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USGS2025

Wetter winters, drier summers: Quantifying the change in hydrological response around the Puget Sound area using the wflow_sbm hydrological model and CMIP6 projections

Climate change is expected to impact hydrological regimes worldwide, including the Pacific Northwest of the United States. This study investigates how climate change will affect river discharge in the Puget Sound region of the State of Washington, with a focus on King and Pierce Counties. We simulated river discharge under historical and future conditions using the physically based, spatially distributed wflow_sbm hydrological model, which was calibrated and validated against U.S. Geological Survey discharge records. Future forcing was based on an ensemble of six high-resolution CMIP6 climate models, which were bias corrected using empirical quantile mapping. The results indicate a decrease in summer discharges (5–10%) and an increase in winter discharges (5–10%) across the study region. The high discharges (90th percentile) are projected to increase in winter, and the low discharges are projected to decrease in summer, due to shifts in precipitation regimes, snowpack hydrology, and evapotranspiration. However, variability between individual CMIP6 models often exceeds the magnitude of ensemble mean changes, underscoring substantial uncertainty in climate projections and the importance of including multiple climate models in climate change analysis. Furthermore, model consensus increased with elevation, which could be the result of the higher elevation areas being driven by less diverse hydrological processes. These findings highlight potential challenges for regional water management, ecosystem health, and flood risk mitigation in the Puget Sound region under future climate conditions.

EarthArXiv↗

USGS2016

Estimating natural monthly streamflows in California and the likelihood of anthropogenic modification

Because natural patterns of streamflow are a fundamental property of the health of streams, there is a critical need to quantify the degree to which human activities have modified natural streamflows. A requirement for assessing streamflow modification in a given stream is a reliable estimate of flows expected in the absence of human influences. Although there are many techniques to predict streamflows in specific river basins, there is a lack of approaches for making predictions of natural conditions across large regions and over many decades. In this study conducted by the U.S. Geological Survey, in cooperation with The Nature Conservancy and Trout Unlimited, the primary objective was to develop empirical models that predict natural (that is, unaffected by land use or water management) monthly streamflows from 1950 to 2012 for all stream segments in California. Models were developed using measured streamflow data from the existing network of streams where daily flow monitoring occurs, but where the drainage basins have minimal human influences. Widely available data on monthly weather conditions and the physical attributes of river basins were used as predictor variables. Performance of regional-scale models was comparable to that of published mechanistic models for specific river basins, indicating the models can be reliably used to estimate natural monthly flows in most California streams. A second objective was to develop a model that predicts the likelihood that streams experience modified hydrology. New models were developed to predict modified streamflows at 558 streamflow monitoring sites in California where human activities affect the hydrology, using basin-scale geospatial indicators of land use and water management. Performance of these models was less reliable than that for the natural-flow models, but results indicate the models could be used to provide a simple screening tool for identifying, across the State of California, which streams may be experiencing anthropogenic flow modification.

California↗

USGS2001

Discharge between San Antonio Bay and Aransas Bay, southern Gulf Coast, Texas, May-September 1999

Along the Gulf Coast of Texas, many estuaries and bays are important habitat and nurseries for aquatic life. San Antonio Bay and Aransas Bay, located about 50 and 30 miles northeast, respectively, of Corpus Christi, are two important estuarine nurseries on the southern Gulf Coast of Texas (fig. 1). According to the Texas Parks and Wildlife Department, “Almost 80 percent of the seagrasses [along the Texas Gulf Coast] are located in the Laguna Madre, an estuary that begins just south of Corpus Christi Bay and runs southward 140 miles to South Padre Island. Most of the remaining seagrasses, about 45,000 acres, are located in the heavily traveled San Antonio, Aransas and Corpus Christi Bay areas” (Shook, 2000). Population growth has led to greater demands on water supplies in Texas. The Texas Water Development Board, the Texas Parks and Wildlife Department, and the Texas Natural Resource Conservation Commission have the cooperative task of determining inflows required to maintain the ecological health of the State’s streams, rivers, bays, and estuaries. To determine these inflow requirements, the three agencies collect data and conduct studies on the need for instream flows and freshwater/ saline water inflows to Texas estuaries. To assist in the determination of freshwater inflow requirements, the U.S. Geological Survey (USGS), in cooperation with the Texas Water Development Board, conducted a hydrographic survey of discharge (flow) between San Antonio Bay and Aransas Bay during the period May–September 1999. Automated instrumentation and acoustic technology were used to maximize the amount and quality of data that were collected, while minimizing personnel requirements. This report documents the discharge measured at two sites between the bays during May–September 1999 and describes the influences of meteorologic (wind and tidal) and hydrologic (freshwater inflow) conditions on discharge between the two bays. The movement of water between the bays is controlled primarily by prevailing winds, tidal fluctuations, and freshwater inflows. An adequate understanding of mixing and physical exchange in the estuarine waters is fundamental to the assessment of the physical, chemical, and biological processes governing the aquatic system.

