Geology topics

Research about Idaho

Source-linked reports with geographic coverage including Idaho.

At least 397 records · Page 22Linked to original sources

USGS2011

Effects of lead-contaminated sediment and nutrition on mallard duckling behavior and growth

Sediment ingestion has become a recognized exposure route for toxicants in waterfowl. The effects of lead-contaminated sediment from the Coeur d’Alene River Basin (CDARB) in Idaho were evaluated on mallard (Anas platyryhnchos) duckling behavior and growth over a 5-wk period using time–activity budgets. Day-old ducklings received either a clean sediment (24%) supplemented control diet, CDARB sediment (3449 μg/g lead) supplemented diets at 12% or 24%, or a positive control diet (24% clean sediment with equivalent lead acetate to the 24% CDARB diet). Ten different behaviors were recorded for nine ducklings per treatment as time spent: resting, standing, moving, drinking, dabbling, feeding, pecking, preening, bathing, and swimming. Contaminated sediment (24% CDARB) and lead acetate significantly decreased the proportion of time spent swimming. There were also problems with balance and mobility in the 24% CDARB and the lead acetate groups. With a less optimal diet (mixture of two-thirds corn and one-third standard diet) containing 24% clean sediment, nutrient level alone affected 6 different behaviors: feeding, pecking, swimming, preening, standing, and dabbling. Nutrient level also significantly decreased the growth rate and delayed the initial time of molt. When the corn diet contained CDARB sediment, the proportion of time spent bathing in the 24% CDARB group significantly decreased. There were also instances of imbalance with 24% CDARB and corn diet, and duckling weights were significantly lower than in corn diet controls. The decreased amounts of time spent swimming or bathing, coupled with problems of balance and mobility, decreased growth, histopathological lesions, and altered brain biochemistry (reported elsewhere), illustrate a potential threat to the survival of ducklings in the wild that are exposed to lead-containing sediments within the CDARB or elsewhere.

Idaho↗

USGS2011

Coexistence in streams: Do source-sink dynamics allow salamanders to persist with fish predators?

Theory suggests that source–sink dynamics can allow coexistence of intraguild predators and prey, but empirical evidence for this coexistence mechanism is limited. We used capture–mark–recapture, genetic methods, and stable isotopes to test whether source–sink dynamics promote coexistence between stream fishes, the intraguild predator, and stream salamanders ( Dicamptodon aterrimus ), the intraguild prey. Salamander populations from upstream reaches without fish were predicted to maintain or supplement sink populations in downstream reaches with fish. We found instead that downstream reaches with fish were not sinks even though fish consumed salamander larvae—apparent survival, recruitment, and population growth rate did not differ between upstream and downstream reaches. There was also no difference between upstream and downstream reaches in net emigration. We did find that D. aterrimus moved frequently along streams, but believe that this is a response to seasonal habitat changes rather than intraguild predation. Our study provides empirical evidence that local-scale mechanisms are more important than dispersal dynamics to coexistence of streams salamanders and fish. More broadly, it shows the value of empirical data on dispersal and gene flow for distinguishing between local and spatial mechanisms of coexistence.

Idaho↗

USGS2011

Patterns of hybridization of nonnative cutthroat trout and hatchery rainbow trout with native redband trout in the Boise River, Idaho

Hybridization is one of the greatest threats to native fishes. Threats from hybridization are particularly important for native trout species as stocking of nonnative trout has been widespread within the ranges of native species, thus increasing the potential for hybridization. While many studies have documented hybridization between native cutthroat trout Oncorhynchus clarkii and nonnative rainbow trout O. mykiss , fewer have focused on this issue in native rainbow trout despite widespread threats from introductions of both nonnative cutthroat trout and hatchery rainbow trout. Here, we describe the current genetic (i.e., hybridization) status of native redband trout O. mykiss gairdneri populations in the upper Boise River, Idaho. Interspecific hybridization was widespread (detected at 14 of the 41 sampled locations), but high levels of hybridization between nonnative cutthroat trout and redband trout were detected in only a few streams. Intraspecific hybridization was considerably more widespread (almost 40% of sampled locations), and several local populations of native redband trout have been almost completely replaced with hatchery coastal rainbow trout O. mykiss irideus ; other populations exist as hybrid swarms, some are in the process of being actively invaded, and some are maintaining genetic characteristics of native populations. The persistence of some redband trout populations with high genetic integrity provides some opportunity to conserve native genomes, but our findings also highlight the complex decisions facing managers today. Effective management strategies in this system may include analysis of the specific attributes of each site and population to evaluate the relative risks posed by isolation versus maintaining connectivity, identifying potential sites for control or eradication of nonnative trout, and long-term monitoring of the genetic integrity of remaining redband trout populations to track changes in their status.

