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USGS1994

Diurnal raptors in the fragmented rain forest of the Sierra Imataca, Venezuela

The rain forest of the Sierra Imataca in eastern Venezuela has been subjected to extensive deforestation for pastures and agricultural settlements. In the last decade the opening of access roads combined with intensified logging and mining activities have fragmented a significant portion of the remaining forest. We noted local distribution and habitat use for 40 species of diurnal raptors observed in ten affected areas, including raptors considered as forest interior species and some open country species utilizing the man-made openings inside the forest for roosting and foraging.

Journal of Raptor Research↗

USGS2017

Scientific monitoring plan in support of the selected alternative of the Glen Canyon Dam Long-Term Experimental and Management Plan

Introduction The purpose of this document is to describe a strategy by which monitoring and research data in the natural and social sciences will be collected, analyzed, and provided to the U.S. Department of the Interior (DOI), its bureaus, and to the Glen Canyon Dam Adaptive Management Program (GCDAMP) in support of implementation of the Glen Canyon Dam Long-Term Experimental and Management Plan (LTEMP) (U.S. Department of the Interior, 2016a). The selected alternative identified in the LTEMP Record of Decision (ROD) (U.S. Department of the Interior, 2016b) describes various data collection, analysis, modeling, and interpretation efforts to be conducted by the U.S. Geological Survey’s (USGS) Grand Canyon Monitoring and Research Center (GCMRC), partner agencies, and cooperators that will inform decisions about operations of Glen Canyon Dam and management of downstream resources between 2017 and 2037, the performance period of the LTEMP. General data collection, analysis, modeling, and interpretation activities are described in this science plan, whereas specific monitoring and research activities and detailed study plans are to be described in the GCDAMP’s triennial work plans (TWPs) to be developed by the Bureau of Reclamation and GCMRC with input from partner agencies and cooperators during the LTEMP period, which are to be reviewed and recommended by the GCDAMP and approved by the Secretary of the Interior. The GCDAMP consists of several components, the primary committee being the Adaptive Management Work Group (AMWG). This Federal advisory committee is composed of 25 agencies and stakeholder groups and is chaired by the Secretary of the Interior’s designee. The AMWG makes recommendations to the Secretary of the Interior concerning operations of Glen Canyon Dam and other experimental management actions that are intended to fulfill some obligations of the Grand Canyon Protection Act of 1992. The Technical Work Group (TWG) is a subcommittee of the AMWG and provides technical advice to the AMWG. It is composed of technical and science representatives from the same agencies and stakeholder groups who serve on the AMWG. GCMRC is the primary science provider to the GCDAMP and also coordinates many aspects of the science performed by cooperators and partner agencies. The Science Advisors Program provides independent science reviews and advice at the request of the GCDAMP. The plan proposed here necessarily depends on (1) the protocol for decision-making and the requirements for scientific data reporting described in the LTEMP ROD, (2) the priorities of the GCDAMP as directed by the LTEMP ROD (see Department of the Interior, 2016b, section 6.1), (3) the priorities for monitoring and research in the conservation measures section of the Biological Opinion for the LTEMP (U.S. Department of the Interior, 2016b, LTEMP ROD attachment E), (4) the priorities for resource management and information needs established by Federal and State resource-management agencies within the GCDAMP, (5) scientific understanding about the linkage between the status of those resources and operations of Glen Canyon Dam, and (6) the need to resolve existing scientific uncertainties about the linkage between dam operations and the condition of resources. We note that resource-management prioritization is fundamentally a policy decision charged specifically to DOI for the Colorado River in Glen and Grand Canyons, as outlined most recently in the LTEMP ROD, and is not the responsibility of the GCMRC. However, it is the responsibility of the GCMRC to describe the nature of scientific understanding, the nature of scientific uncertainty, and the risk of making resourcemanagement decisions in the face of existing scientific uncertainty. The goals of science activities in the next 20 years are to inform operational decisions regarding Glen Canyon Dam operations described in the LTEMP ROD, resolve remaining scientific uncertainties, and to monitor resource trends that are affected entirely, or in part, by dam operations.

