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USGS1977

Borehole geophysical investigations in the south Texas uranium district

Contrasts of electrical properties between uranium deposits and their host rocks in South Texas are subtle. In places where deposits are small or deep, conventional geophysical well-logging techniques and hole-to-hole measurements may be the only practical method to detect changes in rock properties associated with the occurrence of uranium ore deposits. Two separate ore-producing areas in South Texas were chosen for studying borehole geophysical techniques applied to uranium-exploration problems. Extensive measurements of physical properties were made on cores and taken from holes where electrical-resistivity, induced-polarization and gamam-ray logs were run. These analyses show that: (1) induced-polarization anomalies are caused by a change in pyrite content and clay-sized material content and (2) resistivity anomalies are associated with a change in clay-sized material content and cementation. In addition to conventional borehole techniques, hole-to-hole induced-polarization and resistivity tests were made in South Texas. These measurements were made by placing a current source down one hole and a receiver cable down an adjacent hole whose separation ranged from 30 to 300 m and hole depths varied from 80 to 270 m. These tests show that hole-to-hole measurements can be used to detect changes in physical properties, associated with uranium ore, that occur between boreholes. Hole-to-hole measurements provide a link between surface measurements and well logs and can minimize the amount of drilling needed to locate an ore deposit. Accordingly, borehole geophysics will become an increasingly important evaluation tool as mineral exploration goes deeper.

Texas↗

USGS2022

On the use of high-resolution and deep-learning seismic catalogs for short-term earthquake forecasts: Potential benefits and current limitations

Enhanced earthquake catalogs provide detailed images of evolving seismic sequences. Currently, these data sets take some time to be released but will soon become available in real time. Here, we explore whether and how enhanced seismic catalogs feeding into established short-term earthquake forecasting protocols may result in higher predictive skill. We consider three enhanced catalogs for the 2016–2017 Central Italy sequence, featuring a bulk completeness lower by at least two magnitude units compared to the real-time catalog and an improved hypocentral resolution. We use them to inform a set of physical Coulomb Rate-and-State (CRS) and statistical Epidemic-Type Aftershock Sequence (ETAS) models to forecast the space-time occurrence of M3+ events during the first 6 months of the sequence. We track model performance using standard likelihood-based metrics and compare their skill against the best-performing CRS and ETAS models among those developed with the real-time catalog. We find that while the incorporation of the triggering contributions from new small magnitude detections of the enhanced catalogs is beneficial for both types of forecasts, these models do not significantly outperform their respective near real-time benchmarks. To explore the reasons behind this result, we perform targeted sensitivity tests that show how (a) the typical spatial discretizations of forecast experiments ( 2 km) hamper the ability of models to capture highly localized secondary triggering patterns and (b) differences in earthquake parameters (i.e., magnitude and hypocenters) reported in different catalogs can affect forecast evaluation. These findings will contribute toward improving forecast model design and evaluation strategies for next-generation seismic catalogs.

Journal of Geophysical Research--Solid Earth↗

USGS2024

Impacts of artificial rearing on cisco Coregonus artedi morphology, including pugheadedness

Cisco ( Coregonus artedi Lesueur, 1818) in the Laurentian Great Lakes declined throughout the 19th and 20th centuries. Managers are attempting to restore Great Lakes cisco and other coregonines using multiple approaches, including stocking. A potential obstacle to these efforts is that artificially reared coregonines can display deformities and morphological differences compared to wild fish, but the impacts of artificial rearing on cisco morphology are not well understood. We compared morphologies of wild cisco to their artificially reared offspring, including one family that was exposed to three rearing temperature treatments. We found that artificially reared cisco had smaller eyes, shallower bodies, fewer gill rakers, and longer paired fins than their wild parents. We also found that artificially reared cisco were pugheaded, and this result held for another cisco population and rearing facility. Across the temperature treatments we tested, rearing temperatures did not impact the degree of pugheadedness or other morphological differences. Our results have important implications for coregonine restoration efforts. Future work should evaluate whether morphological differences that arise through artificial rearing affect cisco fitness in the wild.