Idaho↗

USGS2011

Episodic soil succession on basaltic lava fields in a cool, dry environment

Holocene- to late Pleistocene-aged lava flows at Craters of the Moon National Monument and Preserve provide an ideal setting to examine the early stages of soil formation under cool, dry conditions. Transects were used to characterize the amount and nature of soil cover on across basaltic lava flows ranging in age from 2.1 to 18.4 ka. Results indicate that on flows <13 ka, very shallow organic soils (Folists in Soil Taxonomy) are the dominant soil type, providing an areal coverage of up to &sim;25%. On flows ≥13.9 ka, deeper mineral soils including Entisols, Aridisols, and Mollisols become dominant and the areal extent increases to ≥95% on flows older than 18.4 ka. These data suggest there are two distinct pedogenic pathways associated with lava flows of the region. The first pathway is illustrated by the younger flows, where Folists dominate. In the absence of a major source of loess, relatively little mineral material accumulates and soils provide only minor coverage of the lava flows. Our results indicate that this pathway of soil development has not changed appreciably over the past &sim;10 ka. The second pedogenic pathway is illustrated by the flows older than 13.9 ka. These flows have been subject to deposition of large quantities of loess during and after the last regional glaciation, resulting in almost complete coverage. Subsequent pedogenesis has given rise to Aridisols and Mollisols with calcic and cambic horizons and mollic epipedons. This research highlights the importance of regional climate change on the evolution of Craters of the Moon soilscapes.

Idaho↗

USGS2011

Geophysical logs and water-quality data collected for boreholes Kimama-1A and -1B, and a Kimama water supply well near Kimama, southern Idaho

In September 2010, a research consortium led by scientists from Utah State University began drilling the first of three continuously cored boreholes on the Snake River Plain in southern Idaho. The goals of this effort, the Snake River Scientific Drilling Project, are to study the interaction between the Earth's crust and mantle, to identify potential geothermal energy sources, and to track the evolution of the Yellowstone hotspot on the Snake River Plain. The first borehole, located near Kimama, Idaho, is about 50 miles southwest of the U.S. Department of Energy's Idaho National Laboratory. Because geohydrologic data are scarce for that area of the central Snake River Plain, the Kimama borehole, completed in January 2011, provided a unique opportunity to collect geophysical and water-chemistry data from the eastern Snake River Plain aquifer system, downgradient of the laboratory. Therefore, in conjunction with the Snake River Scientific Drilling Project, scientists from the U.S. Geological Survey's Idaho National Laboratory Project Office conducted geophysical logging and collected water samples at the Kimama site. Wireline geophysical logs were collected for the diverging borehole, Kimama-1A and -1B, from land surface to 976 and 2,498 feet below land surface (BLS), respectively. Water samples were collected from Kimama-1A at depths near 460 and 830 feet BLS, and from the Kimama Water Supply (KWS) well located about 75 feet away. Geophysical log data included a composite of natural gamma, neutron, gamma-gamma dual density, and gyroscopic analysis for boreholes Kimama-1A and -1B. Geophysical logs depicted eight sediment layers (excluding surficial sediment) ranging from 4 to 60 feet in thickness. About 155 individual basalt flows were identified, ranging from less than 3 feet to more than 175 feet in thickness (averaging 15 feet) for borehole Kimama-1B (0 to 2,498 feet BLS). Sediment and basalt contacts were selected based on geophysical traces and were confirmed with visual inspection of core photographs. Temperature logs from the water table surface (about 260 feet BLS) to the bottom of borehole Kimama-1B (2,498 feet BLS) were nearly isothermal, ranging from about 62 to 64 degrees Fahrenheit. Gyroscopic data revealed that borehole Kimama-1B begins to separate from borehole Kimama-1A near a depth of 676 feet BLS. Drillhole azimuth and horizontal deviation at total logged depth for boreholes Kimama-1A and -1B were 172.6 and 188.3 degrees and 25.9 and 82.0 feet, respectively. Water samples were collected and analyzed for common ions; selected trace elements; nutrients; isotopes of hydrogen, oxygen, and carbon; and selected radionuclides. One set of water samples was collected from the KWS well and the two other sample sets were collected from borehole Kimama-1A near 460 and 830 feet BLS. With one exception, data for all three zones sampled near Kimama generally indicated that the water chemistry was similar. The exception was found in the deepest zone in borehole Kimama-1A (830 feet BLS) where concentrations probably were affected by the drilling mud. A comparison of the inorganic, organic, and stable chemistry data between the KWS well and the 460-foot zone in borehole Kimama-1A indicated similar chemistry of the aquifer water, except for some variability with nitrate plus nitrite, orthophosphate, iron, zinc, and carbon-14. Radionuclide concentrations were either less than reporting levels or at background levels for the eastern Snake River Plain aquifer.

