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USGS2018

Reported investments in earthquake mitigation top $73 to $80 billion in the San Francisco Bay Area, California, since the 1989 Loma Prieta earthquake

The purpose of this report is to provide a compilation of structural retrofits and replacements of older buildings and infrastructure in the San Francisco Bay Area that have either been completed since 1989 or that are in progress as of October 2018. For the purposes of this report, all or parts of nine Bay Area counties were included: Alameda, Contra Costa, Marin, Napa, San Francisco, San Mateo, Santa Clara, Solano, and Sonoma. Santa Cruz County was not included. The compilation of 700 investments is presented as a table in the appendix. We consider this table as version 1, as we urge that those familiar with additional projects contact the report authors with information to update the table. In total, we have identified \$73 to \$80 billion in investments to retrofit or replace structures to mitigate the impacts of future San Francisco Bay Area earthquakes. These totals represent an average investment of \$2.5 to \$2.8 billion per year in retrofits and replacement of structures since 1989.

California↗

USGS1999

Wide-angle seismic recordings from the 1998 Seismic Hazards Investigation of Puget Sound (SHIPS), western Washington and British Columbia

This report describes the acquisition and processing of deep-crustal wide-angle seismic reflection and refraction data obtained in the vicinity of Puget Lowland, the Strait of Juan de Fuca, and Georgia Strait, western Washington and southwestern British Columbia, in March 1998 during the Seismic Hazards Investigation of Puget Sound (SHIPS). As part of a larger initiative to better understand lateral variations in crustal structure along the Cascadia margin, SHIPS participants acquired 1000 km of deep-crustal multichannel seismic-reflection profiles and 1300 km of wideangle airgun shot lines in this region using the R/V Thompson and R/V Tully. The Tully was used to record airgun shots fired by the Thompson in two different geometries: (1) expanding spread profiles (ESPs) and (2) constant offset profiles (COPs). Prior to this reflection survey, we deployed 257 Reftek and 15 ocean-bottom seismic recorders to record the airgun signals at far offsets. All data were recorded digitally on large-capacity hard disks. Although most of these stations only recorded the vertical component of motion, 95 of these seismographs recorded signals from an oriented 3-component seismometer. By recording signals generated by the Thompson's marine air gun array, operated in two differing geometries having a total volume of 110 and 79 liters (6730 and 4838 cu. in.), respectively, the arrays of wide-angle recorders were designed to (1) image the crustal structure, particularly in the vicinity of crustal faults and Cenozoic sedimentary basins, (2) determine the geometry of the Moho, and (3) image the subducting Gorda and Juan de Fuca plates. Nearly 33,300 air gun shots were recorded along several seismic lines. In this report, we illustrate the expanding spread profiles acquired using the Thompson and Tully, describe the land and ocean-bottom recording of the air gun signals, discuss the processing of the land recorder data into common receiver gathers, and illustrate the processed wide-angle seismic data collected using the Refteks and ocean-bottom seismometers. We also describe the format and content of the archival tapes containing the SEGY-formated, common-receiver gathers for the Reftek data. Data quality is variable but SHIPS appears to have successfully obtained useful data from almost all the stations deployed to record the airgun shots. Several interesting arrivals were observed: including refractions from the sedimentary basin fill in several basins, refractions from basement rocks forming the upper crust, Pg, refractions from the upper mantle, Pn, as well as reflections from within the crust and from the top of the upper mantle, PmP. We separately archived more than 30 local earthquakes recorded by the Reftek array during our deployment.

Washington↗

USGS2007

Bacterioplankton communities of Crater Lake, OR: Dynamic changes with euphotic zone food web structure and stable deep water populations

The distribution of bacterial and archaeal species in Crater Lake plankton varies dramatically over depth and with time, as assessed by hybridization of group-specific oligonucleotides to RNA extracted from lakewater. Nonmetric, multidimensional scaling (MDS) analysis of relative bacterial phylotype densities revealed complex relationships among assemblages sampled from depth profiles in July, August and September of 1997 through 1999. CL500-11 green nonsulfur bacteria (Phylum Chloroflexi) and marine Group I crenarchaeota are consistently dominant groups in the oxygenated deep waters at 300 and 500 m. Other phylotypes found in the deep waters are similar to surface and mid-depth populations and vary with time. Euphotic zone assemblages are dominated either by ??-proteobacteria or CL120-10 verrucomicrobia, and ACK4 actinomycetes. MDS analyses of euphotic zone populations in relation to environmental variables and phytoplankton and zooplankton population structures reveal apparent links between Daphnia pulicaria zooplankton population densities and microbial community structure. These patterns may reflect food web interactions that link kokanee salmon population densities to community structure of the bacterioplankton, via fish predation on Daphnia with cascading consequences to Daphnia bacterivory and predation on bacterivorous protists. These results demonstrate a stable bottom-water microbial community. They also extend previous observations of food web-driven changes in euphotic zone bacterioplankton community structure to an oligotrophic setting. ?? 2007 Springer Science+Business Media B.V.