Texas↗

USGS2009

Physical, Chemical, Ecological, and Age Data and Trench Logs from Surficial Deposits at Hatch Point, Southeastern Utah

This report presents data and describes the methodology for physical, chemical and ecological measurements of sediment, soil, and vegetation, as well as age determinations of surficial deposits at Hatch Point, Canyon Rims area, Colorado Plateau, southeastern Utah. The results presented in this report support a study that examines geomorphic and soil factors that may influence boundaries between shrubland and grassland ecosystems in the study area. Shrubland ecosystems dominated by sagebrush (Artemisia tridentata) and grassland ecosystems dominated by native perennial grasses (for example, Hilaria jamesii and Sporabolis sp.) are high-priority conservation targets for the Federal Bureau of Land Management (BLM) and other resource managers because of their diversity, productivity, and vital importance as wildlife habitat. These ecosystems have been recognized as imperiled on a regional scale since at least the mid-1990s due to habitat loss (type conversions), land-use practices, and invasive exotic plants. In the Intermountain West, the exotic annual cheatgrass (Bromus tectorum) is recognized as one of the most pervasive and serious threats to the health of native sagebrush and grassland ecosystems through effects on fire regimes and resource conditions experienced by native species.

Open-File Report↗

USGS2019

Improving ecological restoration to curb biotic invasion - A practical guide

Common practices for invasive species control and management include physical, chemical, and biological approaches. The first two approaches have clear limitations and may lead to unintended (negative) consequences, unless carefully planned and implemented. For example, physical removal rarely completely eradicates the targeted invasive species and can cause disturbances that facilitate new invasions by nonnative species from nearby habitats. Chemical treatments can harm native, and especially rare, species through unanticipated side effects. Biological methods may be classified as biocontrol and the ecological approach. Similar to physical and chemical methods, biocontrol also has limitations and sometimes leads to unintended consequences. Therefore, a relatively safer and more practical choice may be the ecological approach, which has two major components: (1) restoration of native species and (2) biomass manipulation of the restored community, such as selective grazing or prescribed burning (to achieve and maintain viable population sizes). Restoration requires well-planned and implemented planting designs that consider alpha-, beta-, and gamma-diversity and the abundance of native and invasive component species at local, landscape, and regional levels. Given the extensive destruction or degradation of natural habitats around the world, restoration could be most effective for enhancing ecosystem resilience and resistance to biotic invasions. At the same time, ecosystems in human-dominated landscapes, especially those newly restored, require close monitoring and careful intervention (e.g., through biomass manipulation), especially when successional trajectories are not moving as intended. Biomass management frequently uses prescribed burning, grazing, harvesting, and thinning to maintain overall ecosystem health and sustainability. Thus, the resulting optimal, balanced, and relatively stable ecological conditions could more effectively limit the spread and establishment of invasive species. Here we review the literature (especially within the last decade) on ecological approaches that involve biodiversity, biomass, and productivity, three key community/ecosystem variables that reciprocally influence one another. We focus on the common and most feasible ecological practices that can aid in resisting new invasions and/or suppressing the dominance of existing invasive species. We contend that, because of the strong influences from neighboring areas (i.e., as exotic species pools), local restoration and management efforts in the future need to consider the regional context and projected climate changes.

