression efforts, particularly in forested areas, may allow for the Såli population to attain its former distribution and abundance on Guam. More broadly, our findings reinforce the importance of urban areas as refugia for some threatened species.

Bird Conservation International↗
USGS1986

Contrasting magma types and steady-state, volume-predictable, basaltic volcanism along the Great Rift, Idaho

The Great Rift is an 85-km-long, 2- to 8-km-wide volcanic rift zone in the Snake River Plain, Idaho. Three latest Pleistocene to Holocene basaltic lava fields, Craters of the Moon, Kings Bowl, and Wapi, are located along the Great Rift. The Craters of the Moon lava field is a composite of more than 60 lava flows, 25 cinder cones, and at least 8 eruptive fissure systems. It covers 1,600 km 2 and contains ∼30 km 3 of lava flows and associated pyroclastic deposits. Field, radiocarbon, and paleomagnetic data show that the Craters of the Moon lava field formed in eight eruptive periods, each of which was typically several hundred years or less in duration and was separated from others before and after by intervals of several hundred to several thousand years. The first eruptive period began ∼15,000 yr B.P., and the latest eruptive period ended ∼2100 yr B.P. The small Kings Bowl lava field (3.3 km 2 , 0.01 km 3 ) and the larger Wapi lava field (330 km 2 , 6 km 3 ) both formed ∼2250 yr B.P. Three magma types have fed flows along the Great Rift. The types are (1) a contaminated type that has a SiO 2 range of ∼49%–64% and commonly shows petrographic evidence of contamination, (2) a fractionated type that has a SiO 2 range of ∼44%–54% and shows no evidence of contamination and whose chemical and mineralogical variation can be accounted for mainly by crystal fractionation, and (3) a Snake River Plain type that has a SiO 2 range of ∼45%–48%, shows little evidence of fractionation, and is represented by Kings Bowl–Wapi flows and olivine basalts of the Snake River Plain. The contaminated and fractionated magma types were erupted at the Craters of the Moon lava field, and the Snake River Plain magma type was erupted at the Kings Bowl and Wapi lava fields. These relations imply that the magma reservoirs are spatially isolated. The magma output rate for the Craters of the Moon segment of the Great Rift was constant at ∼1.5 km 3 /1,000 yr for the period from 15,000 to 7000 yr B.P. The rate increased to ∼2.8 km 3 /1,000 yr from 7000 to 2000 yr B.P., mainly as a result of the addition of contaminated magma to the nearly constant output rate of fractionated magma. The Craters of the Moon segment of the Great Rift has experienced quasi-steady-state, volume-predictable volcanism for the last 15,000 yr. The recurrence interval of eruptive activity for the Craters of the Moon lava field ranges from several hundred to ∼3,000 yr. Because the present interval has lasted ∼2,100 yr, another eruptive period seems likely to occur within the next 1,000 yr. The steady-state, volume-predictable relationship suggests that 5–6 km 3 of lava will be erupted in the next eruptive period.

Idaho↗
USGS2023

Development and application of a qPCR-based genotyping assay for Ophidiomyces ophidiicola to investigate the epidemiology of ophidiomycosis

Ophidiomycosis (snake fungal disease) is an infectious disease caused by the fungus Ophidiomyces ophidiicola to which all snake species appear to be susceptible. Significant variation has been observed in clinical presentation, progression of disease, and response to treatment, which may be due to genetic variation in the causative agent. Recent phylogenetic analysis based on whole-genome sequencing identified that O . ophidiicola strains from the United States formed a clade distinct from European strains, and that multiple clonal lineages of the clade are present in the United States. The purpose of this study was to design a qPCR-based genotyping assay for O . ophidiicola , then apply that assay to swab-extracted DNA samples to investigate whether the multiple O . ophidiicola clades and clonal lineages in the United States have specific geographic, taxonomic, or temporal predilections. To this end, six full genome sequences of O . ophidiicola representing different clades and clonal lineages were aligned to identify genomic areas shared between subsets of the isolates. Eleven hydrolysis-based Taqman primer-probe sets were designed to amplify selected gene segments and produce unique amplification patterns for each isolate, each with a limit of detection of 10 or fewer copies of the target sequence and an amplification efficiency of 90–110%. The qPCR-based approach was validated using samples from strains known to belong to specific clades and applied to swab-extracted O . ophidiicola DNA samples from multiple snake species, states, and years. When compared to full-genome sequencing, the qPCR-based genotyping assay assigned 75% of samples to the same major clade (Cohen’s kappa = 0.360, 95% Confidence Interval = 0.154–0.567) with 67–77% sensitivity and 88–100% specificity, depending on clade/clonal lineage. Swab-extracted O . ophidiicola DNA samples from across the United States were assigned to six different clonal lineages, including four of the six established lineages and two newly defined groups, which likely represent recombinant strains of O . ophidiicola . Using multinomial logistic regression modeling to predict clade based on snake taxonomic group, state of origin, and year of collection, state was the most significant predictor of clonal lineage. Furthermore, clonal lineage was not associated with disease severity in the most intensely sampled species, the Lake Erie watersnake ( Nerodia sipedon insularum ). Overall, this assay represents a rapid, cost-effective genotyping method for O . ophidiicola that can be used to better understand the epidemiology of ophidiomycosis.