Hydrobiologia↗

USGS2006

Fish-assemblage variation between geologically defined regions and across a longitudinal gradient in the Monkey River Basin, Belize

Linkages between geology and fish assemblages have been inferred in many regions throughout the world, but no studies have yet investigated whether fish assemblages differ across geologies in Mesoamerica. The goals of our study were to: 1) compare physicochemical conditions and fish-assemblage structure across 2 geologic types in headwaters of the Monkey River Basin, Belize, and 2) describe basin-scale patterns in fish community composition and structure for the benefit of conservation efforts. We censused headwater-pool fishes by direct observation, and assessed habitat size, structure, and water chemistry to compare habitat and fish richness, diversity, evenness, and density between streams in the variably metamorphosed sedimentary geologic type typical of 80% of Belize’s Maya Mountains (the Santa Rosa Group), and an anomalous extrusive geologic formation in the same area (the Bladen Volcanic Member). We also collected species-presence data from 20 sites throughout the basin for analyses of compositional patterns from the headwaters to the top of the estuary. Thirty-nine fish species in 21 families were observed. Poeciliids were numerically dominant, making up 39% of individuals captured, followed by characins (25%), and cichlids (20%). Cichlidae was the most species-rich family (7 spp.), followed by Poeciliidae (6 spp.). Habitat size and water chemistry differed strongly between geologic types, but habitat diversity did not. Major fish-assemblage differences also were not obvious between geologies, despite a marked difference in the presence of the aquatic macrophyte, Marathrum oxycarpum (Podostemaceae), which covered 37% of the stream bottom in high-nutrient streams draining the Santa Rosa Group, and did not occur in the low-P streams draining the Bladen Volcanic Member. Correlation analyses suggested that distance from the sea and amount of cover within pools are important to fish-assemblage structure, but that differing abiotic factors may influence assemblage structure within each geologic type. The fauna showed weak compositional zonation into 3 groups (headwaters, coastal plain, and nearshore). Nearly 20% of the fish species collected have migratory life cycles (including Joturus pichardi , Agonostomus monticola , and Gobiomorus dormitor ) that use freshwater and marine habitats. Some of these species probably rely on a natural flow regime and longitudinal connectivity for reproduction and dispersal of young, and natural flow regime and longitudinal connectivity are important factors for maintenance of functional linkages between the uplands and the coast in the ridge-to-reef corridor where the Monkey River is located. Therefore, we suggest that the viability of migratory fish populations may be a good biological indicator of upland-to-estuary connectivity important both to fishes and coastal ecosystem function. We recommend follow-up studies to substantiate the relative strengths of relationships between community structure and abiotic factors in contrasting geologies and to examine potential bottom−up responses of stream biota to the higher nutrient levels that were observed in stream waters draining the Santa Rosa Group geologic type.

Journal of the North American Benthological Societ↗

USGS1989

Glacimarine sedimentary processes, facies and morphology of the south-southeast Alaska shelf and fjords

High precipitation from Gulf of Alaska air masses can locally reach up to 800 cm a −1 . This precipitation on tectonically active mountains creates cool-temperate glaciation with extremely active erosion and continuously renewed resources. High basal debris loads up to 1.5 m thick of pure debris and rapid glacial flow, which can be more than 3000 m a −1 , combine to produce large volumes of siliciclastic glacimarine sediment at some of the highest sediment accumulation rates on record. At tidewater fronts of valley glaciers, sediment accumulation rates can be over 13 m a −1 and deltas commonly grow at about 10 6 m 3 a −1 . Major processes influencing glacimarine sedimentation are glacial transport and glacier-contact deposition, meltwater (subaerial and submarine) and runoff transport and deposition, iceberg rafting and gouging, sea-ice transport, wave action and storm reworking, tidal transport and deposition, alongshelf transport, sliding and slumping and gravity flows, eolian transport, and biogenic production and reworking. Processes are similar in both shelf and fjord settings; however, different intensities of some processes create different facies associations and geometries. The tectonoclimatic regime also controls morphology because bedrock structure is modified by glacial action. Major glacimarine depositional systems are all siliciclastic. They are subglacial, marginal-morainal bank and submarine outwash, and proglacial/paraglacial-fluvial/deltaic, beach, tidal flat/estuary, glacial fjord, marine outwash fjord and continental shelf. Future research should include study of long cores with extensive dating and more seismic surveys to evaluate areal and temporal extent of glacial facies and glaciation; time-series oceanographic data, sidescan sonar surveys and submersible dives to evaluate modern processes; biogenic diversity and production to evaluate paleoecological, paleobiogeographic and biofacies analysis; and detailed comparisons of exposed older rock of the Yakataga Formation to evaluate how glacial style has evolved over 6.3 Ma.

