Search USGS⌕ Search

Geology topics

Robert N. Fisher

Publications and source records attributed to Robert N. Fisher.

At least 73 records · Page 4Linked to original sources
USGS2022

Eimeria albigulae (Apicomplexa: Eimeriidae): New host and distributional record from the Bryant's woodrat, Neotoma bryanti (Rodentia: Cricetidae), from California, U.S.A.

Fecal samples, collected in July 2020 and April–May 2021 from 17 Bryant's woodrats, Neotoma bryanti Merriam, from 3 sites in San Diego, Orange, and San Bernardino counties, California, were examined for coccidial parasites. Three of 8 (38%) woodrats from a single site in San Diego County were found to be passing oocysts of Eimeria albigulae Levine, Ivens, and Kruidenier, 1957. Subspheroidal oocysts measured (average length [L] × width [W]) 23.5 × 21.4 µm with an average L/W ratio of 1.1. A micropyle was absent, but an oocyst residuum as well as a single polar granule was present. Ovoidal sporocysts measured (average L × W) 10.1 × 7.5 µm with an L/W ratio average of 1.4. A nipple-like Stieda body was present, but sub-Stieda and para-Stieda bodies were absent. The sporocyst residuum was composed of loosely packed granules between and around the sporozoites. This woodrat represents the sixth host to harbor this coccidian. We document a new host as well as a geographic distribution record for E. albigulae .

California↗
USGS2022

Research to inform passage spacing for migratory amphibians and to evaluate efficacy and designs for open elevated road segment (ERS) passages

This is a multifaceted project that includes three main areas of research targeted to inform effective crossing systems for migratory amphibians, a large group of species which are at very high risk from negative impacts from roads within their habitats (Glista et al. 2008, Hamer and McDonnell 2008, Semlitsch 2008, Brehme et al. 2018). The three projects presented in this report are: 1) Movement distances along road barrier fencing and probabilities of reaching a passage: Case study with Yosemite toads in Sierra National Forest, CA. 2) Effectiveness of a novel elevated road segment (ERS) road passage system prototype in providing connectivity for amphibians, reptiles, and small mammals: Case study in Sierra National Forest, CA. 3) Concept designs and transportation engineering evaluation for the ERS on primary roads and highways. This research began in 2018 as part of a larger U.S. Geological Survey (USGS) research program in collaboration with the U.S. Forest Service (USFS), California Department of Transportation (Caltrans), and Western Transportation Institute (WTI; Montana State University) to inform best management practices for barrier and crossing systems for sensitive amphibians and reptiles in California (Langton and Clevenger 2021, Brehme and Fisher 2020). The funding from Department of Transportation (DOT) pooled fund partners (Parks Canada / Government of Canada, Federal Highway Administration (FHWA), U.S. State Departments of Transportation (AK, AZ, CA, CO, IA, MI, MN, NM, NV, OR, WA), Ontario Ministry of Transportation) and managed by the Nevada Department of Transportation (NDOT) supported 2021 field study efforts, analyses of fence movement distances for Yosemite toads, and analysis of the efficacy of a novel ERS passage system to Yosemite toads and other amphibians, reptiles and small mammals. Finally, this pooled fund project includes an assessment by transportation engineers in consultation with USGS and Caltrans to provide insight, guidance, and concept designs for similar crossing solutions that could be implemented on improved roads. This research is meant to inform the distances required between crossings to provide permeability for migratory amphibians (i.e., to allow movements necessary for population persistence across roads) as well as to assess the permeability of a new passage design for amphibians and other small animal species that may provide greater connectivity and offer an alternative to below grade tunnels. The results of these studies add to the current body of knowledge in road ecology and increase the choices of road passage designs for amphibians and other small wildlife species.