Canadian Journal of Zoology↗

USGS2006

Safety of fish therapeutants to glochidia of the plain pocketbook mussel during encystment on largemouth bass

Mussel biologists and fisheries managers have developed propagation techniques to duplicate the natural glochidia infestation on host fish. However, in intensive culture situations, fish diseases may threaten the survival of both fish and their attached glochidia and chemical treatments may be required to control a disease epizootic. Five therapeutants were evaluated for their safety to largemouth bass Micropterus salmoides encysted with mussel glochidia by comparing the number of sloughed glochidia in the chemical treatment groups with that of an untreated control group. Largemouth bass were infested with glochidia from the plain pocketbook mussel Lampsilis cardium and treated with 20 mg chloramine-T/L, 2 mg Cutrine/L, or 200 mg formalin/L (trial 1) and 200 mg formalin/L, 100 mg hydrogen peroxide/L, or 20,000 mg sodium chloride/L (trial 2). Chemicals were applied for 60 min (15 min in the case of sodium chloride in trial 2) once every other day, for a total of three treatments (six in the case of formalin in trial 2). After the first treatment, aquaria were siphoned each weekday to determine the number of sloughed glochidia or transformed juveniles. In trial 1, the initial mean number of glochidia per fish ranged from 257 to 294, and approximately 94% of the glochidia transformed to juveniles. In trial 2, the initial mean number of glochidia per fish ranged from 97 to 115, and approximately 91% of the glochidia transformed to juveniles. The mean percent of sloughed glochidia varied by less than 2% among all test groups in each trial. There were no significant differences (P < 0.05) in the number of sloughed glochidia or transformed juveniles among control or treatment groups in either trial. Therapeutic treatment of diseased fish with chloramine-T, Cutrine, formalin, hydrogen peroxide, or sodium chloride at the treatment regimens evaluated are viable options for enhancing the survival of fish encysted with glochidia.

North American Journal of Aquaculture↗

USGS2011

Quantitative polymerase chain reaction (PCR) for detection of aquatic animal pathogens in a diagnostic laboratory setting

Real-time, or quantitative, polymerase chain reaction (qPCR) is quickly supplanting other molecular methods for detecting the nucleic acids of human and other animal pathogens owing to the speed and robustness of the technology. As the aquatic animal health community moves toward implementing national diagnostic testing schemes, it will need to evaluate how qPCR technology should be employed. This review outlines the basic principles of qPCR technology, considerations for assay development, standards and controls, assay performance, diagnostic validation, implementation in the diagnostic laboratory, and quality assurance and control measures. These factors are fundamental for ensuring the validity of qPCR assay results obtained in the diagnostic laboratory setting.

Journal of Aquatic Animal Health↗

USGS2011

A comparison of recharge rates in aquifers of the United States based on groundwater-age data

An overview is presented of existing groundwater-age data and their implications for assessing rates and timescales of recharge in selected unconfined aquifer systems of the United States. Apparent age distributions in aquifers determined from chlorofluorocarbon, sulfur hexafluoride, tritium/helium-3, and radiocarbon measurements from 565 wells in 45 networks were used to calculate groundwater recharge rates. Timescales of recharge were defined by 1,873 distributed tritium measurements and 102 radiocarbon measurements from 27 well networks. Recharge rates ranged from < 10 to 1,200 mm/yr in selected aquifers on the basis of measured vertical age distributions and assuming exponential age gradients. On a regional basis, recharge rates based on tracers of young groundwater exhibited a significant inverse correlation with mean annual air temperature and a significant positive correlation with mean annual precipitation. Comparison of recharge derived from groundwater ages with recharge derived from stream base-flow evaluation showed similar overall patterns but substantial local differences. Results from this compilation demonstrate that age-based recharge estimates can provide useful insights into spatial and temporal variability in recharge at a national scale and factors controlling that variability. Local age-based recharge estimates provide empirical data and process information that are needed for testing and improving more spatially complete model-based methods.