Marine Geology↗

USGS1991

Structure and morphology of submarine slab slides: clues to origin and behavior

Geologic features suggest that some slab slides probably result from long-term strength degradation of weak layers deep in the homoclinal section. Time-dependent strain in clay-rich layers can create potential slide surfaces of low frictional strength. Competent layers are weak in tension and probably fragment in the first instance of, or even prior to, translation, and the allochthonous mass is readily transformed into a high-momentum debris flow. The structure and geomorphology of slab slides provide important clues to their origin and behavior. -from Author

Marine Geotechnology↗

USGS2011

Shallow stratigraphy of the Skagit River Delta, Washington, derived from sediment cores

Sedimentologic analyses of 21 sediment cores, ranging from 0.4 to 9.6 m in length, reveal that the shallow geologic framework of the Skagit River Delta, western Washington, United States, has changed significantly since 1850. The cores collected from elevations of 3.94 to -2.41 m (relative to mean lower low water) along four cross-shore transects between the emergent marsh and delta front show relatively similar environmental changes across an area spanning ~75 km 2 . Offshore of the present North Fork Skagit River and South Fork Skagit River mouths where river discharge is focused by diked channels through the delta, the entire 5–7-km-wide tidal flats are covered with 1–2 m of cross-bedded medium-to-coarse sands. The bottoms of cores, collected in these areas are composed of mud. A sharp transition from mud to a cross-bedded sand unit indicates that the tidal flats changed abruptly from a calm environment to an energetic one. This is in stark contrast to the Martha's Bay tidal flats north of the Skagit Bay jetty that was completed in the 1940s to protect the newly constructed Swinomish Channel from flooding and sedimentation. North of the jetty, mud ranging from 1 to 2 m thick drapes a previously silt- and sand-rich tidal flat. The silty sand is a sediment facies that would be expected there where North Fork Skagit River sedimentation occurred prior to jetty emplacement. This report describes the compositional and textural properties of the sediment cores by using geophysical, photographic, x-radiography, and standard sediment grain-size and carbon-analytical methods. The findings help to characterize benthic habitat structure and sediment transport processes and the environmental changes that have occurred across the nearshore of the Skagit River Delta. The findings will be useful for quantifying changes to nearshore marine resources, including impacts resulting from diking, river-delta channelization, shoreline development, and natural variations in fluvial-sediment inputs. These results also provide important quantitative data on the amount of sediment delivered to the nearshore from the Skagit River for use in calculating sediment budgets for application to watershed planning and wetland and coastal-ecosystem restoration.

Washington↗

USGS2017

Baseline assessments for coral reef community structure and demographics on West Maui