PLoS ONE↗
USGS2014

Movements and activity of juvenile Brown Treesnakes ( Boiga irregularis )

Understanding the spatial ecology and foraging strategy of invasive animals is essential for success in control or eradication. We studied movements and activity in juvenile Brown Treesnakes on Guam, as this population segment has proven particularly difficult to control. Distance between daytime refugia (from telemetry of 18 juveniles, 423-800 mm snout-vent length) ranged from 0-118 m ( n = 86), with a grand mean of 43 m. There were tendencies for shorter snake movements on nights directly following a full moon and on dry nights, but variation among snakes was of a larger magnitude and would greatly reduce chances to detect moon or rain effects unless corrected for. Snake activity was estimated from audio recordings of signals from “tipping” radio transmitters, analyzed for pulse period and amplitude. Activity was highest in the hours immediately after sunset, and gradually declined throughout the night before dropping abruptly in conjunction with sunrise. Snake activity was higher on rainy nights, and tended to be highest during waning moons and when the moon was below the horizon. We conclude that small Brown Treesnakes forage actively and appear to move far enough to regularly encounter the traps and bait used on Guam for control purposes, suggesting that alternative explanations are required for their low capture rates with these control tools.

Copeia↗
USGS2014

Invasive Brown Treesnake movements at road edges indicate road-crossing avoidance

Roads have significant impacts on the dispersal of wildlife. Although this poses a threat to the abundance and diversity of desirable flora and fauna, it also affords some opportunity for enhancing control of invasive species. Roads are the most common terrain features that may affect the rate of landscape-scale movements of invasive Brown Treesnakes (Boiga irregularis) throughout Guam. We radio tracked 45 free-ranging Brown Treesnakes in close proximity to two roads in Guam and recorded instances where daily relocations of snakes spanned roads. Then we reconstructed observed movement histories with randomized turning angles, which served as a useful null hypothesis for assessing the effect of roads or road edge habitat on Brown Treesnake movement patterns. Random walk simulations demonstrated that Brown Treesnakes crossed these roads at a rate far lower than would be expected if snake movement was random with respect to roads and road edge habitat. We discuss two alternative hypotheses for these results: 1) habitat gaps posed by roads physically or behaviorally restrict snake movement; or 2) road edges provide preferred foraging habitat from which snakes are reluctant to depart. Because roads often form the boundaries of jurisdictional and management units, the effects of roads on the movement of invasive Brown Treesnakes will influence the prospects for success of future landscape-level suppression efforts.

Journal of Herpetology↗
USGS1981

Hydrologic conditions at the Idaho National Engineering Laboratory, Idaho, emphasis: 1974-1978