Open-File Report↗

USGS2016

Nutrient dynamics of the Delta: Effects on primary producers

Increasing clarity of Delta waters, the emergence of harmful algal blooms, the proliferation of aquatic water weeds, and the altered food web of the Delta have brought nutrient dynamics to the forefront. This paper focuses on the sources of nutrients, the transformation and uptake of nutrients, and the links of nutrients to primary producers. The largest loads of nutrients to the Delta come from the Sacramento River with the San Joaquin River seasonally important, especially in the summer. Nutrient concentrations reflect riverine inputs in winter and internal biological processes during periods of lower flow with internal nitrogen losses within the Delta estimated at approximately 30% annually. Light regime, grazing pressure, and nutrient availability influence rates of primary production at different times and locations within the Delta. The roles of the chemical form of dissolved inorganic nitrogen in growth rates of primary producers in the Delta and the structure of the open-water algal community are currently topics of much interest and considerable debate. Harmful algal blooms have been noted since the late 1990s, and the extent of invasive aquatic macrophytes (both submerged and free-floating forms) has increased especially during years of drought. Elevated nutrient loads must be considered in terms of their ability to support this excess biomass. Modern sensor technology and networks are now deployed that make high-frequency measurements of nitrate, ammonium, and phosphate. Data from such instruments allow a much more detailed assessment of the spatial and temporal dynamics of nutrients. Four fruitful directions for future research include utilizing continuous sensor data to estimate rates of primary production and ecosystem respiration, linking hydrodynamic models of the Delta with the transport and fate of dissolved nutrients, studying nutrient dynamics in various habitat types, and exploring the use of stable isotopes to trace the movement and fate of effluent-derived nutrients.

California↗

USGS2016

A simple rubric for Stratigraphic Fidelity (β) of paleoenvironmental time series

The Pliocene, specifically the late Pliocene, has been a focus of paleoclimate research formore than 25 years. Synoptic regional and global reconstructions along with high-resolution time-series have produced nuanced conceptual models of paleoenvironmental conditions and enhanced our understanding of climate variability and climate sensitivity from the Late Pliocene, the most recent interval of global warmth similar to what is projected for the end of the 21st century. These data are used as a source of boundary conditions for climate models as well as ameans of verification of global climate model experiments. In this note, we introduce a measure of stratigraphic fidelity, ß, used to characterize the chronology and achievable resolution of an ever-growing library of Pliocene paleoenvironmental time-series. The ß index serves as an aid to end-users by allowing selection of time-series that meet the stratigraphic requirements of a particular study.

Stratigraphy↗

USGS1973

Notes on the bromine pentafluoride technique of oxygen extraction

The necessity to use a dry box when loading silicate samples into reaction vessels prior to fluorination is eliminated by the use of a simple loading technique. Data presented show the reproducibility of the fluorination reaction using this technique. Sodium fluoride, when added to saline waters prior to fluorination, improves the precision of the overall technique.

Journal of Research of the U.S. Geological Survey↗

USGS2010

New insight into lunar impact melt mobility from the LRO camera

The Lunar Reconnaissance Orbiter Camera (LROC) is systematically imaging impact melt deposits in and around lunar craters at meter and sub-meter scales. These images reveal that lunar impact melts, although morphologically similar to terrestrial lava flows of similar size, exhibit distinctive features (e.g., erosional channels). Although generated in a single rapid event, the post-impact mobility and morphology of lunar impact melts is surprisingly complex. We present evidence for multi-stage influx of impact melt into flow lobes and crater floor ponds. Our volume and cooling time estimates for the post-emplacement melt movements noted in LROC images suggest that new flows can emerge from melt ponds an extended time period after the impact event.

Geophysical Research Letters↗

USGS2019

Comparison of a simple hydrostatic and a data-intensive 3D numerical modeling method of simulating sea-level rise induced groundwater inundation for Honolulu, Hawai'i, USA