Hydrogeology Journal↗

USGS2008

Effectiveness of piscicides for controlling round gobies (Neogobius melanostomus)

Round gobies (Neogobius melanostomus) were introduced to the Great Lakes presumably as a result of ballast water releases from seagoing freighters returning from European water bodies. These unwelcome fish have become established in the Great Lakes region and are expanding their range to suitable portions of other interior drainage basins including the Mississippi River traversing the central United States and the Trent-Severn waterway spanning south-central Ontario. If the invasion continues, use of chemical toxicants as a control measure may be necessary. Toxicity tests of the currently registered piscicides antimycin, rotenone, 3-trifluoromethyl-4-nitrophenol (TFM), and Bayluscide?? were conducted with three fish species native to the Great Lakes and round gobies collected from the Illinois Waterway. Tests indicated that round gobies are sensitive to all of the piscicides, however, the level of sensitivity is similar to that of the native fish species tested. Therefore, currently registered piscicides have limited potential to selectively remove round gobies. Bottom-release formulations of Bayluscide?? and antimycin were also evaluated as control agents for the normally bottom-dwelling round goby. Avoidance behavior tests demonstrated that the round goby did not react to the presence of either chemical. Therefore, the bottom-release formulations may have some application for the selective removal of round gobies, and may be one of the few tools presently available to fishery managers to help limit the range expansion of this invasive fish.

Journal of Great Lakes Research↗

USGS2012

Contaminants in stream sediments from seven U.S. metropolitan areas: Data summary of a National Pilot Study

This report presents data collected as a part of a synoptic survey of stream sediment contaminants, associated watershed characteristics and invertebrate responses in laboratory sediment toxicity tests from 98 streams (sites) in seven metropolitan study areas across the continental United States. The report presents methods, data, and sediment-quality guidelines, including the derivation of a new sediment pyrethroid probable effects concentration, for the purposes of relating measured contaminants to land use and toxicity evaluation. The study evaluated sites that ranged in their degree of relative urbanization within the study areas of Atlanta, Boston, Dallas-Fort Worth, Denver, Milwaukee-Green Bay, Salt Lake City, and Seattle-Tacoma. In all, 108 chemical analytes quantified in the study are presented, by class and number of individual compounds, as follows: polyaromatic hydrocarbons (PAHs) (28), organochlorine pesticides (OCs) (18), polychlorinated biphenyls (Aroclors) (3), pyrethroid insecticides (14), fipronil compounds (4), priority trace and other major elements (41). The potential of these sediments to cause toxicity to sediment-dwelling invertebrates was evaluated using two standard sediment toxicity tests: a 28-day growth and survival toxicity test with the amphipod Hyalella azteca, and a 10-day growth and survival toxicity test with the midge Chironomus dilutus. Further, approximately 95 relevant watershed and reach-level characteristics were generated and are presented to aid in interpretation and explanation of contaminant and toxicity patterns. Interpretation of the findings of this study, including the relationships with urbanization and other factors, the relationship between sediment toxicity and sediment chemistry in the seven study areas, and the sources and occurrence of pyrethroid insecticides, are discussed in detail in a forthcoming series of journal articles.

Boston;Atlanta;Milwaukee;Green Bay;Dallas;Fort Wor↗

USGS1996

Assessing contamination in Great Lakes sediments using benthic invertebrate communities and the sediment quality triad approach