The Idaho National Engineering Laboratory (INEL) site covers about 890 square miles of the eastern Snake River Plain and overlies the Snake River Plain aquifer. Low concentrations of aqueous chemical and radio-active wastes have been discharged to shallow ponds and to shallow or deep wells on the site since 1952. The regional water table ranges from about 200 feet to more than 1,000 feet below land surface within the INEL boundaries. The gradient of the water table averages about 4 feet per mile to the south-southwest. During the latest period of record, 1974 through 1978, the position of the water table has shown a net decline that ranges from 0.2 foot near the northern boundary of the INEL to more than 10 feet in the central and southern parts of the site. Recharge from surface water has been minimal or non-existent during the latter part of this period. A large body of perched ground water has formed in the basalt underlying the waste disposal ponds in the Test Reactor Area. This perched zone contains tritium, chromium-51, cobalt-60, strontium-90, and several nonradioactive ions. Tritium is the only mappable waste constituent in that portion of the Snake River Plain aquifer directly underlying this perched zone. Low concentrations of chemical and low-level radioactive wastes enter directly into the Snake River Plain aquifer through the Idaho Chemical Processing Plant (ICPP) disposal well. From 1974 through 1978, this 600-foot well was used to discharge a total of 1,861 million gallons of waste water which contained 1,697 curies of radioactivity, ninety-five percent of which was tritium. Tritium has been discharged to the well since 1953 and has formed the largest waste plume, about 28 square miles in area, in the regional aquifer, and minute concentrations have migrated downgradient a horizontal distance of 7.5 miles. Other waste plumes south of the ICPP contain sodium, chloride, nitrate, and the resultant specific conductance. These plumes have similar configurations, flow southward, and the contaminants are in general laterally dispersed in that portion of the aquifer underlying the INEL. Other waste plumes, containing strontium-90 and iodine-129, cover small areas near their points of discharge because strontium-90 is sorbed from solution as it moves through the aquifer and iodine-129 is discharged in very low quantities. Cesium-137 is also discharged through the well but it is strongly sorbed from solution and has never been detected in a sample of ground water at the INEL. Radionuclide plume size and concentrations therein are controlled by aquifer flow conditions, the quantity discharged, radioactive decay, sorption, dilution by dispersion, and perhaps other chemical reactions. Distributions of non-radoactive chemical wastes are subject to the same processes except for radioactive decay.

Idaho↗
USGS2005

Baseline water-quality characteristics of the Alaska Army National Guard Stewart River Training Area near Nome, Alaska

The Alaska Army National Guard Stewart River Training Area is approximately 23 miles north of Nome on the Seward Peninsula in northwest Alaska. The Stewart River Training Area encompasses much of the Stewart River Basin and a small part of the Snake River Basin. Hydrologic, water-quality, and physical-habitat data were collected at seven surface-water sites within the Stewart River Training Area during the summer runoff months (late-May to early-September) in 2004. Two of the sampling sites selected for this study were on the main stem Stewart River, one at the upstream boundary and one at the downstream boundary of the training area. Continuous hydrologic, precipitation, and water temperature data were collected at these two sites throughout the summer of 2004. Three pond sites, along the upper, middle, and lower reaches of the Stewart River within the training area, were each sampled twice during the summer of 2004 for analysis of water-quality constituents. Two tributaries to the Snake River Basin, Goldbottom Creek and North Fork Snake River, within the Stewart River Training Area boundary, also were sampled twice during the summer of 2004. Water-quality data collected from the Stewart River at the upstream and downstream study sites indicate similar constituent concentrations. Concentrations of most water-quality constituents collected during the summer of 2004 did not exceed standards for drinking water or recreational contact. Analysis of trace-element concentrations in bed sediment samples indicate the threshold effect concentration (below which no adverse effects on organisms is expected) was exceeded for arsenic, chromium, and nickel concentrations at all sample sites within the Stewart River Training Area and cadmium, copper, zinc, and lead concentrations were found to exceed the threshold effect concentration in varying degrees at the sample sites. The probable effect concentration (above which toxic effects on organisms is likely) was exceeded by arsenic concentrations at all sites except the lower pond site. Chromium and nickel concentrations exceeded the probable effect concentration at the upstream Stewart River site and at the North Fork Snake River site.

Scientific Investigations Report↗
USGS2025

Hydrogeologic framework of the Mountain Home area, southern Idaho

In the arid western Snake River Plain around the City of Mountain Home, Idaho, declining groundwater levels concern agricultural, municipal, and other water users who rely on groundwater for sustenance because surface-water resources are limited. The U.S. Geological Survey developed this hydrogeologic framework to provide an updated characterization of groundwater resources in the western Snake River Plain around the City of Mountain Home. The hydrogeologic framework comprises: (1) a conceptual description of hydrogeologic units, (2) a three-dimensional hydrogeologic model and borehole database, (3) a map of groundwater levels and change, and (4) a discussion of groundwater occurrence and movement within the study area. Hydrogeologic units were defined based on existing literature and the borehole database compiled for this study; the five hydrogeologic units are granite, rhyolite, basalt, fine-grained sediments, and coarse-grained sediments. Each unit can bear water, but the main regional aquifer in the study area occurs in the basalt and fine-grained sediment units with depth to water ranging from 150 to 765 feet. A perched groundwater zone near the City of Mountain Home is primarily hosted in basalt and used domestically with most depths to water ranging from 30 to 100 feet. Interflow zones, scoria, and vertical fractures create heterogeneity within the basalt hydrogeologic unit that exerts strong control on groundwater movement, creating horizontal perching conditions and zones of enhanced vertical conductivity that facilitate downward groundwater percolation. In the fine- and coarse-grained sediments and rhyolite units, inferred faults both impede and enhance groundwater movement. The borehole database was constructed by digitizing 540 well-driller reports and was used to build a three-dimensional hydrogeologic framework model which reasonably represents the spatial distribution of hydrogeologic units in the study area. Generally, fine-grained sediments underlie much of the study area, with basalt concentrated in the central and western study area and rhyolite and granite in the uplands to the north. Groundwater levels were measured in 180 wells in March and November 2023; these data were used to develop water-table contour maps and describe groundwater-level change over an irrigation season. Groundwater generally flows south-southwest to the Snake River and groundwater levels declined across most of the study area (from 0.03 to 22.01 feet) between spring and autumn 2023, which is consistent with long-term declines in the Cinder Cone Butte Critical Groundwater Area and Mountain Home Groundwater Management Area. Groundwater levels rose (0.6 to 15.44 feet) over the irrigation season in most wells in the perched groundwater zone near the City of Mountain Home and near the Snake River, indicating the importance of surface-water recharge to groundwater in areas where surface water irrigation occurs. In aggregate, this hydrogeologic framework provides an updated characterization of and new insights into groundwater resources in the study area to help inform water resources management.