Groundwater inundation (GWI) is a particularly challenging consequence of sea-level rise (SLR), as it progressively inundates infrastructure located above and below the ground surface. Paths of flooding by GWI differ from other types of SLR flooding (i.e., wave overwash, storm-drain backflow) such that it is more difficult to mitigate, and thus requires a separate set of highly innovative adaptation strategies to manage. To spur consideration of GWI in planning, data-intensive numerical modeling methods have been developed that produce locally specific visualizations of GWI, though the accessibility of such methods is limited by extensive data requirements. Conversely, the hydrostatic (or 'bathtub') modeling approach is widely used in adaptation planning owing to easily accessed visualizations (i.e., NOAA SLR Viewer), yet its capacity to simulate GWI has never been tested. Given the separate actions necessary to mitigate GWI relative to marine overwash, this is a significant gap. Here we compare a simple hydrostatic modeling method with a more deterministic, dynamic and robust 3D numerical modeling approach to explore the effectiveness of the hydrostatic method in simulating equilibrium aquifer effects of multi-decadal sea-level rise, and in turn GWI for Honolulu, Hawai'i. We find hydrostatic modeling in the Honolulu area and likely other settings may yield similar results to numerical modeling when referencing the local mean higher-high water tide datum (generally typical of flood studies). These findings have the potential to spur preliminary understanding of GWI impacts in municipalities that lack the required data to conduct rigorous groundwater-modeling investigations. We note that the methods explored here for Honolulu do not simulate dynamic coastal processes (i.e., coastal erosion, sediment accretion or changes in land cover) and thus are most appropriately applied to regions that host heavily armored shorelines behind which GWI can develop.

Hawaii↗

USGS2021

Ten simple rules for productive lab meetings

The aim of this article is to delineate 10 simple rules on how to achieve productive lab meetings. We use the term “meeting” interchangeably to represent both the single meeting event and the overarching concept of the recurring meeting. In this article we speak from our experience, as a lab group at the University of Massachusetts that meets regularly ( Fig 1 ). Although the rules are mostly tailored toward academic or research institution settings, insights can be gained for other contexts. We believe these rules are applicable across a diverse set of labs and lab structures. For example, while many members of our current lab have remained constant for many years, the lab composition has changed as various undergraduate students, graduate students, postdoctoral fellow, visiting professors, and other faculty have joined and/or moved on. Throughout these experiences, lab rules, presented in modified form here, proved flexible and adaptable enough to be useful in helping guide productive lab meetings. Note that this article is written for principal investigator/s (PI), students, postdocs, and other lab members; it takes the whole lab group to succeed. The key to planning productive lab meetings boils down to discussing and determining as a team the answers to why, who, what, where, when, and how: Why are lab meetings important for the functioning of the lab? Who will participate? What will be the focus of lab meetings? When and where should the lab meetings occur? How should each meeting be structured and carried out so that the goals and objectives of the lab and its participants are met?

PLOS Computational Biology↗

USGS2021

Paleozoic and Mesozoic tectonic events west of the Waterbury Dome: Results of new mapping in the western Connecticut Highlands

This field trip highlights the results of recent U.S. Geological Survey (USGS) bedrock geologic mapping in four 7.5 min quadrangles in the western Connecticut highlands near Southbury, Connecticut, USA. The rocks are broadly within what Rodgers (1985) called the Hartland and Gneiss Dome belts of the Connecticut Valley Synclinorium ( Rodgers, 1985 ; Fig. 1 ), the latter of which is now known as the Connecticut Valley–Gaspe Trough (Hibbard et al., 2006). The mapping occurred over two intervals: 2003–2005 and 2016–present. In the first, the goal was a detailed map of the early Mesozoic Pomperaug basin, which overlaps the four quadrangles. Portions of the basin had been separately mapped during the statewide 7.5 min quadrangle mapping campaign spanning the 1950s–1970s, resulting in an inaccurate depiction of the basin on the 1985 state geologic map ( Rodgers, 1985 ). A new map of the basin was proposed in part to benefit an ongoing project by the USGS Connecticut Water Science Center to determine the contributions of natural and artificial contaminants to a public water-supply well in Woodbury, Connecticut, under the National Water-Quality Assessment (NAWQA) Program ( Starn and Brown, 2007) . The NAWQA project was partially funded by the Pomperaug River Watershed Coalition, which also provided logistical support to the geologic mapping project. Mapping of the basin was also a high priority for the Connecticut State Geologist at the time (Ralph Lewis, 2002, pers. comm.). The mapping resulted in an NEIGC (New England Intercollegiate Geologic Conference) field guide ( Burton et al., 2005) and a 1:12,000-scale USGS open-file map ( Burton, 2006) and was funded by the USGS National Cooperative Geologic Mapping Program (NCGMP). The second phase of the mapping began in 2016 after the discovery of elevated levels of uranium and arsenic in domestic water wells in the igneous and metamorphic rocks that surround the sedimentary and volcanic rocks of the Pomperaug basin ( Flanagan and Brown, 2017) . Structural measurements in the surrounding crystalline rocks were made during Pomperaug basin mapping to better understand the tectonic setting, but a revision of the crystalline map units on Rodgers’ 1985 geologic map was not attempted. Nonetheless, discrepancies were noted between the new mapping and the 1985 map, particularly within the two northern quadrangles of Woodbury and Roxbury, which were originally mapped by Gates (1954) and Gates (1959) , respectively. Based on these discrepancies, a new NCGMP project was proposed to remap the Woodbury and Roxbury 7.5 min quadrangles, commencing in the fall of 2016. The expected USGS product will be a two-quadrangle, 1:24,000-scale Scientific Investigations Map (SIM). This field guide is not meant as a comprehensive review of all of the geologic research done in this area of Connecticut; rather, it looks at previous bedrock geologic mapping from the perspective of new and recent mapping in the four-quadrangle area and discusses the structural, stratigraphic, and nomenclatural revisions necessary for the next revision of the state geologic map.