Sediments in many Great Lakes harbors and tributary rivers are contaminated. As part of the USEPA's Assessment and Remediation of Contaminated Sediment (ARCS) program, a number of studies were conducted to determine the nature and extent of sediment contamination in Great Lakes Areas of Concern (AOC). This paper describes the composition of benthic invertebrate communities in contaminated sediments and is one in a series of papers describing studies conducted to evaluate sediment toxicity from three AOC's (Buffalo River, NY; Indiana Harbor, IN; Saginaw River, MI), as part of the ARCS Program. Oligochaeta (worms) and Chironomidae (midge) comprised over 90% of the benthic invertebrate numbers in samples collected from depositional areas. Worms and midge consisted of taxa identified as primarily contaminant tolerant organisms. Structural deformities of mouthparts in midge larvae were pronounced in many of the samples. Good concurrence was evident between measures of laboratory toxicity, sediment contaminant concentration, and benthic invertebrate community composition in extremely contaminated samples. However, in moderately contaminated samples, less concordance was observed between the benthos community composition and either laboratory toxicity test results or sediment contaminant concentration. Laboratory sediment toxicity tests may better identify chemical contamination in sediments than many commonly used measures of benthic invertebrate community composition. Benthic measures may also reflect other factors such as habitat alteration. Evaluation of non-contaminant factors are needed to better interpret the response of benthic invertebrates to sediment contamination.

Journal of Great Lakes Research↗

USGS1973

Nutritional factors in the biochemical pathology of Corynebacterial kidney disease in the coho salmon (Oncorhynchus kisutch)

The influence of diet ingredient on the morbidity and biochemical pathogenesis of corynebacterial kidney disease was investigated using juvenile coho salmon ( Oncorhynchus kisutch ) fed the Abernathy dry ration made up with either corn gluten or cottonseed meal (isoprotein, isocaloric substitution). Evaluation of incidence of infection, pituitary activation and aspects of carbohydrate metabolism, acid-base balance, renal function, and hematopoietic activity showed that the actual disease incidence was about the same for both diets but the nonspecific stress of infection was more severe in fish fed the corn gluten.Discriminant function calculations combining four physiological parameters gave a probability of 0.86 for successfully diagnosing infected fish on the basis of these blood chemistry tests.

Journal of the Fisheries Research Board of Canada↗

USGS1949

Rodent-repellent studies. III. Advanced studies in the evaluation of chemical repellents

In order to bridge the gap between preliminary screening of chemicals for potential rodent repellency and the application of these compounds to paper cartons, more advanced studies in the evaluation of promising materials have been carried out. These studies have resulted in: (1) a modification of the food acceptance technique which eliminates doubtful compounds and also provides a closer analogy to the ultimate goal, and (2) a method for rapidly testing chemicals incorporated in paper. When the results of these latter tests are expressed as a function of time, it can be shown that a distinct correlation exists between the deterrency exhibited by treated paper and the repellency of treated food.

Journal of the American Pharmaceutical Association↗

USGS2019

India National Gas Hydrate Program Expedition 02 summary of scientiﬁc results: Numerical simulation of reservoir response to depressurization

The India National Gas Hydrate Program Expedition 02 (NGHP-02) discovered gas hydrate at high saturation in sand reservoirs at several sites in the deepwater Bay of Bengal. To assess the potential response of those deposits to scientific depressurization experiments, comprehensive geologic models were constructed to enable numerical simulation for two sites. Both sites (NGHP-02-09 and NGHP-02-16) feature thick sequences of thinly-interbedded reservoir and non-reservoir facies at sub-seafloor depths of less than 300 m and sub-sea depths of 2,400 m or more. These settings pose significant challenges to current modeling capabilities. First, the thinly-bedded reservoir architecture complicates the determination of basic reservoir parameters from both log and core data due to measurement resolution issues. Secondly, the fine-scale variation in sediment properties imparts great contrasts in key parameters over very short distances, creating high gradients at multiple scales and varying orientations that necessitate careful design of high-definition simulation grids. Thirdly, the deposits include internal sources of water, as well as a range of complex boundary conditions, including variable permeability within the overlying mud-rich “seals”, that complicate reservoir depressurization. Lastly, because of the unique combination of great water depth and relatively shallow sub-seafloor depth, models designed to maximize the dissociation rate impose large pressure drawdowns on relatively low-strength sediments. This condition renders the proper evaluation and integration of the geomechanical response to hydrate dissociation critical. In this report, we review the history of gas hydrate reservoir simulation, discuss methods for creating geologic input models, and summarize the key findings and implications of the collaborative NGHP-02 numerical simulation effort. Together, the studies confirm the viability of the modeled accumulations for scientific testing and identify key challenges related to the selection of specific test sites and the design of test wells.