Idaho↗
USGS2026

Groundwater budget for the Mountain Home area, southern Idaho, 2022–23

The U.S. Geological Survey, with funding from the Idaho Department of Water Resources, developed a groundwater budget for the Mountain Home area in southern Idaho for irrigation year 2023 (November 1, 2022–October 31, 2023). This study focused on the water balance across the Cinder Cone Butte Critical Groundwater Area (CGWA), Mountain Home Groundwater Management Area (GWMA), and the rest of the study area (RoSA), compiling data from various sources, including precipitation records, groundwater level measurements, metered groundwater pumpage data, surface water diversions and evapotranspiration (ET) estimates derived from remote sensing satellite imagery, and ground-based reference data. Key inflow components included recharge from applied surface water irrigation (which incorporates incidental recharge from irrigation practices and conveyance losses), estimated tributary streamflow, and estimated mountain block recharge. The key outflow components were groundwater pumpage for irrigation, municipal, industrial, and domestic uses, and ET. Recharge from applied irrigation and mountain block recharge were the largest inflows, and groundwater pumpage for irrigation was the largest outflow. The CGWA had a positive groundwater budget residual of 2,170 acre-feet (acre-ft), which contrasts with observed long-term groundwater level declines and historical trends of storage depletion. This positive residual is likely associated with unquantified outflows, including lateral groundwater flow out of the subregion, or other complexities, such as overestimated tributary contributions relative to the actual recharge for the 2023 water budget. The GWMA exhibited a positive residual of 56,563 acre-ft, primarily owing to recharge from applied surface water irrigation and areal recharge during a wetter-than-average year, which allowed irrigation entities to deliver more water from in-basin and out-of-basin reservoirs. The RoSA showed a large positive residual of 124,933 acre-ft. The interpretation of these positive residuals must account for significant uncertainties, including estimations of areal recharge, tributary streamflow (particularly losses and diversions), ET, the volume of surface water loss to the Snake River, lateral groundwater flows between subregions and across study area boundaries, and the unquantified groundwater discharge to the Snake River. These uncertainties, in combination with the complex hydrogeologic controls on water movement and limitations of remotely sensed data, directly affect the accuracy of water availability assessments. Future data collection efforts would help reduce these uncertainties and support water resource management decisions in the Mountain Home area. Key efforts could include installing additional streamflow gaging stations (particularly to quantify tributary losses and gains and surface water losses to the Snake River), improving groundwater pumpage metering, and validating remotely sensed ET data with ground-based measurements. Furthermore, to better quantify unrepresented or highly uncertain fluxes, focused investigations on groundwater discharge to the Snake River, lateral groundwater flows between subregions and across study area boundaries, and a more robust determination of the actual influence and volume of mountain block recharge would help refine future water availability assessments for the Mountain Home area.