Idaho↗

USGS2011

Multilevel groundwater monitoring of hydraulic head and temperature in the eastern Snake River Plain aquifer, Idaho National Laboratory, Idaho, 2007-08

During 2007 and 2008, the U.S. Geological Survey, in cooperation with the U.S. Department of Energy, collected quarterly depth-discrete measurements of fluid pressure and temperature in six boreholes located in the eastern Snake River Plain aquifer of Idaho. Each borehole was instrumented with a multilevel monitoring system consisting of a series of valved measurement ports, packer bladders, casing segments, and couplers. Hydraulic heads (head) and water temperatures in boreholes were monitored at 86 hydraulically-isolated depth intervals located 448.0 to 1,377.6 feet below land surface. The calculation of head is most sensitive to fluid pressure and the altitude of the pressure transducer at each port coupling; it is least sensitive to barometric pressure and water temperature. An analysis of errors associated with the head calculation determined the accuracy of an individual head measurement at +/- 2.3 feet. Many of the sources of measurement error are diminished when considering the differences between two closely-spaced readings of head; therefore, a +/- 0.1 foot measurement accuracy was assumed for vertical head differences (and gradients) calculated between adjacent monitoring zones. Vertical head and temperature profiles were unique to each borehole, and were characteristic of the heterogeneity and anisotropy of the eastern Snake River Plain aquifer. The vertical hydraulic gradients in each borehole remained relatively constant over time with minimum Pearson correlation coefficients between head profiles ranging from 0.72 at borehole USGS 103 to 1.00 at boreholes USGS 133 and MIDDLE 2051. Major inflections in the head profiles almost always coincided with low permeability sediment layers. The presence of a sediment layer, however, was insufficient for identifying the location of a major head change in a borehole. The vertical hydraulic gradients were defined for the major inflections in the head profiles and were as much as 2.2 feet per foot. Head gradients generally were downward in boreholes USGS 133, 134, and MIDDLE 2050A, zero in boreholes USGS 103 and 132, and exhibited a reversal in direction in borehole MIDDLE 2051. Water temperatures in all boreholes ranged from 10.2 to 16.3 degrees Celsius. Boreholes USGS 103 and 132 are in an area of concentrated volcanic vents and fissures, and measurements show water temperature decreasing with depth. All other measurements in boreholes show water temperature increasing with depth. A comparison among boreholes of the normalized mean head over time indicates a moderately positive correlation.

Idaho↗

USGS2011

Paleomagnetic correlation of surface and subsurface basaltic lava flows and flow groups in the southern part of the Idaho National Laboratory, Idaho, with paleomagnetic data tables for drill cores

Paleomagnetic inclination and polarity studies have been conducted on thousands of subcore samples from 51 coreholes located at and near the Idaho National Laboratory. These studies are used to paleomagnetically characterize and correlate successive stratigraphic intervals in each corehole to similar depth intervals in adjacent coreholes. Paleomagnetic results from 83 surface paleomagnetic sites, within and near the INL, are used to correlate these buried lava flow groups to basaltic shield volcanoes still exposed on the surface of the eastern Snake River Plain. Sample handling and demagnetization protocols are described as well as the paleomagnetic data averaging process. Paleomagnetic inclination comparisons between coreholes located only kilometers apart show comparable stratigraphic successions of mean inclination values over tens of meters of depth. At greater distance between coreholes, comparable correlation of mean inclination values is less consistent because flow groups may be missing or additional flow groups may be present and found at different depth intervals. Two shallow intersecting cross-sections, A-A- and B-B- (oriented southwest-northeast and northwest-southeast, respectively), drawn through southwest Idaho National Laboratory coreholes show the corehole to corehole or surface to corehole correlations derived from the paleomagnetic inclination data. From stratigraphic top to bottom, key results included the (1) Quaking Aspen Butte flow group, which erupted from Quaking Aspen Butte southwest of the Idaho National Laboratory, flowed northeast, and has been found in the subsurface in corehole USGS 132; (2) Vent 5206 flow group, which erupted near the southwestern border of the Idaho National Laboratory, flowed north and east, and has been found in the subsurface in coreholes USGS 132, USGS 129, USGS 131, USGS 127, USGS 130, USGS 128, and STF-AQ-01; and (3) Mid Butte flow group, which erupted north of U.S. Highway 20, flowed northwest, and has been found in the subsurface at coreholes ARA-COR-005 and STF-AQ-01. The high K20 flow group erupted from a vent that may now be buried south of U.S. Highway 20 near Middle Butte, flowed north, and is found in the subsurface in coreholes USGS 131, USGS 127, USGS 130, USGS 128, USGS 123, STF-AQ-01, and ARA-COR-005 ending near the Idaho Nuclear Technology and Engineering Center. The vent 5252 flow group erupted just south of U.S. Highway 20 near Middle and East Buttes, flowed northwest, and is found in the subsurface in coreholes ARA-COR-005, STF-AQ-01, USGS 130, USGS 128, ICPP 214, USGS 123, ICPP 023, USGS 121, USGS 127, and USGS 131. The Big Lost flow group erupted from a now-buried vent near the Radioactive Waste Management Complex, flowed southwest to corehole USGS 135, and northeast to coreholes USGS 132, USGS 129, USGS 131, USGS 127, USGS 130, STF-AQ-01, and ARA-COR-005. The AEC Butte flow group erupted from AEC Butte near the Advanced Test Reactor Complex and flowed south to corehole Middle 1823, northwest to corehole USGS 134, northeast to coreholes USGS 133 and NRF 7P, and south to coreholes USGS 121, ICPP 023, USGS 123, and USGS 128. Evidence of progressive subsidence of the axial zone of the ESRP is shown in these cross-sections, distorting the original attitudes of the lava flow groups and interbedded sediments. A deeper cross-section, C-C- (oriented west to east), spanning the entire southern Idaho National Laboratory shows correlations of the lava flow groups in the saturated part of the ESRP aquifer. Areally extensive flow groups in the deep subsurface (from about 100-800 meters below land surface) can be traced over long distances. In cross-section C-C-, the flow group labeled "Matuyama" can be correlated from corehole USGS 135 to corehole NPR Test/W-02, a distance of about 28 kilometers (17 miles). The flow group labeled "Matuyama 1.21 Ma" can be correlated from corehole Middle 1823 to corehole ANL-OBS-A-001, a distance of 26 kilometers (16 miles). Other flo