Invasive Plant Science and Management↗

USGS2007

Southern California Bight 2003 Regional Monitoring Program: V. water quality

More than $30 million is expended annually on environmental monitoring in the Southern California Bight (SCB), yet only 5% of the Bight is monitored on an ongoing basis. Therefore, environmental managers in the SCB decided to expand their monitoring program and, starting in 1994, decided to conduct periodic regional assessments of ecosystem condition and assess the overall health of the SCB. Sixty-five different organizations collaborated in 2003 to create the third SCB Regional Monitoring Program (Bight '03). Bight '03 was designed to be integrated regional monitoring program that encompasses regulatory, academic, and non-governmental agencies. Bight '03 had three components: Coastal Ecology, Shoreline Microbiology, and Water Quality. This report addresses the purpose, approach, findings, and recommendations from the Water Quality component, which focused on contamination-laden stormwater runoff, in particularly its variability in time and space as well as its short-term ecological impacts. Specifically, the Bight '03 Water Quality component had three primary goals, the first of which was to described the temporal evolution of stormwater plumes produced by the major southern California rivers. Specifically, the study was intended to determine how far offshore the plumes extended, how rapidly they advected, how long before the plumes dispersed and how these properties differed among storms and river systems. The second goal was to describe how the physical properties (e.g., turbidity, temperature, salinity) of the plume related to biogeochemical and ecological properties that are of more direct concern to the water quality management community. Accomplished primarily through ship-based sampling of water quality parameters, this second goal was to describe how far offshore, and for how ;long after the storm, elevated bacterial concentrations, toxicity, and nutrients could be detected. Similar to the fist goal, the study also addressed how these answers differed among storms and river systems. The final goal was to determine whether relationships between environmental indicators derived from coincident satellite remote sensing and in situ data sets are sufficiently robust for remote sensing to become a routine water quality monitoring programs. Remote sensing data potentially provide coastal managers with synoptic near-real time regional information about prevailing ocean conditions and hazards that would complement existing field-based sampling protocols, but only if there is a thorough understanding of how to interpret and utilize the proxy measures, such as ocean color. The understanding of these priorities through Bight '03 sampling is intended to provide the basis for developing more efficient, widespread and coast-effective coastal ocean monitoring techniques. Water quality data were collected across eight major river systems within four geographic regions of southern California. Field measurements included the primary contaminants of interest, i.e., bacterial concentrations, water toxicity, and nutrients, as well as related parameters such as temperatures, salinity, total suspended solids, transmissivity, chlorophyll, and colored dissolved organic material (CDOM) concentrations. For each of the four major regions, i.e., Santa Clara/Ventura Rivers, Ballona Creek/Santa Monica Bay, San Pedro Shelf, and the San Diego, Tijuana Rivers, two stormwater events were sampled for up to three days by ship resulting in 574 water column CTD+ profiles and 705 discrete water samples during 36 ship-days. These data were analyzed in combination with MODIS ocean color satellite remote sensing, buoy meteorological observations, drifters, and HF radar current measurements to evaluate the dispersal patterns, dynamics, and impacts of the freshwater runoff plumes. Based on these data and resulting analyses, the principal conclusions were as follow: - Stormwater runoff turbidity plumes were found to be spatially extensive, covering up to 2500 km 2 within the Southern California Bight nearshore zone, and persisting over the entire duration of the post-storm sampling period (at least 3 days). - The spatial and temporal extent of the portion of the plume with contaminants was far less than that of the turbidity plume, typically representing <10% of its area (30-70% off Tijuana); however, with contaminant impacts generally greatly reduced or absent by the third or fourth day of sampling - Pseudo-nitzschia , a harmful algae that produces domoic acid, was found to be more abundant than previously reported. - Accurately describing stormwater runoff plumes requires a combination of in situ and remote sensing assessment tools, with satellite data providing valuable synoptic information. From these conclusions, the following recommendations are provided: - Future studies designed to describe stormwater plumes should include a combination of ship - and remote sensing-based methods. - CDOM is a good proxy of the freshwater runoff plume and should be added as a standard measurement parameter on water quality instrument packages. - Investigations are needed that assess on a local basis the spatial extent of ecological effects of stormwater plumes early in the storm, ideally accompanied by airborne imagery to provide improved temporal & spatial resolution, to fill in knowledge gaps. The next Bight regional monitoring program should focus on quantifying nutrient loadings and dynamics in association with stormwater runoff and other sources, and characterize their attendant ecosystem impacts such as phytoplankton blooms.

California↗

USGS2023

Per- and polyfluorinated alkyl substances (PFAS) in Pennsylvania surface waters: A statewide assessment, associated sources, and land-use relations

The objectives of this study are to identify per- and polyfluoroalkyl substances (PFAS) in Pennsylvania surface waters, corresponding associations with potential sources of PFAS contamination (PSOC) and other parameters, and compare raw surface water concentrations to human and ecological benchmarks. Surface water samples from 161 streams were collected in September 2019 and were analyzed for 33 target PFAS and water chemistry. Land use and physical attributes in upstream catchments and geospatial counts of PSOC in local catchments are summarized. The hydrologic yield of the sum of 33 PFAS (∑PFAS) for each stream was computed by normalizing each site's load by the drainage area of the upstream catchment. Utilizing conditional inference tree analysis, the percentage of development (>7.58 %) was identified as a primary driver of the ∑PFAS hydrologic yields. When percentage of development was removed from analysis, ∑PFAS yields were closely related to surface water chemistry associated with landscape alteration (e.g., development or agricultural cropland), such as concentrations of total nitrogen, chloride, and ammonia, but also to count of water pollution control facilities (agricultural, industrial, stormwater, and/or municipal waste pollution abatement facilities). In oil and gas development regions, ∑PFAS yields were associated with combined sewage outfalls. Sites surrounded by ≥2 electronic manufacturing facilities had elevated ∑PFAS yields (median = 241 ng/s/km 2 ). Study results are critical to guide future research, regulatory policy, best practices that will mitigate PFAS contamination, and the communication of human health and ecological risks associated with PFAS exposure from surface waters.