Connecticut↗

USGS2012

Implications of silicic vent patterns for the presence of large crustal magma chambers

On the basis of the distribution of silicic vents, many volcanic fields can be grouped with (1) igneous systems that may be small and whose vent locations are controlled by regional tectonics, (2) those that include sizable crustal magma bodies which erupt at sites determined by their anomalous local stress fields, or (3) relatively small volume systems that are transitional between categories 1 and 2. Linear vent patterns that are aligned normal to the regional least principal stress (σ 3 ) commonly are associated with absence of evidence for large, shallow magma bodies. The Coso volcanic field and the Inyo‐Mono domes in California and probably the South Sister area in Oregon are examples of such systems. The 1960 dacitic fissure eruption at Cordón Caulle in southern Chile evidently is linked to tectonic stress relaxation associated with the great earthquake that occurred 48 hours before the eruption began. Large, shallow magma chambers are thought to perturb the local stress field so that areal patterns of silicic vents are diffuse, radial, or arcuate. Such systems may erupt great volumes of pyroclastic material catastrophically and produce large calderas. Well‐preserved examples of late precaldera leaks of silicic magma occur at Long Valley, California, and Mount Mazama (Crater Lake), Oregon. Other possible examples are noted. Some of these, those which formed calderas smaller than Crater Lake, apparently were preceded by silicic eruptions from aligned vents. Bearing in mind that there exists a transitional group between tectonically controlled small systems and very large magma chambers, vent distributions can be useful in evaluating potential volcanic hazards for silicic volcanic fields.

California↗

USGS2007

The United States Polar Rock Repository: A geological resource for the Earth science community

The United States Polar Rock Repository (USPRR) is a U. S. national facility designed for the permanent curatorial preservation of rock samples, along with associated materials such as field notes, annotated air photos and maps, raw analytic data, paleomagnetic cores, ground rock and mineral residues, thin sections, and microfossil mounts, microslides and residues from Polar areas. This facility was established by the Office of Polar Programs at the U. S. National Science Foundation (NSF) to minimize redundant sample collecting, and also because the extreme cold and hazardous field conditions make fieldwork costly and difficult. The repository provides, along with an on-line database of sample information, an essential resource for proposal preparation, pilot studies and other sample based research that should make fieldwork more efficient and effective. This latter aspect should reduce the environmental impact of conducting research in sensitive Polar Regions. The USPRR also provides samples for educational outreach. Rock samples may be borrowed for research or educational purposes as well as for museum exhibits.

Open-File Report↗

USGS2000

Microsatellites: Evolutionary and methodological background and empirical applications at individual, population, and phylogenetic levels

The recent proliferation and greater accessibility of molecular genetic markers has led to a growing appreciation of the ecological and evolutionary inferences that can be drawn from molecular characterizations of individuals and populations (Burke et al. 1992, Avise 1994). Different techniques have the ability to target DNA sequences which have different patterns of inheritance, different modes and rates of evolution and, concomitantly, different levels of variation. In the quest for 'the right marker for the right job', microsatellites have been widely embraced as the marker of choice for many empirical genetic studies. The proliferation of microsatellite loci for various species and the voluminous literature compiled in very few years associated with their evolution and use in various research applications, exemplifies their growing importance as a research tool in the biological sciences. The ability to define allelic states based on variation at the nucleotide level has afforded unparalleled opportunities to document the actual mutational process and rates of evolution at individual microsatellite loci. The scrutiny to which these loci have been subjected has resulted in data that raise issues pertaining to assumptions formerly stated, but largely untestable for other marker classes. Indeed this is an active arena for theoretical and empirical work. Given the extensive and ever-increasing literature on various statistical methodologies and cautionary notes regarding the uses of microsatellites, some consideration should be given to the unique characteristics of these loci when determining how and under what conditions they can be employed.