Idaho↗
USGS1992

Aquifer-test results, direction of ground-water flow, and 1984-90 annual ground-water pumpage for irrigation, lower Big Lost River Valley, Idaho

The study area (see index map of Idaho), part of the Big Lost River drainage basin, is at the northern side of the eastern Snake River Plain. The lower Big Lost River Valley extends from the confluence of Antelope Creek and the Big Lost River to about 4 mi south of Arco and encompasses about 145 mi 2 (see map showing water-level contours). The study area is about 18 mi long and, at its narrowest, 4 mi wide. Arco, Butte City, and Moore, with populations of 1,016, 59, and 190, respectively, in 1990, are the only incorporated towns. The entire study area, except the extreme northwestern part, is in Butte City. The study area boundary is where alluvium and colluvium pinch out and abut against the White Knob Mountains (chiefly undifferentiated sedimentary rock with lesser amounts of volcanic rock) on the west and the Lost River Range (chiefly sedimentary rock) on the east. Gravel and sand in the valley fill compose the main aquifer. The southern boundary is approximately where Big Lost River valley fill intercalates with or abuts against basalt of the Snake River Group. Spring ground-water levels and flow in the Big Lost River depend primarily on temperature and the amount and timing of precipitation within the entire drainage basin. Periods of abundant water supply and water shortages are, therefore, related to the amount of annual precipitation. Surface reservoir capacity in the valley (Mackay Reservoir, about 20 mi northwest of Moore) is only 20 percent of the average annual flow of the Big Lost River (Crosthwaite and others, 1970, p. 3). Stored surface water is generally unavailable for carryover from years of abundant water supply to help relieve drought conditions in subsequent years. Many farmers have drilled irrigation wells to supplement surface-water supplies and to increase irrigated acreage. Average annual flow of the Big Lost River below Mackay Reservoir near Mackay (gaging station 13127000, not shown) in water years 1905, 1913-14, and 1920-90 was about 224,600 acre-ft; average annual flow of the Big Lost River near Arco (gaging station 13132500; see map showing water-level contours) in water years 1947-61, 1967-80, and 1983-90 was about 79,000 acre-ft (Harenberg and others, 1991, p. 254-255). Moore Canal and East Side Ditch divert water from the Big Lost River at the Moore Diversion, 3 mi north of Moore (see map showing water-level contours) and supply water for irrigation near the margins of the valley. When water supply is average or greater, water in the Big Lost River flows through the study area and onto the Snake River Plain, where it evaporates or infiltrates into the Snake River Plain aquifer. When water supply is below average, water in the Big Lost River commonly does not reach Arco; rather, it is diverted for irrigation in the interior of the valley, evaporates, or infiltrates to the valley-fill aquifer. This report describes the results of a study by the U.S. Geological Survey, in cooperation with the Idaho Department of Water Resources, to collect hydrologic data needed to help address water-supply problems in the Big Lost River Valley. Work involved (1) field inventory of 81 wells, including 46 irrigation wells; (2) measurement of water levels in 154 wells in March 1991; (3) estimation of annual ground-water pumpage for irrigation from 1984 through 1990; and (4) analysis of results of an aquifer test conducted southwest of Moore. All data obtained during this study may be inspected at the U.S. Geological Survey, Idaho District office, Boise.

Idaho↗
USGS2017

Ontogenetic and ecological variation in invasion risk of Brown Treesnakes (Boiga irregularis) on Guam

Size structure within populations of invasive species may have consequences for relative risk at all stages of the invasion process, with implications for management interventions such as interdiction, suppression, and eradication. To assess relative distributions of invasive Brown Treesnakes among demographic categories of management interest, we undertook the most comprehensive and controlled sampling in >25 years of research into this ecologically and economically destructive introduced predator. We collected a seasonally-balanced sample of 100 snakes from each of 18 sites, stratified by six habitat types, encompassing the species’ entire extralimital range. Samples indicated significant differences in distributions of female and male snakes among management classes (juvenile, transitional, and mature) by site and habitat. We found substantial heterogeneity in localized population characteristics over relatively small geographic distances, only modest influence of habitat type, higher prevalence of reproductively mature snakes in savanna and urban habitats, and an alarmingly high proportion of snakes that are too small to be effectively targeted by current rodent-baited control tools (mean = 38.2%, range = 19 to 72%). Failure to account for such variability in high risk demographic fractions may hinder successful interventions.

Guam↗
USGS2021

Can we prove that an undetected species is absent? Evaluating whether brown treesnakes are established on the island of Saipan using surveillance and expert opinion