Pennsylvania↗

USGS2014

Status and understanding of groundwater quality in the South Coast Interior groundwater basins, 2008: California GAMA Priority Basin Project

Groundwater quality in the approximately 653-square-mile (1,691-square-kilometer) South Coast Interior Basins (SCI) study unit was investigated as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The South Coast Interior Basins study unit contains eight priority groundwater basins grouped into three study areas, Livermore, Gilroy, and Cuyama, in the Southern Coast Ranges hydrogeologic province. The GAMA Priority Basin Project is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey (USGS) and the Lawrence Livermore National Laboratory. The GAMA South Coast Interior Basins study was designed to provide a spatially unbiased assessment of untreated (raw) groundwater quality within the primary aquifer system, as well as a statistically consistent basis for comparing water quality between basins. The assessment was based on water-quality and ancillary data collected by the USGS from 50 wells in 2008 and on water-quality data from the California Department of Public Health (CDPH) database. The primary aquifer system was defined by the depth intervals of the wells listed in the CDPH database for the SCI study unit. The quality of groundwater in the primary aquifer system may be different from that in the shallower or deeper water-bearing zones; shallow groundwater may be more vulnerable to surficial contamination. The first component of this study, the status of the current quality of the groundwater resource, was assessed by using data from samples analyzed for volatile organic compounds (VOCs), pesticides, and naturally occurring inorganic constituents, such as trace elements and minor ions. This status assessment is intended to characterize the quality of groundwater resources within the primary aquifer system of the SCI study unit, not the treated drinking water delivered to consumers by water purveyors. Relative-concentrations (sample concentration divided by the health- or aesthetic-based benchmark concentration) were used for evaluating groundwater quality for those constituents that have Federal or California regulatory or non-regulatory benchmarks for drinking-water quality. A relative-concentration greater than 1.0 indicates a concentration greater than a benchmark, and a relative-concentration less than or equal to 1.0 indicates a concentration equal to or less than a benchmark. Relative-concentrations of organic constituents and special-interest constituents were classified as “high” (relative-concentration greater than 1.0), “moderate” (relative-concentration greater than 0.1 and less than or equal to 1.0), or “low” (relative-concentration less than or equal to 0.1). Relative-concentrations of inorganic constituents were classified as “high” (relative-concentration greater than 1.0), “moderate” (relative-concentration greater than 0.5 and less than or equal to 1.0), or “low” (relative-concentration less than or equal to 0.5). Aquifer-scale proportion was used as the primary metric in the status assessment for evaluating regional-scale groundwater quality. High aquifer-scale proportion is defined as the percentage of the area of the primary aquifer system with a relative-concentration greater than 1.0 for a particular constituent or class of constituents; percentage is based on an areal rather than a volumetric basis. Moderate and low aquifer-scale proportions were defined as the areal percentage of the primary aquifer system with moderate and low relative-concentrations, respectively. Two statistical approaches—grid-based and spatially weighted—were used to evaluate aquifer-scale proportions for individual constituents and classes of constituents. Grid-based and spatially weighted estimates were comparable in the SCI study unit (within 90-percent confidence intervals). Inorganic constituents (one or more) with health-based benchmarks were detected at high relative-concentrations in 29 percent of the primary aquifer system, at moderate relative-concentrations in 37 percent, and at low relative-concentrations in 34 percent. High aquifer-scale proportions of inorganic constituents primarily reflected high aquifer-scale proportions of nitrate (14 percent), boron (8.6 percent), molybdenum (8.6 percent), and arsenic (5.7 percent). In contrast, the relative-concentrations of organic constituents (one or more) were high in 1.6 percent, moderate in 2.0 percent, and low or not detected in 96 percent of the primary aquifer system. Of the 207 organic and special-interest constituents analyzed for, 15 constituents were detected. Perchlorate was found at moderate relative-concentrations in 34 percent of the aquifer. Two organic constituents were frequently detected (in greater than 10 percent of samples): the trihalomethane chloroform and the herbicide simazine. The second component of this study, the understanding assessment, identified natural and human factors that may have affected groundwater quality by evaluating land use, physical characteristics of the wells, and geochemical conditions of the aquifer. This evaluation was done by using statistical tests of correlations between these potential explanatory factors and water-quality data. Concentrations of arsenic, molybdenum, and manganese were generally greater in anoxic and pre-modern groundwater than other groundwater. In contrast, concentrations of nitrate and perchlorate were significantly higher in oxic and modern groundwater. Concentrations of simazine were greater in modern than pre-modern groundwater. Chloroform detections were positively correlated with greater urban land use. Boron concentrations and chloroform detections were higher in the Livermore study area than in the other study areas of the SCI; total dissolved solids and sulfate concentrations were greater in the Cuyama study area.