California↗
USGS2021

Impacts of a non-indigenous ecosystem engineer, the American beaver (Castor canadensis), in a biodiversity hotspot

Non-native species having high per capita impacts in invaded communities are those that modulate resource availability and alter disturbance regimes in ways that are biologically incompatible with the native biota. In areas where it has been introduced by humans, American beaver ( Castor canadensis ) is an iconic example of such species due to its capacity to alter trophic dynamics of entire ecosystems and create new invasional pathways for other non-native species. The species is problematic in several watersheds within the Southern California-Northern Baja California Coast Ecoregion, a recognized hotspot of biodiversity, due to its ability to modify habitat in ways that favor invasive predators and competitors over the region's native species and habitat. Beaver was deliberately introduced across California in the mid-1900s and generally accepted as non-native to the region up to the early 2000s; however, articles promoting the idea that beaver may be a natural resident have gained traction in recent years, due in large part to the species' charismatic nature rather than by presentation of sound evidence. Here, we discuss the problems associated with beaver disturbance and its effects on conserving the region's native fauna and flora. We refute arguments underlying the claim that beaver is native to the region, and review paleontological, zooarchaeological, and historical survey data from renowned field biologists and naturalists over the past ~160 years to show that no evidence exists that beaver arrived by any means other than deliberate human introduction. Managing this ecosystem engineer has potential to reduce the richness and abundance of other non-native species because the novel, engineered habitat now supporting these species would diminish in beaver-occupied watersheds. At the same time, hydrologic functionality would shift toward more natural, ephemeral conditions that favor the regions' native species while suppressing the dominance of the most insidious invaders.

California↗
USGS2021

Reproductive plasticity as an advantage of snakes during island invasion

Most invasive species are not studied during their initial colonization of ecosystems to which they were recently introduced. Rather, research is typically performed after invasive species are well established and causing harm to the native biodiversity. Thus, novel adaptations of invasive species during their initial invasions are rarely identified. The California kingsnake ( Lampropeltis californiae ) is an invasive species in the Canary Islands that originated via escape or release from captive populations. Previous studies have demonstrated several morphological differences between the native California population and the invasive populations on Gran Canaria Island, particularly in regard to color pattern and body mass. In this study, we assessed the reproductive condition of 1,538 museum specimens of L. californiae from the native range, and 668 from Gran Canaria. Our results show that 57.1% of female L. californiae from Gran Canaria were gravid versus 13.4% of those from California. Moreover, average follicle size and clutch size were both greater in the invasive range (20.3 and 65%). In addition, there was a marked phenological shift in the invasive populations, among which follicles appeared 60 days sooner than in the native range. These differences can possibly be attributed to a larger body mass in the invasive populations, a lack of interspecific competition, origination from the pet trade, increased selection for large clutch sizes, and/or increased climate suitability in the invaded habitats. Overall, these reproductive and phenological attributes appear to constitute advantages for L. californiae during the invasion of this newly encountered ecosystem. The phenomenon of reproductive plasticity might generally be advantageous for rapid irruption of snakes on islands.

Conservation Science and Practice↗
USGS2021

Range eclipse leads to tenuous survival of a rare lizard species on a barrier atoll

Rediscovery of living populations of a species that was presumed to be extirpated can generate new narratives for conservation in areas suffering from losses in biodiversity. We used field observations and DNA sequence data to verify the rediscovery of the Critically Endangered scincid lizard Emoia slevini on Dåno′, an islet off the coast of Guam in the southern Mariana Islands, where for > 20 years it had been considered possibly extirpated. Endemic to the Marianas, E. slevini has declined throughout its range and no longer occurs on as many as five islands from which it was historically known, most likely because of interactions with invasive species and loss of native forest. Our results show that individuals from Dåno′, the type locality for E. slevini , are genetically similar but not identical to E. slevini on Sarigan and Alamagan to the north, and that E. slevini is a close evolutionary relative to another congener in the southern Marianas that is currently recognized as E moia atrocostata but probably represents an undescribed species in this archipelago. We also show that other, more broadly distributed species of Emoia occurring on Dåno′ are distant relatives to E. slevini and the Mariana lineage of E. atrocostata , providing further evidence of the distinctiveness of these taxa. The rediscovery of E. slevini on Dåno′ following rodent eradication and culling of a population of monitor lizards suggests that management of invasive species is key to the recovery of this skink in the Mariana Islands, and that a range eclipse on the larger neighbouring island of Guam best explains why the rediscovery took place at the periphery of the species’ historic range. A Chamorro abstract can be found in the supplementary material.