Journal of Marine and Petroleum Geology↗

USGS2012

Efficacy, fate, and potential effects on salmonids of mosquito larvicides in catch basins in Seattle, Washington

We investigated the efficacy, fate, and potential for direct effects on salmonids of 4 common mosquito larvicides (Mosquito Dunks® and Bits® (AI: Bacillis thuringiensis var. israelensis, [Bti]), VectoLex® WSP (AI: Bacillus sphaericus [Bs], VectoLex CG [AI: Bs], and Altosid® Briquets [AI: s-methoprene]) in Seattle, WA, during 3 summers. During efficacy trials in 2006, all treatments resulted in a rapid reduction in number of mosquito pupae (Mosquito Dunks and Bits and VectoLex WSP) or emergence success (Altosid Briquets). VectoLex CG was chosen for city-wide application in 2007 and 2008. The average counts of pupae within round-top basins remained significantly below the control average for 11 wk in 2007, whereas efficacy in grated-top basins was short-lived. In 2008 the average counts of pupae within grated-top basins remained significantly below the control average for 10 wk. Altosid XR was also effective in reducing adult emergence within grated basins in 2008. In 2007 and 2008, frequent precipitation events made the evaluation of efficacy difficult due to reductions in pupae across control and treated basins. Four separate analyses of VectoLex products revealed that the product was a combination of Bs and Bti. Both Bs and Bti were detected in 3 urban creeks connected to treated basins in 2007 and 2008. Laboratory toxicity test results suggest that concentrations of Bs and Bti detected in each of the watersheds pose little direct hazard to juvenile salmonids.

Washington↗

USGS2019

Simplification of polylines by segment collapse: Minimizing areal displacement while preserving area

This paper reports on a new Area Preserving Segment Collapse (APSC) algorithm for simplifying polygonal boundaries while preserving polygonal area at simplified target scales and minimizing areal displacement. A general segment collapse algorithm is defined by iteratively collapsing segments to Steiner points in priority order, guided by placement and displacement functions. The algorithm is specified by defining functions that minimize areal displacement under the constraint that the areas of adjoining polygons are preserved exactly. Self-intersections can be avoided by testing for intersections with two new line segments associated with each segment collapse operation. The paper demonstrates simplification results for a sample of 10 lakes formed from alpine, Karst, glacial and arid desert processes as well as artificial dams. APSC results are compared with three other simplification routines and evaluated for area preservation, linear and areal displacement, complexity and introduction of boundary self-intersections. Results confirm that the APSC algorithm preserves area exactly and indicate that it outperforms the other tested algorithms for minimizing areal displacement while producing reasonably low measures of linear displacement. Self-intersections can occur more commonly with APSC than other algorithms but are avoided with the proposed topology check. The APSC algorithm additionally preserves polygon complexity better than other tested algorithms.

International Journal of Cartography↗

USGS2001

Statistical properties of relative weight distributions of four salmonid species and their sampling implications

We assessed relative weight (Wr) distributions among 291 samples of stock-to-quality-length brook trout Salvelinus fontinalis, brown trout Salmo trutta, rainbow trout Oncorhynchus mykiss, and cutthroat trout O. clarki from lentic and lotic habitats. Statistics describing Wr sample distributions varied slightly among species and habitat types. The average sample was leptokurtotic and slightly skewed to the right with a standard deviation of about 10, but the shapes of Wr distributions varied widely among samples. Twenty-two percent of the samples had nonnormal distributions, suggesting the need to evaluate sample distributions before applying statistical tests to determine whether assumptions are met. In general, our findings indicate that samples of about 100 stock-to-quality-length fish are needed to obtain confidence interval widths of four Wr units around the mean. Power analysis revealed that samples of about 50 stock-to-quality-length fish are needed to detect a 2% change in mean Wr at a relatively high level of power (beta = 0.01, alpha = 0.05).