Idaho↗

USGS2011

Evaluation of LiDAR-acquired bathymetric and topographic data accuracy in various hydrogeomorphic settings in the Deadwood and South Fork Boise Rivers, West-Central Idaho, 2007

High-quality elevation data in riverine environments are important for fisheries management applications and the accuracy of such data needs to be determined for its proper application. The Experimental Advanced Airborne Research LiDAR (Light Detection and Ranging)-or EAARL-system was used to obtain topographic and bathymetric data along the Deadwood and South Fork Boise Rivers in west-central Idaho. The EAARL data were post-processed into bare earth and bathymetric raster and point datasets. Concurrently with the EAARL surveys, real-time kinematic global positioning system surveys were made in three areas along each of the rivers to assess the accuracy of the EAARL elevation data in different hydrogeomorphic settings. The accuracies of the EAARL-derived raster elevation values, determined in open, flat terrain, to provide an optimal vertical comparison surface, had root mean square errors ranging from 0.134 to 0.347 m. Accuracies in the elevation values for the stream hydrogeomorphic settings had root mean square errors ranging from 0.251 to 0.782 m. The greater root mean square errors for the latter data are the result of complex hydrogeomorphic environments within the streams, such as submerged aquatic macrophytes and air bubble entrainment; and those along the banks, such as boulders, woody debris, and steep slopes. These complex environments reduce the accuracy of EAARL bathymetric and topographic measurements. Steep banks emphasize the horizontal location discrepancies between the EAARL and ground-survey data and may not be good representations of vertical accuracy. The EAARL point to ground-survey comparisons produced results with slightly higher but similar root mean square errors than those for the EAARL raster to ground-survey comparisons, emphasizing the minimized horizontal offset by using interpolated values from the raster dataset at the exact location of the ground-survey point as opposed to an actual EAARL point within a 1-meter distance. The average error for the wetted stream channel surface areas was -0.5 percent, while the average error for the wetted stream channel volume was -8.3 percent. The volume of the wetted river channel was underestimated by an average of 31 percent in half of the survey areas, and overestimated by an average of 14 percent in the remainder of the survey areas. The EAARL system is an efficient way to obtain topographic and bathymetric data in large areas of remote terrain. The elevation accuracy of the EAARL system varies throughout the area depending upon the hydrogeomorphic setting, preventing the use of a single accuracy value to describe the EAARL system. The elevation accuracy variations should be kept in mind when using the data, such as for hydraulic modeling or aquatic habitat assessments.

Idaho↗

USGS2011

Updated one-dimensional hydraulic model of the Kootenai River, Idaho: A supplement to Scientific Investigations Report 2005-5110

The Kootenai Tribe of Idaho, in cooperation with local, State, Federal, and Canadian agency co-managers and scientists, is assessing the feasibility of a Kootenai River habitat restoration project in Boundary County, Idaho. The restoration project is focused on recovery of the endangered Kootenai River white sturgeon (Acipenser transmontanus) population, and simultaneously targets habitat-based recovery of other native river biota. River restoration is a complex undertaking that requires a thorough understanding of the river and floodplain landscape prior to restoration efforts. To assist in evaluating the feasibility of this endeavor, the U.S. Geological Survey developed an updated one-dimensional hydraulic model of the Kootenai River in Idaho between river miles (RMs) 105.6 and 171.9 to characterize the current hydraulic conditions. A previously calibrated model of the study area, based on channel geometry data collected during 2002 and 2003, was the basis for this updated model. New high-resolution bathymetric surveys conducted in the study reach between RMs 138 and 161.4 provided additional detail of channel morphology. A light detection and ranging (LIDAR) survey was flown in the Kootenai River valley in 2005 between RMs 105.6 and 159.5 to characterize the floodplain topography. Six temporary gaging stations installed in 2006-08 between RMs 154.1 and 161.2, combined with five permanent gaging stations in the study reach, provided discharge and water-surface elevations for model calibration and verification. Measured discharges ranging from about 4,800 to 63,000 cubic feet per second (ft 3 /s) were simulated for calibration events, and calibrated water-surface elevations ranged from about 1,745 to 1,820 feet (ft) throughout the extent of the model. Calibration was considered acceptable when the simulated and measured water-surface elevations at gaging stations differed by less than (+/-)0.15 ft. Model verification consisted of simulating 10 additional events with measured discharges ranging from about 4,900 to 52,000 ft 3 /s, and comparing simulated and measured water-surface elevations at gaging stations. Average water-surface-elevation error in the verification simulations was 0.05 ft, with the error ranging from -1.17 to 0.94 ft over the range of events and gaging stations. Additional verification included a graphical comparison of measured average velocities that range from 1.0 to 6.2 feet per second to simulated velocities at four sites within the study reach for measured discharges ranging from about 7,400 to 46,600 ft 3 /s. The availability of high-resolution bathymetric and LIDAR data, along with the additional gaging stations in the study reach, allowed for more detail to be added to the model and a more thorough calibration, sensitivity, and verification analysis to be conducted. Model resolution and performance is most improved between RMs 140 and 160, which includes the 18.3-mile reach of the Kootenai River white sturgeon critical habitat.