The coastal and upslope terrains of West Maui have had a long history of impacts owing to more than a century of human activities. Resource extraction, agriculture, as well as residential and resort development have caused land-based pollution that impairs water quality and adversely impact the adjacent marine ecosystem. Today, West Maui’s coral reefs are chronically impacted by the effects of land-based pollution, mainly sedimentation and nutrients, with documented losses of 30 – 75% in coral cover over the last 20 years. Nonetheless, despite their current status and levels of environmental impact, these coral reef communities represent a key local resource and a counterpoint to the overall low coral reef development levels both island- and state-wide. This is of high relevance because the occurrence of coral-rich assemblages and accreted reef complexes statewide is sparse. Only limited segments along the coastlines of Maui, Hawai‘i, Lana‘i, Moloka‘i, and Kaho‘olawe, harbor mature, fringing coral reefs; and unfortunately, many of them are seriously threatened by terrestrial runoff. This report describes the results of baseline assessment surveys of coral reef benthic structure, coral community demographics, and coral condition. These surveys are intended to provide benchmarks for continued monitoring efforts and provide a gauge for comparing and evaluating the effectiveness of management actions to reduce land-based sources of pollution in priority watersheds on West Maui. Within this context, 12 permanent, long-term monitoring sites were strategically established adjacent to the 7 primary stream drainages (Wahikuli, Honokōwai, Mahinahina, Kahana/Ka‘opala, Honokeana, Honokahua, and Honolua) within the five priority watersheds (Wahikuli, Honokōwai, Kahana, Honokahua, and Honolua). Herein, benthic cover and composition, coral demographics, and coral condition of the monitoring sites are described and contrasted in the “Benthic Characterization” and “Synthesis and Discussion” sections of this report. The baseline assessments revealed that although some areas harbor prominent coral reef structures with high live coral cover and multispecies assemblages, others are characterized by sediment-impacted corals in impoverished and species-poor communities. Mean coral cover varied widely, from 49% at Wahikuli-shallow to 4.6% at Mahinahina-shallow. Similarly, coralline algal cover averaged 12.7% at Ka‘opala and Honokeana-north, but was altogether absent at the Mahinahina sites. Macroalgae was a minor component of the benthos across all study sites, representing only up to 2.3% at Mahinahina-south, while turf algae varied considerably, from 41% at Honokeana-north to 84% at the Honokahua site. Consequently, the Benthic Substrate Ratio (BSR) also varied considerably region wide, with the highest values (≥ 1), suggesting a healthier reef condition reported for the Wahikuli, Honokeana, and Honokōwai sites; and the lowest (≤ 0.5), suggesting impairment in structure and function, recorded at the Honolua and Honokahua sites. Adult colony densities were the highest at the Wahikuli (27 col/m 2 ) but lowest at the Ka‘opala (7 col/m2 ) site. And, colony partial mortality peaked at the Ka‘opala (33%) and was the lowest at the Honokeana Bay (12%). Moreover, in-situ and derived estimates of water turbidity and sediment loading revealed that the Ka‘opala and Wahikuli stream sites ranked the highest for turbidity, whereas the Honokōwai and Ka‘opala sites ranked highest for sediment loading. Chronic and episodic terrestrial sediment stress has resulted in coral reef community demise, clearly illustrated at the Honolua, Honokahua, and Ka‘opala sites, where coral benthic cover and colony abundances ranked the lowest and levels of turf algae ranked among the highest. Left unattended, land-based pollution impacts will continue to negatively affect the coral reef communities of West Maui. And, under the current turbidity and sediment loading conditions, the coral-rich habitats in the Wahikuli and Honōkowai Watersheds are probably at greatest risk, given they harbor the most prominent and well-developed reefs in the region, characterized by the highest coral cover, colony densities, and structural complexity.

Hawaii↗

USGS2014

Unique characteristics of the trachea of the juvenile leatherback turtle facilitate feeding, diving and endothermy

The adult leatherback turtle Dermochelys coriacea overlaps in body size (300–500 kg) with many marine mammals, yet develops from a 50 g hatchling. Adults can dive deeper than 1200 m and have core body temperatures of 25 °C; hatchlings are near-surface dwellers. Juvenile leatherbacks have rarely been studied; here we present anatomical information for the upper respiratory tract of 3 turtles (66.7–83.0 cm straight carapace length; 33.2–53.4 kg body mass) incidentally captured by long-line fisheries. Combined with existing information from adults and hatchlings, our data show that there is an ontogenic shift in tracheal structure, with cartilaginous rings becoming broader and eventually fusing anteriorly. This ontogenic shift during independent existence is unique among extant deep-diving air breathing vertebrates. Tract wall thickness is graded, becoming progressively thinner from larynx to bronchi. In addition, cross-sectional shape becomes increasingly dorsoventrally flattened (more elliptical) from anterior to posterior. These characteristics ensure that the tract will collapse from posterior to anterior during dives. This study contains the first report of a double (= internally bifurcated) posterior section of the trachea; it is suggested that this allows continuous food movement along the esophagus without tracheal collapse. The whole upper respiratory tract (from larynx to lungs) has a vascular lining (thicker anteriorly than posteriorly) that appears to be a simple analog of the complex turbinates of birds and mammals. Our study confirmed that the leatherback tracheal structure represents a distinctive way of dealing with the challenges of diving in deep, cold sea water.