Detection of invasive species and decisions centered around early detection and rapid response (EDRR) are notorious challenges for decision makers. Detection probability is low for cryptic species, resources are limited, and ecological harm (especially for island ecosystems) can result from failure to remove invasive species due to inadequate or delayed surveillance efforts. Due to the proximity to the U.S. territory of Guam and inter-island traffic, the Commonwealth of the Northern Mariana Islands (CNMI) is at high risk of colonization by the invasive and cryptic brown treesnake ( Boiga irregularis ; BTS). There have been numerous reports of snakes and 7 confirmed specimens secured at ports of entry on the island of Saipan in the CNMI over the last four decades, raising the possibility that a population might be established. Establishment of BTS on Saipan is a major concern, as evidenced by the ecological and economic disruption that occurred on Guam. We evaluated the possibility of a small localized population on Saipan using evidence from surveillance efforts in 1999, 2007, 2009, 2016, and 2018, and from results of expert assessment of the credibility of non-confirmed reports of snakes for the period 1982–2013. For active surveillance efforts, we use a Poisson-based model to estimate the 95% probability of at least one snake being detected at a stated density given the level of sampling effort and detection probability. Based on this collective evidence we conclude there is a low probability that Saipan currently has an incipient population of BTS. However, with the continued presence of BTS on Guam, continuing commercial and military transportation in the region, and relief shipments responding to increased storm intensity, Saipan remains highly vulnerable to accidental introductions. Effective surveillance remains a crucial element for detection of any species, but this may be particularly true for a cryptic snake that is difficult to control once established.

Management of Biological Invasions↗
USGS2023

Natives bite back: Depredation and mortality of invasive juvenile Burmese pythons (Python bivittatus) in the Greater Everglades Ecosystem

Burmese pythons (Python bivittatus Kuhl, 1820) are one of the world’s largest snake species, making them a highly successful and biologically damaging invasive predator in the Greater Everglades Ecosystem, Florida, USA. Though we have knowledge of python diet within this system, we understand very little of other interactions with native species. Effects native species have on invasive pythons, especially in the juvenile size class, are of particular interest as the prevalence of mortalities would inform potential population growth and trophic dynamics with native prey species. Native ophiophagous predators in Florida feed on smaller native snake species and it is unknown if they consistently recognize similarly sized juvenile invasive pythons as prey items. Using radiotelemetry, we found at least four native species within Big Cypress National Preserve that were implicated in juvenile python deaths, including three Florida cottonmouths (Agkistrodon conanti Gloyd, 1969), five American alligators (Alligator mississippiensis Daudin, 1802), one hispid cotton rat (Sigmodon hispidus Say and Ord, 1825), and three mesomammals. One mortality was the result of an attempt to subdue a prey item 106% the size of the python, constituting the largest predator:prey size ratio ever reported in this size class. This finding may indicate that phenotypic variation in individual juvenile pythons includes behavior that could be maladaptive within the novel Florida environment. Here we describe some of the first confirmed cases of non-anthropogenic mortality in juvenile Burmese pythons in Florida and present evidence that invasive pythons in this size class are now being incorporated into the diets of native species in its invasive range Burmese pythons (Python bivittatus Kuhl, 1820) are one of the world’s largest snake species, making them a highly successful and biologically damaging invasive predator in the Greater Everglades Ecosystem, Florida, USA. Though we have knowledge of python diet within this system, we understand very little of other interactions with native species. Effects native species have on invasive pythons, especially in the juvenile size class, are of particular interest as the prevalence of mortalities would inform potential population growth and trophic dynamics with native prey species. Native ophiophagous predators in Florida feed on smaller native snake species and it is unknown if they consistently recognize similarly sized juvenile invasive pythons as prey items. Using radiotelemetry, we found at least four native species within Big Cypress National Preserve that were implicated in juvenile python deaths, including three Florida cottonmouths (Agkistrodon conanti Gloyd, 1969), five American alligators (Alligator mississippiensis Daudin, 1802), one hispid cotton rat (Sigmodon hispidus Say and Ord, 1825), and three mesomammals. One mortality was the result of an attempt to subdue a prey item 106% the size of the python, constituting the largest predator:prey size ratio ever reported in this size class. This finding may indicate that phenotypic variation in individual juvenile pythons includes behavior that could be maladaptive within the novel Florida environment. Here we describe some of the first confirmed cases of non-anthropogenic mortality in juvenile Burmese pythons in Florida and present evidence that invasive pythons in this size class are now being incorporated into the diets of native species in its invasive range.