Idaho↗

USGS2011

Seasonal seepage investigation on an urbanized reach of the lower Boise River, southwestern Idaho, water year 2010

The U.S. Geological Survey in cooperation with the Idaho Department of Water Resources Treasure Valley Comprehensive Aquifer Management Planning effort investigated seasonal groundwater gains and losses on the Boise River, Idaho, starting in November 2009 through August 2010. The investigation was conducted using seepage runs in 11 subreaches over a 14-mile reach from downstream of the inactive streamgage, Boise River below Diversion Dam (U.S. Geological Survey station No. 13203510) to the active Boise River at Glenwood Bridge streamgage (U.S. Geological Survey station No. 13206000). The seepage runs measured mainstem discharge, and significant tributary contributions and diversions along the reach. In addition, an evaluation of the groundwater hydraulic gradient was simultaneously conducted through shallow groundwater mini-piezometers adjacent to the river during February (low stream discharge) and May (high stream discharge) measurement timeframes. November discharge estimates, representative of autumn, had gains and losses that varied by subreach with an overall net gain of 42 ± 8 cubic feet per second (ft 3 /s). This finding compares favorably to a previous U.S. Geological Survey seepage investigation in November 1996 that found a gaining reach with an estimated gain of 52 ft 3 /s. This finding also is supported by a U.S. Geological Survey investigation in the study reach in November 1971 that estimated a gain of 74 ft 3 /s, which largely came from groundwater. The February discharge estimates, representative of winter conditions, showed variability in the reach with a net gain of 52 ft 3 /s with an uncertainty estimate of ± 7 ft 3 /s, which is consistent with the low stream discharge findings from November 2009. This finding is further supported by the differential hydraulic head measured at transect sites that qualitatively indicated groundwater to surface-water movement with few exceptions. The May discharge estimates, representative of the spring-time conditions, were gaining or potentially gaining in all but one of the upper subreaches between Boise River below Diversion Dam and Boise River near MK Nature Center sites, with seepage run results supported by hydraulic head differentials indicating a groundwater to surface-water movement. The lower end of the study reach between Boise River near MK Nature Center and Boise River at Glenwood Bridge sites showed more variability with observed hydraulic head differentials that partially supported the potential gains or losses in the reach. Overall, the reach had a calculated net gain of 24 ± 51 ft 3 /s and, therefore, this estimate may or may not reflect the actual conditions in the reach. The groundwater gains and losses in August, representative of summer conditions, varied in both the upper and lower parts of the reach, with a net loss of -88 ± 69 ft 3 /s. Overall, the reach experienced a net gain from groundwater at low stream discharges (November and February), a net loss to groundwater at moderately high stream discharge (August), and an ambiguous finding at a higher stream discharge (May). The hydraulic head differentials measured between the groundwater and surface water largely supported the calculated gain and loss estimates in the subreaches, with a potential for groundwater to surface-water movement at low stream discharge in February, and variability during high stream discharge conditions in May.

Scientific Investigations Report↗

USGS2011

Water-quality conditions near the confluence of the Snake and Boise Rivers, Canyon County, Idaho