Dåno′, Guam↗
USGS2021

Conservation of northwestern and southwestern pond turtles: Threats, population size estimates, and population viability analysis

Accurate status assessments of long-lived, widely distributed taxa depend on the availability of long-term monitoring data from multiple populations. However, monitoring populations across large temporal and spatial scales is often beyond the scope of any one researcher or research group. Consequently, wildlife managers may be tasked with utilizing limited information from different sources to detect range-wide evidence of population declines and their causes. When assessments need to be made under such constraints, the research and management communities must determine how to extrapolate from variable population data to species-level inferences. Here, using three different approaches, we integrate and analyze data from the peer-reviewed literature and government agency reports to inform conservation for northwestern pond turtles (NPT) Actinemys marmorata and southwestern pond turtles (SPT) Actinemys pallida . Both NPT and SPT are long-lived freshwater turtles distributed along the west coast of the United States and Mexico. Conservation concerns exist for both species; however, SPT may face more severe threats and are thought to exist at lower densities throughout their range than NPT. For each species, we ranked the impacts of 13 potential threats, estimated population sizes, and modeled population viability with and without long-term droughts. Our results suggest that predation of hatchlings by invasive predators, such as American bullfrogs Lithobates catesbeianus and Largemouth Bass Micropterus salmoides, is a high-ranking threat for NPT and SPT. Southwestern pond turtles may also face more severe impacts associated with natural disasters (droughts, wildfires, and floods) than do NPT. Population size estimates from trapping surveys indicate that SPT have smaller population sizes on average than do NPT ( P = 0.0003), suggesting they may be at greater risk of local extirpation. Population viability analysis models revealed that long-term droughts are a key environmental parameter; as the frequency of severe droughts increases with climate change, the likelihood of population recovery decreases, especially when census sizes are low. Given current population trends and vulnerability to natural disasters throughout their range, we suggest that conservation and recovery actions first focus on SPT to prevent further population declines.

Journal of Fish and Wildlife Management↗
USGS2021

Conservation implications of spatiotemporal variation in the terrestrial ecology of Western spadefoots

Conservation of species reliant on ephemeral resources can be especially challenging in the face of a changing climate. Western spadefoots ( Spea hammondii ) are small burrowing anurans that breed in ephemeral pools, but adults spend the majority of their lives underground in adjacent terrestrial habitat. Western spadefoots are of conservation concern throughout their range because of habitat loss, but little is known about the activity patterns and ecology of their terrestrial life stage. We conducted a radio-telemetry study of adult western spadefoots at 2 sites in southern California, USA, from December 2018 to November 2019 to characterize their survival, behavior, and movements from breeding through aestivation to refine conservation and management for the species. Western spadefoot survival varied seasonally, with risk of mortality higher in the active season than during aestivation. The probability of movement between successive observations was higher during the winter and spring and when atmospheric moisture was high and soil water content at 10-cm depth was low. The amount of rain between observations had the strongest effect on the probability of movement between observations; for every 20 mm of rainfall between observations, western spadefoots were 2.4 times more likely to move. When movements occurred, movement rates were highest when both relative humidity and soil water content at 10-cm depth were high. The conditions under which western spadefoots were likely active on the surface, likely to have moved, and moved at the highest rates are conditions that reduce the risk of desiccation of surface-active spadefoots. Western spadefoot home range areas varied between study sites and were mostly <1 ha, although 1 individual's home range area was >6 ha. Western spadefoots rapidly dispersed from the breeding pools, and asymptotic distances from the breeding pool were generally reached by June. The asymptotic distance from the breeding pool varied between sites, with the 95th percentile of the posterior predictive distribution reaching 486 m at 1 site and 187 m at the other. Western spadefoots did not select most habitat components disproportionately to their availability, but at Crystal Cove State Park, they avoided most evaluated vegetation types (graminoids, forbs, and shrubs). Spatial variation was evident in most evaluated western spadefoot behaviors; context-dependent behavior suggests that site-specific management is likely necessary for western spadefoots. Furthermore, comparison with an earlier study of western spadefoots at Crystal Cove State Park indicated substantial temporal variation in western spadefoot behavior. Therefore, basing management decisions on short-term studies might fail to meet conservation objectives. Better understanding the influences of spatial context and climatic variation on western spadefoot behavior will improve conservation efforts for this species.