Florida↗
USGS2016

Agkistrodon piscivorus conanti (Florida cottonmouth) Diet

Agkistrodon piscivorus is a generalist predator that feeds on a variety of prey, including snakes (Gloyd and Conant 1990. Snakes of the Agkistrodon Complex: A Monographic Review. Society for the Study of Amphibians and Reptiles, Oxford, Ohio. 614 pp.; Lillywhite et al. 2002. Herpetol. Rev. 33:259–260; Hill and Beaupre 2008. Copeia 2008:105–114). Cemophora coccinea (Scarletsnake) is not known as one of the 26 species of snakes consumed by A. piscivorus (Ernst and Ernst 2011. Venomous Reptiles of the United States, Canada, and Northern Mexico: Volume 1. Johns Hopkins University Press, Baltimore, Maryland. 193 pp.). On 16 June 2015, at 2210 h, we found a dead-on-road A. piscivorus (total length [TL] = 51.0 cm) in Everglades National Park on Main Park Road, 1.88 km S Pa-hay-okee, Miami-Dade Co., Florida, USA (25.414085°N, 80.78183146°W, WGS84; elev. 3 m). The snake had been killed by a vehicle and some internal organs were exposed. Visible stomach contents included a small (TL ca. 15 cm) C. coccinea. Photographic vouchers of the A. piscivorus (UF-Herpetology 177194) and C. coccinea (UF-Herpetology 177195) were deposited in the Division of Herpetology, Florida Museum of Natural History, University of Florida. Despite the fact that these species are sympatric over large areas of the southeastern United States, this is the first known documented predation of C. coccinea by A. piscivorus.

Herpetological Review↗
USGS2007

Investigating passage of ESA-listed juvenile fall Chinook salmon at Lower Granite Dam during winter when the fish bypass system is not operated

During the winter of 2006-07, we radio and passive integrated transponder (PIT) tagged, and released 99 juvenile fall Chinook salmon to evaluate over-wintering behavior and dam passage in the lower Snake River, Washington. All fish were released 10 km upstream of Lower Granite Dam at Granite Point in early November, 2006. Fixed radio telemetry detection sites located in the forebay and tailrace areas of Lower Granite, Little Goose, Lower Monumental, Ice Harbor, Bonneville dams, and at Lyle, Washington were used to monitor fish movements and dam passage through early-May 2007. Of the 99 fish released during our study, 80 passed Lower Granite Dam and were detected at downstream detection sites, 37 passed Little Goose Dam, 41 passed Lower Monumental Dam, 31 passed Ice Harbor Dam, 18 passed Lyle, WA, and 13 passed Bonneville Dam. Of the fish that passed Lower Granite Dam in the fall, 63 fish did so during the extended bypass period from November 1 through December 16. Of these fish, 53 were also detected by the PIT-tag interrogation system. Fifteen of the fish that passed Lower Granite Dam in the fall continued to pass lower Snake River dams and exit the system by the end of January. The remaining fish either died, their tags failed, or they resided in Little Goose Reservoir until spring when relatively few continued their seaward migration. Passage of tagged fish past lower Snake River dams generally declined during the winter as temperatures decreased, but increased again in the spring as temperatures and flows increased. Fish residence times in reservoirs and forebays was lengthy during the winter (up to 160 d), and varied by reservoir and time of year. We observed no diel trends in fish passage. Very few fish were detected at PIT-tag interrogation sites in the spring compared to detection by radio telemetry detection sites indicating that fish may have passed via spill. We believe that passage of overwintering juvenile fall Chinook salmon during winter is due more to chance than directed downstream movement. Since the primary route of passage during the winter is through powerhouse turbines, the potential exists for increased mortality for over-wintering juvenile fall Chinook salmon in the Snake River. Our findings that some fish can pass undetected during the winter likely bias traditional smolt-to-adult return rate calculations that are typically used to measure the success of juvenile transportation studies.

Washington↗
USGS2007

Investigating passage of ESA-listed juvenile fall Chinook salmon at Lower Granite Dam during winter when the fish bypass system is not operated. 2006 Annual Report

During the winter of 2005-06, we radio and PIT tagged and released 48 juvenile fall Chinook salmon to evaluate over-wintering behavior and dam passage in the lower Snake River, Washington. Fish were released at the upstream end of the Lower Granite Dam forebay in November and December 2005. Fixed radio telemetry detection sites located in forebay and tailrace areas of Lower Granite, Little Goose, Lower Monumental and Ice Harbor dams were used to monitor fish movements and dam passage through early-May 2006. Of the 48 fish released during our study, 39 (81 %) passed Lower Granite Dam and were detected at downstream detection sites, 29 (60%) passed Little Goose Dam, 25 (52%) passed Lower Monumental Dam, and 15 (31%) passed Ice Harbor Dam. Thirty-seven (95%), 23 (79%), 16 (64%), and 9 (60%) of the fish that passed Lower Granite, Little Goose, Lower Monumental, and Ice Harbor dams respectively, did so when the fish bypass system was not operated. Passage of tagged fish past lower Snake River dams generally declined during the winter, but increased again after bypass began in April. Fish residence times in reservoirs and forebays was lengthy during the winter (up to 118 d), and varied by reservoir and time of year. We observed no diel passage trends. Only 15 of the 48 fish were subsequently detected at a PIT-tag interrogation site the following spring. We believe that passage of overwintering juvenile fall Chinook salmon during winter is due more to chance than directed downstream movement. Since the primary route of passage during the winter is through powerhouse turbines, the potential exists for increased mortality for over-wintering juvenile fall Chinook salmon in the Snake River. Our findings also have implications for transportation studies of subyearling fall Chinook salmon in the Snake River. Specifically, the finding that some fish can pass undetected during the winter may bias smolt-to-adult return rate calculations that are typically used to measure the success of the aforementioned management actions.