Book chapter↗

USGS1982

A.B.A. Checklist: Birds of Continental United States and Canada

The 'Summary' in this edition of the A BA Checklist has been greatly expanded to include all properly documented records for each accidental species. These records are published, except for a very few recent ones which are in press or in preparation. Emphasis is on records supported by specimens or photographs, but sight records are also included. To make these accounts more useful to researchers, a reference has been given for each record. All records, except those identified as '(photo)' or '(specimen)', or by some other type of objective evidence, are sight records. Because of the interest shown in this section of the Checklist, coverage has not been confined to accidental species (defined as those which have occurred fewer than ten times in the ABA Checklist area during the twentieth century). Accounts are also given for selected rare visitors and native species. Two of the primary references are abbreviated in the accounts: Audubon Field Notes-AFN, and American Birds-AB.

Book↗

USGS2026

Streamflow and surface-water presence data availability across the conterminous United States: A review for headwater systems

Water is essential for life on Earth, supporting ecosystems, human health, and economic activities. Hydrology relies on observational data, and this paper discusses regional and national datasets for the conterminous United States (CONUS) publicly available as of 2023, focusing on headwaters, defined as first- and second-order streams at 1:24000 scale. It identifies 72 primary and secondary datasets and 11 repositories and argues how better integration and accessibility of hydrological data can improve research. The paper distinguishes between datasets where streamflow was the primary data collection objective and those where it was secondary. This distinction highlights opportunities to consider data from efforts peripheral to hydrology but is still useful for understanding hydrologic conditions. The analysis reveals that out of about 118 000 active and inactive stream observation sites, about 6.6% and 25% are located on first- and second-order streams, respectively. This indicates a substantial data gap for headwater systems, which account for over 77% of stream length in CONUS. Federal agencies manage 72% of hydrologic monitoring sites across all stream orders, but only 34% of these are in headwater systems. Academic institutions operate about 2% of sites, with almost half (48%) in headwater systems, focusing on ecosystem research. State agencies also operate about 2% of sites, primarily on larger systems, with 19% on headwaters. Additionally, 23% of sites are managed by multiple agencies. Spatial patterns further reveal pronounced disparities among physiographic regions. Eastern and coastal provinces show relatively dense monitoring, while central and western regions show sparse coverage. These gaps reflect historical priorities, logistical constraints, funding limitations, and the high cost of continuous instrumentation. To address biases in monitoring networks, data collection could be enhanced with low-cost monitoring, community science, and remote sensing technologies. This study also notes the benefits of long-term monitoring and prioritizing retention of streamgages with longer records.

conterminous United States↗

USGS2012

California spotted owls

California spotted owls ( Strix occidentalis occidentalis ) are habitat specialists that are strongly associated with late-successional forests. For nesting and roosting, they require large trees and snags embedded in a stand with a complex forest structure (Blakesley et al. 2005, Gutiérrez et al. 1992, Verner et al. 1992b). In mixed-conifer forests of the Sierra Nevada, California spotted owls typically nest and roost in stands with high canopy closure (≥75 percent) [Note: when citing studies, we use terminology consistent with Jennings et al. (1999), however, not all studies properly distinguish between canopy cover and closure and often use the terms interchangeably (see chapter 14 for clarification)] and an abundance of large trees (>24 in (60 cm) diameter at breast height [d.b.h.]) (Bias and Gutiérrez 1992, Gutiérrez et al. 1992, LaHaye et al. 1997, Moen and Gutiérrez 1997, Verner et al. 1992a). The California spotted owl guidelines (Verner et al. 1992b) effectively summarized much of the information about nesting and roosting habitat. Since that report, research on the California spotted owl has continued with much of the new information concentrated in five areas: population trends, barred owl ( Strix varia ) invasion, climate effects, foraging habitat, and owl response to fire.