California↗
USGS2021

Who’s your daddy? On the identity and distribution of the paternal hybrid ancestor of the parthenogenetic gecko Lepidodactylus lugubris (Reptilia: Squamata: Gekkonidae)

The widespread parthenogenetic gecko Lepidodactylus lugubris is comprised of several clonal lineages, at least one of which has been known for some time to have originated from hybridization between its maternal ancestor, Lepidodactylus moestus , and a putatively undescribed paternal ancestor previously known only from remote islands in the Central Pacific. By integrating new genetic sequences from multiple studies on Lepidodactylus and incorporating new genetic sequences from previously sampled populations, we recovered a phylogenetic tree that shows a close genetic similarity between the generally hypothesized paternal hybrid ancestor and a recently described species from Maluku (Indonesia), Lepidodactylus pantai . Our results suggest that the paternal hybrid ancestor of at least one parthenogenetic clone of L. lugubris is conspecific with L. pantai and that the range of this species extends to Palau, the Caroline Islands, the Kei Islands, Wagabu, and potentially other small islands near New Guinea. Deeper genetic structure in the western (Palau, Maluku) versus eastern (eastern Melanesia, Micronesia, Polynesia) part of this species’ range suggests that the western populations likely dispersed via natural colonization, whereas the eastern populations may be the result of human-mediated dispersal. The potential taxonomic affinities and biogeographic history should be confirmed with further morphological and genetic analyses, including research on L. woodfordi from its type locality, which would have nomenclatural priority if found to be conspecific with L. pantai . We recommend referring to the wide-ranging sexual species as Lepidodactylus pantai until such a comparison can be made.

Zootaxa↗
USGS2021

Linking behavioral states to landscape features for improved conservation management

A central theme for conservation is understanding how animals differentially use, and are affected by change in, the landscapes they inhabit. However, it has been challenging to develop conservation schemes for habitat-specific behaviors. Here we use behavioral change point analysis to identify behavioral states of golden eagles ( Aquila chrysaetos ) in the Sonoran and Mojave Deserts of the southwestern United States, and we identify, for each behavioral state, conservation-relevant habitat associations. We modeled behavior using 186,859 GPS points from 48 eagles and identified 2,851 distinct segments comprising four behavioral states. Altitude above ground level (AGL) best differentiated behavioral states, with two clusters of short-distance movement behaviors characterized by low AGL (state 1 AGL = 14 m (median); state 2 AGL = 11 m) and two associated with longer-distance movement behaviors and characterized by higher AGL (state 3 AGL = 108 m; state 4 AGL = 450 m). Behaviors such as perching and low-altitude hunting were associated with short-distance movements in updraft-poor environments, at higher elevations, and over steeper and more north-facing terrain. In contrast, medium-distance movements such as hunting and transiting were over gentle and south-facing slopes. Long-distance transiting occurred over the desert habitats that generate the best updraft. This information can guide management of this species, and our approach provides a template for behavior-specific habitat associations for other species of management concern.

California↗
USGS2021

Western pond turtles in the Mojave Desert? A review of their past, present, and possible future

= The western pond turtle ( WPT ) was formerly considered a single species ( Actinemys or Emys marmorata ) that ranged from southern British Columbia, Canada to Baja California, México. More recently it was divided into a northern and a southern species. WPTs are found primarily in streams that drain into the Pacific Ocean, although scattered populations exist in endorheic drainages of the Great Basin and Mojave deserts. Populations in the Mojave Desert were long thought to be restricted to the Mojave River, but recently another population was documented in Piute Ponds, a terminal wetland complex associated with Amargosa Creek on Edwards Air Force Base. WPT fossils in the Mojave Desert are known from the Miocene to the Pleistocene. Recently, Pleistocene fossils have been found as far into the desert as Salt Springs, just south of Death Valley. The oldest fossil records suggest that WPTs were present in wetlands and drainages of the geological feature known as the Mojave block prior to the uplift of the Sierra Nevada Range about 8 Ma and prior to the ~ 3 Ma uplift of the Transverse Ranges. Archaeological records document use of turtles by Native Americans for food and cultural purposes 1,000 or more years ago at the Cronese Lakes on the lower Mojave River and Oro Grande on the upper river. The first modern publication documenting their presence in the Mojave River was 1861. Museum specimens were collected as early as 1937. These fossil and early literature records support the indigenous status of WPTs to the Mojave River. However, mtDNA -based genetic evidence shows that Mojave River turtles share an identical haplotype with turtles on the California coast. Limited nuclear data show some minor differences. Overdraft of water from the Mojave River for municipal and agricultural uses, urban development, and saltcedar expansion are threats to the continued survival of WPTs in the Mojave River.