California↗

USGS2018

Future southcentral US wildfire probability due to climate change

Globally, changing fire regimes due to climate is one of the greatest threats to ecosystems and society. In this paper, we present projections of future fire probability for the southcentral USA using downscaled climate projections and the Physical Chemistry Fire Frequency Model (PC2FM). Future fire probability is projected to both increase and decrease across the study region of Oklahoma, New Mexico, and Texas. Among all end-of-century projections, change in fire probabilities (CFPs) range from − 51 to + 240%. Greatest absolute increases in fire probability are shown for areas within the range of approximately 75 to 160 cm mean annual precipitation (MAP), regardless of climate model. Although fire is likely to become more frequent across the southcentral USA, spatial patterns may remain similar unless significant increases in precipitation occur, whereby more extensive areas with increased fire probability are predicted. Perhaps one of the most important results is illumination of climate changes where fire probability response (+, −) may deviate (i.e., tipping points). Fire regimes of southcentral US ecosystems occur in a geographic transition zone from reactant- to reaction-limited conditions, potentially making them uniquely responsive to different scenarios of temperature and precipitation changes. Identification and description of these conditions may help anticipate fire regime changes that will affect human health, agriculture, species conservation, and nutrient and water cycling.

Climate Change↗

USGS1997

Effects of urbanization on water quality in the Kansas River, Shunganunga Creek Basin, and Soldier Creek, Topeka, Kansas, October 1993 through September 1995

A study of urban-related water-qulity effects in the Kansas River, Shunganunga Creek Basin, and Soldier Creek in Topeka, Kansas, was conducted from October 1993 through September 1995. The purpose of this report is to assess the effects of urbanization on instream concentrations of selected physical and chemical constituents within the city of Topeka. A network of seven sampling sites was established in the study area. Samples principally were collected at monthly intervals from the Kansas River and from the Shunganunga Creek Basin, and at quarterly intervals from Soldier Creek. The effects of urbanization werestatistically evaluated from differences in constituent concentrations between sites on the same stream. No significant differences in median concentrations of dissolved solids, nutrients, or metals and trace elements, or median densities offecal bacteria were documented between sampling sites upstream and downstream from the major urbanized length of the Kansas River in Topeka.Discharge from the city's primary wastewater- treatment plant is the largest potential source of contamination to the Kansas River. This discharge increased concentrations of dissolved ammonia, totalphosphorus, and densities of fecal bacteria.Calculated dissolved ammonia as nitrogen concentrations in water from the Kansas River ranged from 0.03 to 1.1 milligrams per liter after receiving treatment-plant discharge. However, most of the calculated concentrations wereconsiderably less than 50 percent of Kansas Department of Health and Environment water- quality criteria, with a median value of 20 percent.Generally, treatment-plant discharge increased calculated total phosphorus concentrations in water from the Kansas River by 0.01 to 0.04 milligrams per liter, with a median percentage increase of 7.6 percent. The calculated median densities of fecal coliform and fecal Streptococci bacteria in water from the Kansas River increased from 120 and 150colonies per 100 milliliters of water, respectively, before treatment-plant discharge to a calculated 4,900 and 4,700 colonies per 100 milliliters of water, respectively, after discharge. Median concentrations of dissolved solids were not significantly different between three sampling sites in the Shunganunga Creek Basin. Median concentrations of dissolved nitrate as nitrogen, total phosphorus, and dissolved orthophosphate were significantly larger in water from the upstream- most Shunganunga Creek sampling site than in water from either of the other sampling sites in the Shunganunga Creek Basin probably because of the site's proximity to a wastewater-treatment plant.Median concentrations of dissolved nitrate as nitrogen and total phosphorus during 1993-95 at upstream sampling sites were either significantlylarger than during 1979-81 in response to increase of wastewater-treatment plant discharge or smaller because of the elimination of wastewater-treatment plant discharge. Median concentrations of dissolved ammonia as nitrogen were significantly less during 1993-95 than during 1979-81. Median concentrations of total aluminum, iron, maganese, and molybdenum were significantly larger in water from the downstream-mostShunganunga Creek sampling site than in water from the upstream-most sampling site. This probably reflects their widespread use in the urbanenvironment between the upstream and downstream Shunganunga Creek sampling sites. Little water-quality effect from the urbanization was indicated by results from the Soldier Creek sampling site. Median concentrations of most water-quality constituents in water from this sampling site were the smallest in water from any sampling site in the study area. Herbicides were detected in water from all sampling sites. Some of the more frequently detected herbicides included acetochlor, alachlor,atrazine, cyanazine, EPTC, metolachlor, prometon, simazine, and tebuthiuron. Detected insecticides including chlordane,

Water-Resources Investigations Report↗

USGS2008

Assessment of Water-Quality Conditions in Fivemile Creek in the Vicinity of the Fivemile Creek Greenway, Jefferson County, Alabama, 2003-2005