Journal of Experimental Marine Biology and Ecology↗

USGS2010

Sedimentation Survey of Lago Patillas, Puerto Rico, March 2007

Lago Patillas is a reservoir located on the confluence of Rio Grande de Patillas and Rio Marin, in the municipality of Patillas in southern Puerto Rico, about 3 kilometers north of the town of Patillas and about 8 kilometers northeast of the town of Arroyo (fig. 1). The dam is owned and operated by the Puerto Rico Electric Power Authority (PREPA) and was constructed in 1914 for the irrigation of croplands in the southern coastal plains of Puerto Rico along the towns of Arroyo, Guayama, Patillas, and Salinas. Irrigation releases are made through the outlet works into the Patillas Irrigation Canal that extends 32.2 kilometers from the Patillas dam to Rio Salinas. The dam is a semi-hydraulic earthfill with a structural height of 44.80 meters, a top width of 4.57 meters, a base width of 190.49 meters, and a crest length of 325.21 meters. The spillway structure is physically separated from the earthfill dam, has an elevation of 58.21 meters above mean sea level, and has three radial arm gates (Puerto Rico Electric Power Authority, 1979). The reservoir impounds the waters of the Rio Grande de Patillas and Rio Marin. The reservoir has a drainage area of 66.3 square kilometers. Additional information and operational procedures are listed in Soler-Lopez and others (1999). During March 14-15, 2007, the U.S. Geological Survey (USGS), Caribbean Water Science Center (CWSC), in cooperation with the PREPA conducted a bathymetric survey of Lago Patillas to update the reservoir storage capacity and update the reservoir sedimentation rate by comparing the 2007 bathymetric survey data with previous 1997 data. The purpose of this report is to update the reservoir storage capacity, sedimentation rates, and areas of substantial sediment accumulation since April 1997.

Lago Patillas;Puerto Rico↗

USGS1967

Geology and ground water of the Savannah River Plant and vicinity, South Carolina

The area described in this report covers approximately 2,600 square miles in west-central South Carolina and includes the site of the Savannah River Plant, a major production facility of the U.S. Atomic Energy Commission. The climate, surface drainage, and land forms of the study area are typical of the southern part of the Atlantic Coastal Plain. Precipitation is normally abundant and fairly evenly distributed throughout the year, and the mean annual temperature is moderately warm (64?F). The major streams that drain the area (the Savannah, Salkehatchie, and Edisto Rivers) have low gradients and flow in a southeasterly direction toward the Atlantic Ocean. Surface features of the area include narrow, flat-bottomed, steep-sided valleys and broad gently rolling interfluvial areas. Those parts of the Coastal Plain included within the report area can be subdivided into the Aiken Plateau, the Congaree Sandhills, and the Coastal Terraces. The area is underlain by a sequence of unconsolidated and partly consolidated sediments of Late Cretaceous, Tertiary, and Quaternary age. The unconsolidated sediments were deposited unconformably on a basement of igneous and metamorphic rocks of Precambrian and Paleozoic age and sedimentary rocks of Triassic age. The basement rocks are similar to the granite-diorite complex of the Charlotte Belt, the metamorphosed rocks of the Carolina Slate Belt, and the consolidated sediments of the Newark Group. The unconsolidated sediments strike about N. 60 ? E. and dip 6-20 feet per mile to the southeast. They form a wedge-shaped mass that increases in thickness toward the southeast to slightly more than 1,200 feet in the vicinity of Allendale, S.C., on the southeast or downdip side of the study area. The oldest or lowermost unconsolidated sedimentary unit, the Tuscaloosa Formation of Late Cretaceous age, is overlain in the subsurface by beds that are also probably Late Cretaceous in age and that herein are named the Ellenton Formation. The Upper Cretaceous deposits are, in turn, overlain by the, McBean Formation and the Congaree(?) Formation of middle Eocene age, the Barnwell Formation of late Eocene age, the Hawthorn Formation of early and middle Miocene age, and by fluvial and marine(?) terrace deposits of Pliocene(?), Pleistocene, and Recent age. In the mapped area, the Congaree(?) Formation includes undifferentiated rocks (mostly Congaree and Barnwell Formations and some Mcbean outliers). (See map explanation.) Structurally, the Upper Cretaceous sediments are overlapped to the northwest by Tertiary deposits. A preliminary geologic map of the general area is included in the report. The principal aquifer in the area is composed of the beds of medium to coarse sand and gravel contained in the Tuscaloosa and Ellenton Formations. Subordinate aquifers include deposits of sand and limestone of Tertiary and Quaternary age. The ground water in the principal aquifer occurs under water-table conditions in the outcrop area of the Tuscaloosa Formation in the northern and western parts of the study area, but it is under artesian pressure downdip in the southern and eastern parts of the study area. Contours drawn on the piezometric surface of the water in the principal aquifer indicate that water is recharged to the aquifer mainly by leakage through the overlying Tertiary formations. Likewise, the piezometric contours show that the outcrop area of the Tuscaloosa Formation functions chiefly as an area of discharge. Doubtless, water is also discharged from the aquifer by moving downdip to areas near the coast where the prevailing hydraulic gradient may favor the upward leakage of water through the upper confining beds. The hydraulic properties of the principal aquifer were determined by a series of pumping tests. The results indicate that the aquifer is highly productive and could supply 15 million gallons per day in the vicinity of the Savannah River Plant without exceeding the available drawdown.