Washington↗
USGS1990

Assessment of smolt condition for travel time analysis. Annual report 1989

The Water Budget is a volume of water used to enhance environmental conditions (flows) in the Columbia and Snake rivers for juvenile salmonids during their seaward migration. To manage the Water Budget, the Fish Passage Center estimates travel times of juvenile salmonids in index reaches of the main-stem rivers, using information on river flows and the migrational characteristics of the juvenile salmonids. This study was initiated to provide physiological information on the juvenile salmonids used for these travel time estimates. The physiological ability to respond to stressors was evaluated by measuring concentrations of plasma cortisol, glucose, and chlorides before and after a 30-s handling-stress challenge test. As in 1988, most groups responded satisfactorily to the challenge. The scope for response was compromised among two groups of juvenile chinook salmon that were trucked to release sites and in steelhead from one hatchery after unusual marking and transportation protocols were used. The development of smoltification was assessed by measuring gill Na+-K+ ATPase activity and plasma thyroxine concentrations. Mean ATPase activities of marked hatchery groups of juvenile chinook salmon and steelhead changed little during the month before release and rose sharply for about the first 20 d of the migration after release. Mean plasma thyroxine was highest during the first 20 d after release. Mean gill ATPase activity of spring chinook salmon from the migration-at-large peaked at about the 90th percentile of passage at Rock Island and Lower Granite dams, and at about the 50th percentile of passage at McNary Dam. Mean gill ATPase activity of wild steelhead was higher than gill ATPase activity of hatchery steelhead at Rock Island Dam, the Snake River Trap, and Lower Granite Dam, but not at McNary Dam. This was attributed to a time-dependent relationship between increases in ATPase activity and the number of days fish migrated before recapture. Correlations of gill ATPase activity and/or plasma thyroxine concentrations with condition factor, morphology, or skin guanine concentration may be useful as non-lethal indicators of smoltification for inclusion in a smoltification index. Prevalence of bacterial kidney disease in spring chinook salmon was generally higher than in 1988, ranging from 81-100% using an enzyme-linked immunosorbent assay (ELISA) method. Fish from Snake River hatcheries had more severe infections than those from mid-Columbia hatcheries. The percentage of fish with severe infections was lower at two downstream dams than at the Snake River hatcheries of origin, suggesting a bias in dam collection facilities or that these fish ceased to migrate, either of which could lead to biases in travel time estimates.

Report↗
USGS2011

Coluber (= Masticophis) flagellum piceus (Red Racer). Arboreal/nocturnal behavior

Many species of snakes display arboreal behavior and are often found in vegetation many meters above ground. Mojave Desert snake species rarely get very far above the ground surface and are perhaps limited by predominantly low growing vegetation. Coluber flagellum piceus is considered strictly diurnal and although may ascend vegetation while active, is thought to retreat to subterranean refugia at night. Werler and Dixon (2000. Texas Snakes: Identification, Distribution, and Natural History. University of Texas Press, Austin. 437 pp.) stated “The western coachwhip is active above ground only during daylight hours. It almost invariably retires to depths of an animal burrow before sundown, where it spends the night.” The normal morning activity period for C. flagellum appears to be from approximately 0700–1000 h from June through September (Jones and Whitford 1989. Southwest. Nat. 34:460–467). Secor and Nagy (1994. Ecology 75:1600–1614), and Secor (1995. Herpetol. Monogr. 9:169–186) determined that the average body temperature for active above ground activity of C. flagellum was (33.1°C + 0.1°C, range of 24.0°C–40.8°C, N = 502), stating that coachwhip snakes were seldom active on the surface with body temperatures below 28°C. Here, I report a C. f. piceus that apparently spent the night draped in a Creosote Bush ( Larrea tridentata ).

Nevada↗