Total Maximum Daily Loads (TMDLs) have been established under authority of the Federal Clean Water Act for the Snake River-Hells Canyon reach, on the border of Idaho and Oregon, to improve water quality and preserve beneficial uses such as public consumption, recreation, and aquatic habitat. The TMDL sets targets for seasonal average and annual maximum concentrations of chlorophyll- a at 14 and 30 micrograms per liter, respectively. To attain these conditions, the maximum total phosphorus concentration at the mouth of the Boise River in Idaho, a tributary to the Snake River, has been set at 0.07 milligrams per liter. However, interactions among chlorophyll- a , nutrients, and other key water-quality parameters that may affect beneficial uses in the Snake and Boise Rivers are unknown. In addition, contributions of nutrients and chlorophyll- a loads from the Boise River to the Snake River have not been fully characterized. To evaluate seasonal trends and relations among nutrients and other water-quality parameters in the Boise and Snake Rivers, a comprehensive monitoring program was conducted near their confluence in water years (WY) 2009 and 2010. The study also provided information on the relative contribution of nutrient and sediment loads from the Boise River to the Snake River, which has an effect on water-quality conditions in downstream reservoirs. State and site-specific water-quality standards, in addition to those that relate to the Snake River-Hells Canyon TMDL, have been established to protect beneficial uses in both rivers. Measured water-quality conditions in WY2009 and WY2010 exceeded these targets at one or more sites for the following constituents: water temperature, total phosphorus concentrations, total phosphorus loads, dissolved oxygen concentration, pH, and chlorophyll- a concentrations (WY2009 only). All measured total phosphorus concentrations in the Boise River near Parma exceeded the seasonal target of 0.07 milligram per liter. Data collected during the study show seasonal differences in all measured parameters. In particular, surprisingly high concentrations of chlorophyll- a were measured at all three main study sites in winter and early spring, likely due to changes in algal populations. Discharge conditions and dissolved orthophosphorus concentrations are key drivers for chlorophyll- a on a seasonal and annual basis on the Snake River. Discharge conditions and upstream periphyton growth are most likely the key drivers for chlorophyll- a in the Boise River. Phytoplankton growth is not limited or driven by nutrient availability in the Boise River. Lower discharges and minimal substrate disturbance in WY2010 in comparison with WY2009 may have caused prolonged and increased periphyton and macrophyte growth and a reduced amount of sloughed algae in suspension in the summer of WY2010. Chlorophyll- a measured in samples commonly is used as an indicator of sestonic algae biomass, but chlorophyll- a concentrations and fluorescence may not be the most appropriate surrogates for algae growth, eutrophication, and associated effects on beneficial uses. Assessment of the effects of algae growth on beneficial uses should evaluate not only sestonic algae, but also benthic algae and macrophytes. Alternatively, continuous monitoring of dissolved oxygen detects the influence of aquatic plant respiration for all types of algae and macrophytes and is likely a more direct measure of effects on beneficial uses such as aquatic habitat. Most measured water-quality parameters in the Snake River were statistically different upstream and downstream of the confluence with the Boise River. Higher concentrations and loads were measured at the downstream site (Snake River at Nyssa) than the upstream site (Snake River near Adrian) for total phosphorus, dissolved orthophosphorus, total nitrogen, dissolved nitrite and nitrate, suspended sediment, and turbidity. Higher dissolved oxygen concentrations and pH were measured at the upstream site (Snake River near Adrian) than the downstream site (Snake River at Nyssa). Contributions from the Boise River measured at Parma do not constitute all of the increase in nutrient and sediment loads in the Snake River between the upstream and downstream sites. Surrogate models were developed using a combination of continuously monitored variables to estimate concentrations of nutrients and suspended sediment when samples were not possible. The surrogate models explained from 66 to 95 percent of the variability in nutrient and suspended sediment concentrations, depending on the site and model. Although the surrogate models could not always represent event-based changes in modeled parameters, they generally were successful in representing seasonal and annual patterns. Over a longer period, the surrogate models could be a useful tool for measuring compliance with state and site-specific water-quality standards and TMDL targets, for representing daily and seasonal variability in constituents, and for assessing effects of phosphorus reduction measures within the watershed.

Idaho↗

USGS2011

Assessing controls on perched saturated zones beneath the Idaho Nuclear Technology and Engineering Center, Idaho

Waste byproducts associated with operations at the Idaho Nuclear Technology and Engineering Center (INTEC) have the potential to contaminate the eastern Snake River Plain (ESRP) aquifer. Recharge to the ESRP aquifer is controlled largely by the alternating stratigraphy of fractured volcanic rocks and sedimentary interbeds within the overlying vadose zone and by the availability of water at the surface. Beneath the INTEC facilities, localized zones of saturation perched on the sedimentary interbeds are of particular concern because they may facilitate accelerated transport of contaminants. The sources and timing of natural and anthropogenic recharge to the perched zones are poorly understood. Simple approaches for quantitative characterization of this complex, variably saturated flow system are needed to assess potential scenarios for contaminant transport under alternative remediation strategies. During 2009-2011, the U.S. Geological Survey (USGS), in cooperation with the U.S. Department of Energy, employed data analysis and numerical simulations with a recently developed model of preferential flow to evaluate the sources and quantity of recharge to the perched zones. Piezometer, tensiometer, temperature, precipitation, and stream-discharge data were analyzed, with particular focus on the possibility of contributions to the perched zones from snowmelt and flow in the neighboring Big Lost River (BLR). Analysis of the timing and magnitude of subsurface dynamics indicate that streamflow provides local recharge to the shallow, intermediate, and deep perched saturated zones within 150 m of the BLR; at greater distances from the BLR the influence of streamflow on recharge is unclear. Perched water-level dynamics in most wells analyzed are consistent with findings from previous geochemical analyses, which suggest that a combination of annual snowmelt and anthropogenic sources (for example, leaky pipes and drainage ditches) contribute to recharge of shallow and intermediate perched zones throughout much of INTEC. The source-responsive fluxes model was parameterized to simulate recharge via preferential flow associated with intermittent episodes of streamflow in the BLR. The simulations correspond reasonably well to the observed hydrologic response within the shallow perched zone. Good model performance indicates that source-responsive flow through a limited number of connected fractures contributes substantially to the perched-zone dynamics. The agreement between simulated and observed perched-zone dynamics suggest that the source-responsive fluxes model can provide a valuable tool for quantifying rapid preferential flow processes that may result from different land management scenarios.