California↗

USGS1973

Use of machine-processable field notes in a wilderness mapping project (Granite Fiords area), southeastern Alaska

For reconnaissance geologic mapping and mineral resource evaluation of the Granite Fiords wilderness study area, we developed and used a system of machine-processable field notes. Preprinted field forms standardize notes and serve as checklists that insure collection of all available data. The use of this system cut in half the time required to record data at an outcrop. The system consists of three related but different types of preprinted field sheets, a key to abbreviations and codes, and a set of written instructions. The field sheets include a station sheet for basic outcrop data, a specimen sheet for rock samples, and a geochemical sheet for materials to be chemically analyzed. Data on the field sheets are keypunched on standard IBM cards, then arranged in subfiles and retrieved by using a card sorter. Our system is designed specifically for a region of granitic and metamorphic rocks but is easily modified for use in different geologic terranes. We offer four guidelines for developing a system of machine-processable field notes: (1) Time and money spent to develop the system must be worth its anticipated benefits. (2) The system should be as flexible as possible. (3) It is necessary to tailor the system to a particular geologic terrane or project objective. (4) The system should be as simple and self-explanatory as possible.

Alaska↗

USGS2026

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2025

Lake Erie has the most populated watershed of all the Great Lakes and has undergone dramatic anthropogenic changes. Since the 1800s, overexploitation of fish populations, habitat destruction, non-native species proliferation, industrial contamination, and changes in nutrient loading have impacted the fish community including declines in or extirpation of many native species (Regier et al. 1969, Hartman 1973; Leach & Nepszy 1976; Ludsin et al. 2001). Implementation of the Clean Water Act and Great Lakes Water Quality Agreement in the 1970s improved habitat conditions (Reutter 2019), which contributed to several strong percid year-classes (Vandergoot et al. 2019). These strong year-classes also benefited from more restrictive management practices that reduced harvest, ultimately rehabilitating Lake Erie percid stocks (Kayle et al. 2015, STC 2020). Historically, Lake Erie supported a cool water fish community dominated by percids and salmonids. Recently updated FCOs set forth a vision that “Lake Erie will consist of diverse fish communities that support ongoing societal benefits, including thriving commercial and recreational fisheries, improved fish habitat and desirable ecosystem performance, and reduced adverse impacts from invasive fish” (Francis et al. 2020). Today, mixed fisheries resulting from seasonally changing cool and warm water habitats have developed in Lake Erie, and the new FCOs reflect a desire to manage both predator and prey fish communities within them. Although Lake Erie management agencies have traditionally focused on numerical indices of a few economically important species, aquatic ecosystem models are typically evaluated in terms of entire fish community biomass. As a result, our understanding of fish community structure and ecosystem dynamics from biomass-based models has been limited to short-term investigations and proxy measurements (e.g., length-weight conversion; FTG 2020). Therefore, many Lake Erie fish community databases are now incorporating biomass-based measurements. In response, USGS revised the Lake Erie trawl program to provide biomass-based measurements for all encountered species (Table 1). The survey design change occurred in 2012, coincident with commissioning of a new research vessel and a change in bottom trawl gear. These modifications already altered the existing time series; therefore, the survey design was also expanded to include greater spatial coverage and increased sample size generating a new time series. The purpose of this report is to develop a comprehensive understanding of the long-term changes and fish community dynamics including population dynamics of key fishes of interest to management agencies, such as native percids and their prey. Here, we summarize survey results for the most recent series of West Basin trawl data from 2013 through 2025. Note that a detailed description of the sampling process along with traditional numericallybased catch data (e.g., fish/ha) for individual species can be downloaded online (DuFour et al. 2026) or obtained for earlier years (https://doi.org/10.5066/F75M63X0; U.S. Geological Survey, Great Lakes Science Center 2019).

western Lake Erie↗

USGS2024

Assessing spatial variability of nutrients, phytoplankton, and related water-quality constituents in the California Sacramento–San Joaquin Delta at the landscape scale—2018 high resolution mapping surveys