South Carolina↗

USGS2004

Assessing the record and causes of Late Triassic extinctions

Accelerated biotic turnover during the Late Triassic has led to the perception of an end-Triassic mass extinction event, now regarded as one of the "big five" extinctions. Close examination of the fossil record reveals that many groups thought to be affected severely by this event, such as ammonoids, bivalves and conodonts, instead were in decline throughout the Late Triassic, and that other groups were relatively unaffected or subject to only regional effects. Explanations for the biotic turnover have included both gradualistic and catastrophic mechanisms. Regression during the Rhaetian, with consequent habitat loss, is compatible with the disappearance of some marine faunal groups, but may be regional, not global in scale, and cannot explain apparent synchronous decline in the terrestrial realm. Gradual, widespread aridification of the Pangaean supercontinent could explain a decline in terrestrial diversity during the Late Triassic. Although evidence for an impact precisely at the boundary is lacking, the presence of impact structures with Late Triassic ages suggests the possibility of bolide impact-induced environmental degradation prior to the end-Triassic. Widespread eruptions of flood basalts of the Central Atlantic Magmatic Province (CAMP) were synchronous with or slightly postdate the system boundary; emissions of CO2 and SO2 during these eruptions were substantial, but the contradictory evidence for the environmental effects of outgassing of these lavas remains to be resolved. A substantial excursion in the marine carbon-isotope record of both carbonate and organic matter suggests a significant disturbance of the global carbon cycle at the system boundary. Release of methane hydrates from seafloor sediments is a possible cause for this isotope excursion, although the triggering mechanism and climatic effects of such a release remain uncertain. ?? 2003 Elsevier B.V. All rights reserved.

Earth-Science Reviews↗

USGS2024

Local environmental conditions structured discrete fish assemblages in Arctic lagoons

Rapid changes in sea ice extent and changes in freshwater inputs from land are rapidly changing the nature of Arctic estuarine ecosystems. In the Beaufort Sea, these nearshore habitats are known for their high productivity and mix of marine resident and diadromous fishes that have great subsistence value for Indigenous communities. There is, however, a lack of information on the spatial variation among Arctic nearshore fish communities as related to environmental drivers. In summers of 2017–2019, we sampled fishes in four estuarine ecosystems to assess community composition and relate fish abundance to temperature, salinity, and wind conditions. We found fish communities were heterogeneous over larger spatial extents with rivers forming fresh estuarine plumes that supported diadromous species (e.g., broad whitefish Coregonus nasus ), while lagoons with reduced freshwater input and higher salinities were associated with marine species (e.g., saffron cod Eleginus gracilis ). West–East directional winds accounted for up to 66% of the community variation, indicating importance of the wind-driven balance between fresh and marine water masses. Salinity and temperature accounted for up to 54% and 37% of the variation among lagoon communities, respectively. Recent sea ice declines provide more opportunity for wind to influence oceanographic conditions and biological communities. Current subsistence practices, future commercial fishing opportunities, and on-going oil and gas activities benefit from a better understanding of current fish community distributions. This work provides important data on fish spatial distributions and community composition, providing a basis for fish community response to changing climatic conditions and anthropogenic use.

Polar Biology↗

USGS2019

Phytoplankton community structure response to groundwater-borne nutrients in the inland bays, Delaware

To determine the impacts of groundwater-borne nutrients on phytoplankton biomass and community structure, we conducted a series of mesocosm experiments in the Inland Bays of Delaware. Four treatments were tested, including mesocosms coupled directly to submarine groundwater seepage, mesocosms with the addition of pumped submarine groundwater, mesocosms with the addition of phosphate, and control mesocosms with no nutrient addition. We measured chlorophyll a concentrations as a proxy for overall biomass and used genetic sequencing techniques to characterize the phytoplankton community structure. Groundwater carried a high N load to the estuary with NO 3 - up to 295 µmol l -1 and NH 4 + up to 55 µmol l -1 . As a result, treatment mesocosms had elevated NO 3 - and NH 4 + , while control mesocosms were relatively low in nutrients. In June, the highest chlorophyll a concentrations occurred in mesocosms attached to seepage meters after 3.5 d, with significant differences across all treatments. In August, groundwater-amended mesocosms reached the highest biomass concentrations, which peaked after 3 d. There were significant differences across all treatments, except control and phosphate-amended mesocosms which remained unchanged. Community sequence data showed that species assemblage was also impacted by availability of nutrients, with significant differences in community structure for mesocosms receiving nutrients vs. control mesocosms in both June and August experiments. Harmful algal species proliferated in high nutrient treatments, including Cylindrotheca closterium , Karlodinium veneficum , Nitzschia spp., and Heterocapsa spp. While the general relationship between nutrient supply and biomass production is well known, we demonstrate the role groundwater-borne nutrients and sediment processes play in shaping community structure in estuarine primary producers and in promoting harmful algal blooms.