The watershed of Fivemile Creek (FMC), a tributary to the Locust Fork of the Black Warrior River, is located north of Birmingham, Alabama. Areas that have been previously coal-mined border the creek, and portions of the upper watershed have been and are currently (2007) being used for industrial and urban uses. The U.S. Geological Survey (USGS), in cooperation with the City of Tarrant, the Freshwater Land Trust, and the Jefferson County Commission, conducted a water-quality assessment of 12 sites along FMC during 2003?2005. Water samples were analyzed for basic physical and chemical properties and concentrations of major ions, nutrients, fecal indicator bacteria, organic wastewater compounds, pesticides, trace elements, and semivolatile organic compounds. Streambed-sediment samples were analyzed for concentrations of trace elements and semivolatile organic compounds. Benthic invertebrate communities were evaluated for taxonomic composition and relation to water-quality conditions. Nutrient concentrations in the FMC watershed reflect the influences of natural and anthropogenic sources. Concentrations of total nitrogen in all samples and total Kjeldahl nitrogen in at least one sample each collected from FMC at Hewitt Park, FMC below Springdale Road, FMC at Lewisburg, FMC near Republic, FMC at Brookside, and FMC at Linn Crossing exceeded U.S. Environmental Protection Agency (USEPA) ecoregion nutrient criteria. Total phosphorus concentrations in about 58 percent of all samples were above the ecoregion nutrient criteria. Concentrations of chlorophyll a, an indicator of algal biomass, in the FMC watershed were below the appropriate USEPA ecoregion criteria. Fecal indicator bacteria concentrations occasionally exceeded criteria established by the Alabama Department of Environmental Management (ADEM) and the USEPA to protect human health and aquatic life. Median fecal-coliform concentrations equaled or exceeded USEPA criteria at four of the six sites with multiple samples. Maximum Escherichia coli (E. coli) concentrations usually occurred during high-flow conditions and exceeded the single-sample criterion for infrequently-used whole-body contact (576 colonies per 100 milliliters) at all but one site. Median E. coli concentrations for two of the seven sites with multiple samples exceeded USEPA criteria. Twenty-nine samples were collected from sites along FMC and analyzed by the USGS National Water Quality Laboratory for the presence of 57 organic wastewater compounds. Forty-six of the 57 organic wastewater compounds, representing all 11 general-use categories, were detected in samples from FMC. All detections of organic wastewater compounds were estimated below laboratory reporting limits except for several detections of the herbicide bromacil. Herbicides accounted for approximately 62 percent of the number of pesticide detections in the FMC study area. Two herbicides, atrazine and simazine, were detected most frequently, in 100 percent of the surface-water samples. Fipronil sulfide was the most commonly detected insecticide-derived compound, occurring in 52 percent of the surface-water samples. Concentrations of one insecticide, dieldrin, exceeded the USEPA?s health advisory level for drinking water in one sample at FMC at Hewitt Park and in one sample at FMC below Springdale Road. Concentrations of carbaryl in two samples and malathion in one sample exceeded aquatic-life criteria. Only a few trace element concentrations measured in FMC exceeded established standards or criteria. Some concentrations of aluminum and manganese were above secondary drinking-water standards. One cadmium concentration and three selenium concentrations measured at FMC at Lewisburg exceeded ADEM chronic aquatic-life criteria. Streambed-sediment samples were collected at seven sites along FMC, and analyzed for selected semivolatile organic compounds and trace elements. Forty-nine of 98 semivolatile organic compounds were detected in stre

Scientific Investigations Report↗

USGS2026

A method to implement natural flow regimes for regulated rivers

Rivers throughout the world have been dammed for flood control, irrigation, hydropower, and water storage for centuries. Dams service the economic and development needs of societies, but degrade the ecology of rivers. To conserve diminishing aquatic species and their habitats, methods are needed to help managers implement flow releases with timescales and patterns that are relevant to aquatic species and physical processes. We present a method to synchronize flow releases from dams with local hydrology, while ensuring constraints of flood control and water allocations are met. We demonstrate an optimization technique that scales flows of a proximal unregulated river and results in discharges that are synchronized with natural hydrologic patterns. Importantly, our method preserves operational and regulatory requirements such as water allocation volumes and flood control thresholds. This technique can be used at various timescales, and can incorporate many system-specific constraints. We selected the Trinity River, California as an example, and scale flows according to a proximal gage on the Salmon River in California. We evaluate our technique using an array of flow regime metrics from the literature, and our method produced hydrographs with greater flow variation throughout a larger portion of the water year than current management strategies. These hydrographs yielded flow metrics more similar to those from unimpaired flow patterns, including those measuring within and among year flow variability. The Real Time Management framework is a new tool that can be implemented to improve the health of rivers and the aquatic species that depend upon them.

California↗

USGS2021

Spatial and temporal dynamics of phytoplankton assemblages in the upper Mississippi River

Phytoplankton provide large quantities of organic carbon and biomolecules that support large river ecosystems. However, when certain groups become overabundant (e.g., cyanobacteria), they can pose a risk to human health and river biota. The purpose of this study was to examine the spatial and temporal dynamics of phytoplankton community composition within the upper Mississippi River. More specifically, we analyzed samples from main channel, impounded, and backwater areas of Navigation Pools 8 and 13 to examine lateral variability within each of these pools. We analyzed samples from the main channel of Pool 26 to examine longitudinal variation among Pools 8, 13, and 26. Phytoplankton and water quality samples were collected during the summer months of 2006–2009. The main channels of Pool 8 and Pool 13 were generally dominated by diatoms, although cyanobacteria were (at times) more abundant. The backwaters were generally dominated by cyanobacteria and typified by flagellated species (e.g., cryptomonads and euglenoids). The main channel of Pool 26 was always dominated by diatoms. Discharge influenced phytoplankton community composition. In Pool 26, taxonomic richness tended to increase with increasing discharge. There were no linear correlations between cyanobacteria total or proportional biovolume and nutrient concentrations, indicating that nutrient limitation was not common. Differences in phytoplankton communities were generally associated with physical factors such as discharge, turbidity, and residence time.