Scientific Investigations Report↗

USGS2011

Aeolian nutrient fluxes following wildfire in sagebrush steppe: Implications for soil carbon storage

. Pulses of aeolian transport following fire can profoundly affect the biogeochemical cycling of nutrients in semi-arid and arid ecosystems. Our objective was to determine horizontal nutrient fluxes occurring in the saltation zone during an episodic pulse of aeolian transport that occurred following a wildfire in a semi-arid sagebrush steppe ecosystem in southern Idaho, USA. We also examined how temporal trends in nutrient fluxes were affected by changes in particle sizes of eroded mass as well as nutrient concentrations associated with different particle size classes. In the burned area, total carbon (C) and nitrogen (N) fluxes were as high as 235 g Cm -1 d -1 and 19 g N m -1 d -1 during the first few months following fire, whereas C and N fluxes were negligible in an adjacent unburned area throughout the study. Temporal variation in C and N fluxes following fire was largely attributable to the redistribution of saltation-sized particles. Total N and organic C concentrations in the soil surface were significantly lower in the burned relative to the unburned area one year after fire. Our results show how an episodic pulse of aeolian transport following fire can affect the spatial distribution of soil C and N, which, in turn, can have important implications for soil C storage. These findings demonstrate how an ecological disturbance can exacerbate a geomorphic process and highlight the need for further research to better understand the role aeolian transport plays in the biogeochemical cycling of C and N in recently burned landscapes.

Idaho↗

USGS2011

Ranavirus outbreaks in amphibian populations of northern Idaho

Ranavirus outbreaks, caused by pathogens in the genus Ranavirus (Family Iridoviridae), were the largest single cause of reported amphibian mass mortality events in the United States from 1996–2001 (Green et al. 2002). Mortality events associated with ranaviruses have been documented on five continents and throughout the latitudes and elevations where amphibians occur (Gray et al. 2009). However, the threat of ranaviruses to amphibian and reptile populations in specific regions is still largely unknown (Chinchar 2002; Gray et al. 2009).

Idaho↗

USGS2011

Chapter 39 The Edwardsburg Formation and related rocks, Windermere Supergroup, central Idaho, USA

In central Idaho, Neoproterozoic stratified rocks are engulfed by the Late Cretaceous Idaho batholith and by Eocene volcanic and plutonic rocks of the Challis event. Studied sections in the Gospel Peaks and Big Creek areas of west-central Idaho are in roof pendants of the Idaho batholith. A drill core section studied from near Challis, east-central Idaho, lies beneath the Challis Volcanic Group and is not exposed at the surface. Metamorphic and deformational overprinting, as well as widespread dismembering by the younger igneous rocks, conceals many primary details. Despite this, these rocks provide important links for regional correlations and have produced critical geochronological data for two Neoproterozoic glacial periods in the North American Cordillera. At the base of the section, the more than 700-m-thick Edwardsburg Formation (Fm.) contains interlayered diamictite and volcanic rocks. There are two diamictite-bearing members in the Edwardsburg Fm. that are closely related in time. Each of the diamictites is associated with intermediate composition tuff or flow rocks and the diamictites are separated by mafic volcanic rocks. SHRIMP U–Pb dating indicates that the lower diamictite is about 685±7 Ma, whereas the upper diamictite is 684±4 Ma. The diamictite units are part of a cycle of rocks from coarse clastic, to fine clastic, to carbonate rocks that, by correlation to better preserved sections, are thought to record an older Cryogenian glacial to interglacial period in the northern US Cordillera. The more than 75-m-thick diamictite of Daugherty Gulch is dated at 664±6 Ma. This unit is preserved only in drill core and the palaeoenvironmental interpretation and local stratigraphic relations are non-unique. Thus, the date for this diamictite may provide a date for a newly recognized glaciogenic horizon or may be a minimum age for the diamictite in the Edwardsburg Fm. The c. 1000-m-thick Moores Lake Fm. is an amphibolite facies diamictite in which glacial features have not been observed. However, it is part of a sedimentary cycle from unsorted siliclastic deposits to mud and carbonate deposits. Using lithostratigraphy and available geochronology, the Moores Lake Fm. is correlated with a younger succession of Cryogenian glaciogenic rocks in southeastern Idaho. Traditional correlations of Neoproterozoic rocks in the Cordillera recognize two levels of Cryogenian diamictites. The Edwardsburg and Moores Lake diamictites along the middle Cordillera fit well into the scenario of two glacial events. Because of the correlations, dates that provide ages for the diamictites in central Idaho (and corroborated in southeastern Idaho, Link & Fanning 2008) could constrain the age of correlated glaciogenic deposits elsewhere in the Cordillera. However, in the absence of dates for the glaciogenic diamictites in Canadian and southern US Cordilleran sections, the correlations are considered possible but uncertain.