Delaware↗

USGS2004

Isolation and characterization of a rhabdovirus from starry flounder (Platichthys stellatus) collected from the northern portion of Puget Sound, Washington, USA

The initial characterization of a rhabdovirus isolated from a single, asymptomatic starry flounder (Platichthys stellatus) collected during a viral survey of marine fishes from the northern portion of Puget Sound, Washington, USA, is reported. Virions were bullet-shaped and approximately 100 nm long and 50 nm wide, contained a lipid envelope, remained stable for at least 14 days at temperatures ranging from -80 to 5 degrees C and grew optimally at 15 degrees C in cultures of epithelioma papulosum cyprini (EPC) cells. The cytopathic effect on EPC cell monolayers was characterized by raised foci containing rounded masses of cells. Pyknotic and dark-staining nuclei that also showed signs of karyorrhexis were observed following haematoxylin and eosin, May-Grunwald Giemsa and acridine orange staining. PAGE of the structural proteins and PCR assays using primers specific for other known fish rhabdoviruses, including Infectious hematopoietic necrosis virus, Viral hemorrhagic septicemia virus, Spring viremia of carp virus, and Hirame rhabdovirus, indicated that the new virus, tentatively termed starry flounder rhabdovirus (SFRV), was previously undescribed in marine fishes from this region. In addition, sequence analysis of 2678 nt of the amino portion of the viral polymerase gene indicated that SFRV was genetically distinct from other members of the family Rhabdoviridae for which sequence data are available. Detection of this virus during a limited viral survey of wild fishes emphasizes the void of knowledge regarding the diversity of viruses that naturally infect marine fish species in the North Pacific Ocean.

Journal of General Virology↗

USGS1961

Structure and stratigraphy of the Pybus-Gambier area, Alaska

The Pybus-Gambier area comprises about 215 square miles of uninhabited land on the southeastern coast of Admiralty Island, southeastern Alaska. The section consists of more than 20,000 feet of intensely folded sedimentary, volcanic, and metamorphic rocks, all probably of marine origin, ranging in age from Silurian(?) to Early Cretaceous, unconformably overlain by more than 10,000 feet of gently dipping nonmarine, coarse-grained sedimentary rocks, and basalt and andesite flows of Eocene age. Diorite plutons and associated contact metamorphic rocks occur in the little-know northwestern part of the area. The section here is subdivided into nine formations, eight of which are named for the first time, as follows: Gambier Bay formation of Middle(?) Devonian age, composed of greenschist, phyllite, marble, and metachert; Hood Bay formation or Silurian and Devonian age, composed of dark, carbonaceous, thin-bedded chert, argillite, limestone, and graywacke; Cannery formation of Permian age, composed of thin-bedded chert, argillite, and graywacke; Pybus dolomite of Permian age, composed of fossiliferous, cherty dolomite; Hyd formation of Late Triassic age, composed of a basal chert breccia, a limestone member, a thin-bedded argillite member, and a spilitic volcanic member; Seymour Canal formation of Late Cretaceous and Early Cretaceous age, composed of argillite, graywacke, and conglomerate; Brothers volcanic of Early Cretaceous age, composed of andesitic flows and breccia; unnamed conglomerate and sandstone of Eocene age, and Admiralty Island volcanics of Eocene age, composed of basaltic and andesitic flows. A marked angular unconformity occurs at the base of the Tertiary section, and unconformities of less angularity occur as follows: at the base of the Cannery formation; at the base of the Hyd formation, and at the base of the Seymour Canal formation. In general, pre-Seymour Canal deformation seems to have been mild, but the intensity of the post-Gambier Bay - pre-Cannery deformation is uncertain. The complex structure of the pre-Tertiary rocks seem to be the product chiefly of the post-Seymour Canal - pre-Eocene formation. The structure of the pre-Tertiary rocks is studied by graphical statistical analysis of the preferred orientation of the planar and linear structural elements. This analysis indicates that the post-Seymour Canal - pre-Eocene deformation consisted chiefly of three episodes of folding, all of which appear to have resulted from sub-horizontal, northeast-southwest compression. The first episode produced isoclinal folds in bedding, and in places associated axial plane foliation, that had north-northwesterly striking axial planes in eastern Pybus-Gambier area, but generally northeasterly striking axial planes west of False Point Pybus. Compression during the second episode deformed the first folds in the west where their axial planes were oriented about parallel to the compression into complex second folds in both bedding and axial plane foliation, having northwesterly striking axial planes. The second folds are absent in the east where the axial planes and limbs of the first folds were oriented about normal to the second compression. The divergence of the axial planes of the first folds in the west from those in the east may have been caused by the crowding of the first folds in the west against the irregular western margin of the geosyncline during the first compression. Northweststriking thrust and reverse faults occur between domains in which the axial planes of the first folds are strongly divergent. The third episode produced kink folds, having axial planes with subvertical dips but widely varying strikes, that are confined to the thinly fissile schists and phyllites of the Gambier Bay formation. The episodes of folding in the Gambier Bay formation are accompanied by metamorphic recrystallization not found in either younger or possibly coeval (Hood Bay formation) pre-Tertiary rocks. If these episodes are contemporaneous with those in nonmetamorphic pre-Tertiary rocks, then the metamorphism dies out both vertically and laterally, and may be part of the regional decrease in metamorphism westward away from the Coast Range batholith, located about 25 miles to the east. The gently dipping Tertiary strata have been broken into fault blocks by subvertical, north-and north-east striking, normal and reverse faults.