River Research and Applications↗

USGS2005

The Colorado Plateau II: biophysical, socioeconomic, and cultural research

The publication of The Colorado Plateau: Cultural, Biological, and Physical Research in 2004 marked a timely summation of current research in the Four Corners states. This new volume, derived from the seventh Biennial Conference on the Colorado Plateau in 2003, complements the previous book by focusing on the integration of science into resource management issues. The 32 chapters range in content from measuring human impacts on cultural resources, through grazing and the wildland-urban interface issues, to parameters of climate change on the Plateau. The book also introduces economic perspectives by considering shifting patterns and regional disparities in the Colorado Plateau economy. A series of chapters on mountain lions explores the human-wildland interface. These chapters deal with the entire spectrum of challenges associated with managing this large mammal species in Arizona and on the Colorado Plateau, conveying a wealth of timely information of interest to wildlife managers and enthusiasts. Another provocative set of chapters on biophysical resources explores the management of forest restoration, from the micro scale all the way up to large-scale GIS analyses of ponderosa pine ecosystems on the Colorado Plateau. Given recent concerns for forest health in the wake of fires, severe drought, and bark-beetle infestation, these chapters will prove enlightening for forest service, park service, and land management professionals at both the federal and state level, as well as general readers interested in how forest management practices will ultimately affect their recreation activities. With broad coverage that touches on topics as diverse as movement patterns of rattlesnakes, calculating watersheds, and rescuing looted rockshelters, this volume stands as a compendium of cutting-edge research on the Colorado Plateau that offers a wealth of insights for many scholars.

Utah;Colorado;Arizona;New Mexico↗

USGS2025

Designs for cyanobacterial harmful algal bloom monitoring in the Sacramento–San Joaquin Delta, California

Cyanobacterial harmful algal blooms (CHABs) are a growing concern in freshwater environments. These blooms can lead to degraded water quality, ecosystem disruptions, and public health threats due to the production of potent cyanotoxins. The Sacramento–San Joaquin Delta (California, USA; the Delta) has experienced CHABs since 1999, including CHABs that produce cyanotoxins at concentrations exceeding recreational advisory threshold levels. In response to the CHAB monitoring needs in the Delta, in 2024 a CHAB monitoring strategy for the Sacramento–San Joaquin Delta was released. The CHAB monitoring strategy recommended implementing a comprehensive monitoring program aligned with regional priorities, and this report responds directly to that recommendation. Building on the CHAB monitoring strategy, it describes three example monitoring designs that draw from past studies to address present needs. To develop designs, the report outlines key components and considerations for implementing a CHAB monitoring program in the Delta. It provides: background on monitoring and modeling approaches, an overview of current monitoring programs in the region, guidance for selecting monitoring locations, indicators, and sampling frequencies, and example designs to guide program planning and budgeting. The overarching goal of the report is to help agencies and stakeholders move from high-level recommendations to practical, actionable designs that are tailored to the Delta’s physical, anthropogenic, and ecological landscape.

ESS Open Archive↗

USGS2020

Human behavioral response in the Ridgecrest earthquakes: Assessing immediate actions based on data from “Did You Feel It?”

Human behavioral response to earthquake ground motion has long been a subject of multidisciplinary interest and research. In most versions of seismic intensity scales, human perceptions and behavior are one component of the assignment of intensity. Public health research has shown that actions taken during earthquakes have a significant impact on the incidence of injury or the maintenance of safety. Based on this research, emergency managers and organizations promoting emergency preparedness have advocated strategies such as drop, cover, and hold on (DCHO) and promoted this safety measure through public education and annual drills. The “Did You Feel It?” (DYFI) mapping system (see Data and Resources) based on an online questionnaire developed and maintained by the U.S. Geological Survey has provided opportunities for those who have experienced an earthquake to report this experience worldwide since 2004. The DYFI questionnaire, although designed to assign intensity, also contains questions regarding the behavior in which one has engaged during the earthquake. The questionnaire includes other important information that may elucidate behavioral response to earthquakes, including assigned intensity, emotional reaction, and whether damage occurred at the location where the earthquake was experienced. The very large number of people who completed DYFI questionnaires following the July 2019 Ridgecrest, California, earthquakes provides a robust dataset for analysis and suggests that as intensity and levels of fear increase, behavior becomes more active in terms of physical movement to locations of presumed safety. Among active responses including DCHO, going to a doorway, and running outside, DCHO was the least likely to be implemented. The study provides possible explanations for low participation in DCHO despite active campaigns to promote this strategy.