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USGS2011

Hotspot: The Snake River geothermal drilling project - An overview

The Snake River volcanic province (SRP) overlies a thermal anomaly that extends deep into the mantle; it represents one of the highest heat flow provinces in North America, and an area with the highest calculated geothermal gradients. This makes the SRP one of the potentially highest producing geothermal districts in the United States. Elevated heat flow is typically highest along the margins of the topographic Snake River Plain and lowest along the axis of the plain, where thermal gradients are suppressed by the Snake River aquifer. Beneath this aquifer, however, thermal gradients rise again and may tap even higher heat flows associated with the intrusion of mafic magmas into a geophysically-imaged mid-crustal sill complex. The primary goal of this project is to evaluate geothermal potential in three distinct settings: (1) the high sub-aquifer geothermal gradient associated with the intrusion of mafic magmas and the release of crustal fluids from the associated wall rocks, (2) the valley-margin settings where surface heat flow may be driven by the up-flow of hot fluids along buried caldera ring-fault complexes, and (3) a more traditional fault-bounded basin with thick sedimentary cover. All settings are found within the central or western Snake River Plain and represent previously untested targets for geothermal exploration. Our first drill site tests the extent of geothermal resources along the axis of the plain, beneath the Snake River aquifer, in an area where elevated groundwater temperatures imply a significant flux of conductive or advective heat flow from below. Our second drill site assesses the geothermal potential of up-flow zones along a buried caldera margin, in an area of known geothermal potential (Twin Falls geothermal district). Further studies will include seismic reflection-refraction surveys, gravity-magnetic surveys, and downhole geophysical logs.

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USGS2010

Developmental toxicity of lead-contaminated sediment in Canada geese (Branta canadensis)

Sediment ingestion has recently been identified as an important exposure route for toxicants in waterfowl. The effects of lead-contaminated sediment from the Coeur d'Alene River Basin (CDARB) in Idaho on posthatching development of Canada geese (Branta canadensis) were examined for 6 wk. Day-old goslings received either untreated control diet, clean sediment (48%) supplemented control diet, or CDARB sediment (3449 mug/g lead) supplemented diets at 12%, 24%, or 48%. The 12% CDARB diet resulted in a geometric mean blood lead concentration of 0.68 ppm (ww), with over 90% depression of red blood cell ALAD activity and over fourfold elevation of free erythrocyte protoporphyrin concentration. The 24% CDARB diet resulted in blood lead of 1.61 ppm with decreased hematocrit, hemoglobin, and plasma protein in addition to the effects just described. The 48% CDARB diet resulted in blood lead of 2.52 ppm with 22% mortality, decreased growth, and elevated plasma lactate dehydrogenase-L (LDH-L) activity. In this group the liver lead concentration was 6.57 ppm (ww), with twofold increases in hepatic lipid peroxidation (thiobarbituric acid-reactive substances, TBARS) and in reduced glutathione concentration; associated effects included elevated glutathione reductase activity but lower protein-bound thiols concentration and glucose-6-phosphate dehydrogenase (G-6-PDH) activity. The kidney lead concentration in this group was 14.93 ppm with subacute renal tubular nephrosis in one of the surviving goslings. Three other geese in this treatment group exhibited calcified areas of marrow, and one of these displayed severe chronic fibrosing pancreatitis. Lead from CDARB sediment accumulated less readily in gosling blood and tissues than reported in ducklings but at given concentrations was generally more toxic to goslings. Many of these effects were similar to those reported in wild geese and mallards within the Coeur d'Alene River Basin.

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USGS2010

Landscape genetics of high mountain frog metapopulations

Explaining functional connectivity among occupied habitats is crucial for understanding metapopulation dynamics and species ecology. Landscape genetics has primarily focused on elucidating how ecological features between observations influence gene flow. Functional connectivity, however, may be the result of both these between‐site (landscape resistance) landscape characteristics and at‐site (patch quality) landscape processes that can be captured using network based models. We test hypotheses of functional connectivity that include both between‐site and at‐site landscape processes in metapopulations of Columbia spotted frogs ( Rana luteiventris ) by employing a novel justification of gravity models for landscape genetics (eight microsatellite loci, 37 sites, n = 441). Primarily used in transportation and economic geography, gravity models are a unique approach as flow (e.g. gene flow) is explained as a function of three basic components: distance between sites, production/attraction (e.g. at‐site landscape process) and resistance (e.g. between‐site landscape process). The study system contains a network of nutrient poor high mountain lakes where we hypothesized a short growing season and complex topography between sites limit R. luteiventris gene flow. In addition, we hypothesized production of offspring is limited by breeding site characteristics such as the introduction of predatory fish and inherent site productivity. We found that R. luteiventris connectivity was negatively correlated with distance between sites, presence of predatory fish (at‐site) and topographic complexity (between‐site). Conversely, site productivity (as measured by heat load index, at‐site) and growing season (as measured by frost‐free period between‐sites) were positively correlated with gene flow. The negative effect of predation and positive effect of site productivity, in concert with bottleneck tests, support the presence of source–sink dynamics. In conclusion, gravity models provide a powerful new modelling approach for examining a wide range of both basic and applied questions in landscape genetics.

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