Alaska↗

USGS2007

Comparative velocity structure of active Hawaiian volcanoes from 3-D onshore-offshore seismic tomography

We present a 3-D P-wave velocity model of the combined subaerial and submarine portions of the southeastern part of the Island of Hawaii, based on first-arrival seismic tomography of marine airgun shots recorded by the onland seismic network. Our model shows that high-velocity materials (6.5-7.0??km/s) lie beneath Kilauea's summit, Koae fault zone, and the upper Southwest Rift Zone (SWRZ) and upper and middle East Rift Zone (ERZ), indicative of magma cumulates within the volcanic edifice. A separate high-velocity body of 6.5-6.9??km/s within Kilauea's lower ERZ and upper Puna Ridge suggests a distinct body of magma cumulates, possibly connected to the summit magma cumulates at depth. The two cumulate bodies within Kilauea's ERZ may have undergone separate ductile flow seaward, influencing the submarine morphology of Kilauea's south flank. Low velocities (5.0-6.3??km/s) seaward of Kilauea's Hilina fault zone, and along Mauna Loa's seaward facing Kao'iki fault zone, are attributed to thick piles of volcaniclastic sediments deposited on the submarine flanks. Loihi seamount shows high-velocity anomalies beneath the summit and along the rift zones, similar to the interpreted magma cumulates below Mauna Loa and Kilauea volcanoes, and a low-velocity anomaly beneath the oceanic crust, probably indicative of melt within the upper mantle. Around Kilauea's submarine flank, a high-velocity anomaly beneath the outer bench suggests the presence of an ancient seamount that may obstruct outward spreading of the flank. Mauna Loa's southeast flank is also marked by a large, anomalously high-velocity feature (7.0-7.4??km/s), interpreted to define an inactive, buried volcanic rift zone, which might provide a new explanation for the westward migration of Mauna Loa's current SWRZ and the growth of Kilauea's SWRZ. ?? 2007 Elsevier B.V. All rights reserved.

Earth and Planetary Science Letters↗

USGS1989

Geochemical and paleoenvironmental variations across the Cretaceous/Tertiary boundary at Braggs, Alabama

The Cretaceous/Tertiary (K/T) boundary in southern Alabama occurs in a sequence of interbedded shallow-marine limestones and marls deposited during a Late Maastrichtian regression and subsequent Danian transgression. The presence of a diverse assemblage of Cretaceous and Paleocene benthic micro- and macrofossils has allowed detailed examination of paleoenvironmental changes in this shallow-marine setting at the time of the K/T boundary extinctions. Although extensive diagenesis has resulted in the recrystallization and cementation of whole rock carbonate, a few molluscan macrofossils have retained their original calcitic structure. The oxygen isotopic record of these macrofossils shows a gradual cooling of 2–3°C over a 3 m.y. period which began in the late Maastrichtian and continued into the Danian. The characteristic depletion in δ 13 C across the K/T boundary displayed by planktonic microfossils from pelagic sequences is not recorded at Braggs. Major changes in whole rock trace and minor element chemistry reflect the decrease in terrigenous mineral fluxes to this location brought about by the rapid Early Paleocene transgression.

Alabama↗