Executive Summary This study examined the abundance and distribution of nutrients and phytoplankton in the tidal aquatic environments of the Sacramento–San Joaquin Delta (Delta) and Suisun Bay, comprising three spatial surveys conducted in May, July, and October of 2018 that used continuous underway high frequency sampling and measurements onboard a high-speed boat to characterize spatial variation across the extent of the Delta. The method used involves simultaneously collecting information about the concentration and spatial distribution of all major nutrient forms with analogous information about the major classes of phytoplankton and associated water-quality conditions. The results showed substantial variation across space and time, providing an unprecedented snapshot of the dynamic environmental processes that shape the ways nutrients interact with and affect aquatic habitats in the Delta. The purposes of this study were to improve our understanding of how hydrodynamics, landscape features, and aquatic primary productivity interact to drive nutrient cycling and transport in the Delta and to provide insights into the underlying processes most directly responsible for the conditions at the time of this study, and thus into the range of conditions that may be expected following the wide array of prospective future changes to the Delta. One major anticipated change at the time of this study was the planned upgrade to the Sacramento Regional Wastewater Treatment Plant, but the study also informs our understanding of potential effects from other changes to the Delta, such as those caused by other nutrient-management actions, flow actions, large-scale wetland restoration, drought, flood, levee failure, and changes to water management. Nutrient loading is the primary driver of nutrient concentrations in the Delta, but several other major drivers interact to shape their distribution and effects: geomorphology, hydrodynamics, landscape features, and aquatic productivity. Hydrodynamics affect timescales of transport and dilution of nutrient loads in the Delta. During transit through the system, channel geometry, tidal mixing, and water exports affect hydrodynamics in diverse ways that influence water-residence and transport times, thereby markedly affecting the range of times during which natural internal cycling can alter nutrient concentrations and forms. Channel geometry and location shape tidal energy and river currents into these observed dynamics. Interactions with Delta aquatic landscapes such as herbaceous tidal marsh, submerged aquatic vegetation, and large expanses of intertidal or subtidal sediments (all highly productive landscapes) exert demand on available nutrient supplies but can also simultaneously transform and generate nutrients. Finally, while phytoplankton require nutrients to sustain production and thus are a potential nutrient sink, the amount and form of nutrients also can influence the occurrence of harmful algal blooms (HABs) that adversely affect aquatic organisms as well as affect the occurrence of beneficial algal blooms that result in production of algae that are favorable for imperiled Delta pelagic aquatic food webs. The surveys revealed a complex mosaic of spatial variation, with nutrient concentrations varying from near zero to well above concentrations considered eutrophic; nutrient concentrations were more often related to the extent of hydrologic transport and mixing than to specific geographic locations or to specific landscape features. Similarly, the surveys identified phytoplankton abundance ranging from near detection to the level of large phytoplankton blooms, with large variation in phytoplankton community composition. Although the study occurred during a period of low bloom activity, phytoplankton productivity appeared to be the strongest potential sink for inorganic nutrients in the Delta, indicating that it is a larger control on nutrient concentrations and distribution than previously understood. Cycling and transformation within the water column only appeared to substantially lower total nutrient concentrations at the longest estimated transport timescales. Contrary to expectations, we did not observe substantial nutrient depletion near landscape-scale features such as open-water habitats, submerged aquatic vegetation beds, extensive wetlands, or exposed sediments, indicating that these habitat types did not act as major sinks for nutrients in the Delta during these surveys. These results indicated that nutrient reduction efforts may have the greatest effect on pelagic phytoplankton productivity in the more productive reaches of the Delta and estuary, but these effects are unlikely to be magnified by changes to nutrient loss within the Delta over conceivable changes in flow conditions, Delta water management actions, or large-scale wetland restoration activities. Nevertheless, local processes were shown to cause substantial loss, and thus integrating of nutrient effects with other indicators of aquatic habitat conditions will help inform planning future actions at specific sites. Finally, we note that the primary contribution of this study was intended to be the survey data themselves. Aside from the results highlighted in this report, the surveys are a benchmark against which future environmental change may be evaluated, including changes to nutrient management or water exports, drought, large-scale wetland restoration, and climate change. Further, although we highlight some of the main findings from the surveys in this report, the necessarily limited scope precludes examination of many topics for which these surveys may be highly informative. To facilitate the utility of these data to stakeholders, managers, and researchers, we have released the data online (Bergamaschi and others, 2020) and created an online data exploration portal ( https://ca.water.usgs.gov/bay-delta/2018-delta-wide-mapping-surveys.html ) where users may query the surveys in a variety of ways to test hypotheses, examine relationships, assess spatial trends, and download data. The data exploration portal is intended to be an immersive experience that allows users to gain greater understanding of the complex interactions that shape Delta aquatic environments. This report is intended as a companion to the portal, allowing the reader to challenge and further explore the highlighted findings. This study was a collaboration between the U.S. Geological Survey and the Delta Regional Monitoring Program, with additional funding provided from U.S. Geological Survey Cooperative Matching Funds Program.

California↗