California↗

USGS2013

Groundwater quality in the Madera and Chowchilla subbasins of the San Joaquin Valley, California

Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project of the GAMA Program provides a comprehensive assessment of the State’s untreated groundwater quality and increases public access to groundwater-quality information. The Madera and Chowchilla subbasins of the San Joaquin Valley constitute one of the study units being evaluated. The Madera-Chowchilla study unit is about 860 square miles and consists of the Madera and Chowchilla groundwater subbasins of the San Joaquin Valley Basin (California Department of Water Resources, 2003; Shelton and others, 2009). The study unit has hot, dry summers and cool, moist winters. Average annual rainfall ranges from 11 to 15 inches, most of which occurs between November and February. The main surface-water features in the study unit are the San Joaquin, Fresno, and Chowchilla Rivers, and the Madera and Chowchilla canals. Land use in the study unit is about 69 percent (%) agricultural, 28% natural (mainly grasslands), and 3% urban. The primary crops are orchards and vineyards. The largest urban area is the city of Madera. The primary aquifer system is defined as those parts of the aquifer corresponding to the perforated intervals of wells listed in the California Department of Public Health (CDPH) database. In the Madera-Chowchilla study unit, these wells typically are drilled to depths between 200 and 800 feet, consist of a solid casing from land surface to a depth of about 140 to 400 feet, and are perforated below the solid casing. Water quality in the primary aquifer system may differ from that in the shallower and deeper parts of the aquifer system. The primary aquifer system in the study unit consists of Quaternary-age alluvial-fan and fluvial deposits that were formed by the rivers draining the Sierra Nevada. Sediments consist of gravels, sands, silts, and clays and generally are coarser closest to the Sierra Nevada and become finer towards the center of the basin. The structure and composition of the deposits in the Madera-Chowchilla study unit are different from those in other parts of the eastern San Joaquin Valley because the Fresno and Chowchilla Rivers primarily drain the Sierra Nevada foothills, whereas the larger rivers drain higher elevations with greater sediment supply. These differences in the sources of sediments are important because they may affect the groundwater chemistry and the physical structure of the sedimentary deposits. Some of the clay layers are lacustrine deposits, the most extensive of which, the Corcoran Clay, underlies the western part of the study unit and divides the primary aquifer system into an unconfined to semi-confined upper system and a largely confined lower system. Regional lateral flow of groundwater is southwest towards the valley trough. Irrigation return flows are the major source of groundwater recharge, and groundwater pumping is the major source of discharge. Groundwater on a lateral flow path may be repeatedly extracted by pumping wells and reapplied at the surface multiple times before reaching the valley trough, resulting in a substantial component of downward vertical flow (Burow and others, 2004; Phillips and others, 2007; Faunt, 2009). This flow pattern enhances movement of water from shallow depths to the primary aquifer system.

California↗

USGS2023

Mussel mass mortality in the Clinch River, USA: Metabolomics detects affected pathways and biomarkers of stress

Biologists monitoring freshwater mussel (order Unionida) populations rely on behavioral, often subjective, signs to identify moribund (“sick”) or stressed mussels, such as gaping valves and slow response to probing, and they lack clinical indicators to support a diagnosis. As part of a multi-year study to investigate causes of reoccurring mortality of pheasantshell ( Ortmanniana pectorosa; synonym Actinonaias pectorosa ) in the Clinch River, Virginia and Tennessee, USA, we analyzed the hemolymph metabolome of a subset of mussels from the 2018 sampling period. Mussels at the mortality sites were diagnosed in the field as affected (case) or unaffected (control) based on behavioral and physical signs. Hemolymph was collected in the field by non-lethal methods from the anterior adductor muscle for analysis. We used ultra-high-performance liquid chromatography with quadrupole time-of-flight mass spectroscopy to detect targeted and untargeted metabolites in hemolymph and compared metabolomic profiles by field assessment of clinical status. Targeted biomarker analysis found 13 metabolites associated with field assessments of clinical status. Of these, increased gamma-linolenic acid and N -methyl- L -alanine were most indicative of case mussels, while adenine and inosine were the best indicators of control mussels. Five pathways in the targeted analysis differed by clinical status; two of these, purine metabolism and glycerophospholipid metabolism, were also indicated in the untargeted analysis. In the untargeted nalysis, 22 metabolic pathways were associated with clinical status. Many of the impacted pathways in the case group were catabolic processes, such as degradation of amino acids and fatty acids. Hierarchical clustering analysis matched clinical status in 72% (18 of 25) of mussels, with control mussels more frequently (5 of 16) not matching clinical status. Our study demonstrated that metabolomic analysis of hemolymph is suitable for assessing mussel condition and complements field-based indicators of health.

Tennessee, Virginia↗