North American Journal of Fisheries Management↗

USGS2003

The effect of entrapped nonaqueous phase liquids on tracer transport in heterogeneous porous media: Laboratory experiments at the intermediate scale

This work considers the applicability of conservative tracers for detecting high-saturation nonaqueous-phase liquid (NAPL) entrapment in heterogeneous systems. For this purpose, a series of experiments and simulations was performed using a two-dimensional heterogeneous system (10??1.2 m), which represents an intermediate scale between laboratory and field scales. Tracer tests performed prior to injecting the NAPL provide the baseline response of the heterogeneous porous medium. Two NAPL spill experiments were performed and the entrapped-NAPL saturation distribution measured in detail using a gamma-ray attenuation system. Tracer tests following each of the NAPL spills produced breakthrough curves (BTCs) reflecting the impact of entrapped NAPL on conservative transport. To evaluate significance, the impact of NAPL entrapment on the conservative-tracer breakthrough curves was compared to simulated breakthrough curve variability for different realizations of the heterogeneous distribution. Analysis of the results reveals that the NAPL entrapment has a significant impact on the temporal moments of conservative-tracer breakthrough curves. ?? 2003 Elsevier B.V. All rights reserved.

Journal of Contaminant Hydrology↗

USGS2016

1984–2010 trends in fire burn severity and area for the conterminous US

Burn severity products created by the Monitoring Trends in Burn Severity (MTBS) project were used to analyse historical trends in burn severity. Using a severity metric calculated by modelling the cumulative distribution of differenced Normalized Burn Ratio (dNBR) and Relativized dNBR (RdNBR) data, we examined burn area and burn severity of 4893 historical fires (1984–2010) distributed across the conterminous US (CONUS) and mapped by MTBS. Yearly mean burn severity values (weighted by area), maximum burn severity metric values, mean area of burn, maximum burn area and total burn area were evaluated within 27 US National Vegetation Classification macrogroups. Time series assessments of burned area and severity were performed using Mann–Kendall tests. Burned area and severity varied by vegetation classification, but most vegetation groups showed no detectable change during the 1984–2010 period. Of the 27 analysed vegetation groups, trend analysis revealed burned area increased in eight, and burn severity has increased in seven. This study suggests that burned area and severity, as measured by the severity metric based on dNBR or RdNBR, have not changed substantially for most vegetation groups evaluated within CONUS.

International Journal of Wildland Fire↗

USGS2012

Multivariate statistical approach to estimate mixing proportions for unknown end members

A multivariate statistical method is presented, which includes principal components analysis (PCA) and an end-member mixing model to estimate unknown end-member hydrochemical compositions and the relative mixing proportions of those end members in mixed waters. PCA, together with the Hotelling T 2 statistic and a conceptual model of groundwater flow and mixing, was used in selecting samples that best approximate end members, which then were used as initial values in optimization of the end-member mixing model. This method was tested on controlled datasets (i.e., true values of estimates were known a priori) and found effective in estimating these end members and mixing proportions. The controlled datasets included synthetically generated hydrochemical data, synthetically generated mixing proportions, and laboratory analyses of sample mixtures, which were used in an evaluation of the effectiveness of this method for potential use in actual hydrological settings. For three different scenarios tested, correlation coefficients ( R 2 ) for linear regression between the estimated and known values ranged from 0.968 to 0.993 for mixing proportions and from 0.839 to 0.998 for end-member compositions. The method also was applied to field data from a study of end-member mixing in groundwater as a field example and partial method validation.

Journal of Hydrology↗