California, Nevada↗
USGS2021

Gut microbial ecology of the Critically Endangered Fijian crested iguana (Brachylophus vitiensis): Effects of captivity status and host reintroduction on endogenous microbiomes

Animals often exhibit distinct microbial communities when maintained in captivity as compared to when in the wild. Such differentiation may be significant in headstart and reintroduction programs where individuals spend some time in captivity before release into native habitats. Using 16S rRNA gene sequencing, we (i) assessed differences in gut microbial communities between captive and wild Fijian crested iguanas ( Brachylophus vitiensis ) and (ii) resampled gut microbiota in captive iguanas released onto a native island to monitor microbiome restructuring in the wild. We used both cloacal swabs and fecal samples to further increase our understanding of gut microbial ecology in this IUCN Critically Endangered species. We found significant differentiation in gut microbial community composition and structure between captive and wild iguanas in both sampling schemes. Approximately two months postrelease, microbial communities in cloacal samples from formerly captive iguanas closely resembled wild counterparts. Interestingly, microbial communities in fecal samples from these individuals remained significantly distinct from wild conspecifics. Our results indicate that captive upbringings can lead to differences in microbial assemblages in headstart iguanas as compared to wild individuals even after host reintroduction into native conditions. This investigation highlights the necessity of continuous monitoring of reintroduced animals in the wild to ensure successful acclimatization and release.

Ecology and Evolution↗
USGS2021

Multi-taxa database data dictionary

The conservation of biological resources relies on the successful management of ecological and physiological research data. The Western Ecological Research Center of the U.S. Geological Survey is working with researchers, land managers, and decision makers from non-government organizations and city, county, state, and federal resource agencies to develop data management methods. Access to the most current and applicable research data available in making sound decisions to conserve species diversity is foundational. We sought to accomplish several goals in developing the data management strategy used in the Multi-Taxa database. Data persistence and availability are primary goals of well-developed databases. By documenting and sharing the structure and definitions of Multi-Taxa database, we hope to further the successful management of these crucial data.

Techniques and Methods↗
USGS2021

Conservation genomics of the threatened western spadefoot, Spea hammondii, in urbanized southern California

Populations of the western spadefoot ( Spea hammondii ) in southern California occur in one of the most urbanized and fragmented landscapes on the planet and have lost up to 80% of their native habitat. Orange County is one of the last strongholds for this pond-breeding amphibian in the region, and ongoing restoration efforts targeting S. hammondii have involved habitat protection and the construction of artificial breeding ponds. These efforts have successfully increased breeding activity, but genetic characterization of the populations, including estimates of effective population size and admixture between the gene pools of constructed artificial and natural ponds, has never been undertaken. Using thousands of genome-wide single-nucleotide polymorphisms, we characterized the population structure, genetic diversity, and genetic connectivity of spadefoots in Orange County to guide ongoing and future management efforts. We identified at least two, and possibly three major genetic clusters, with additional substructure within clusters indicating that individual ponds are often genetically distinct. Estimates of landscape resistance suggest that ponds on either side of the Los Angeles Basin were likely interconnected historically but intense urban development has rendered them essentially isolated, and the resulting risk of interruption to natural metapopulation dynamics appears to be high. Resistance surfaces show that the existing artificial ponds were well-placed and connected to natural populations by low-resistance corridors. Toad samples from all ponds (natural and artificial) returned extremely low estimates of effective population size, possibly due to a bottleneck caused by a recent multi-year drought. Management efforts should focus on maintaining gene flow among natural and artificial ponds by both assisted migration and construction of new ponds to bolster the existing pond network in the region.

California↗
USGS2021

Responses of migratory amphibians to barrier fencing inform the spacing of road underpasses: A case study with California tiger salamanders (Ambystoma californiense) in Stanford, CA, USA

Migratory amphibians are at high risk of negative impacts when roads intersect their upland and breeding habitats. Road mortality can reduce population abundance, survivorship, breeding, recruitment, and probability of long-term persistence. Increasingly, environmental planners recommend installation of under-road tunnels with barrier fencing to reduce mortality and direct amphibians towards the passages. Often, the permeability of these barrier and passage systems to amphibian population movements are unknown. We studied the movements of California tiger salamanders (CTS: Ambystoma californiense ) in relation to solid and mesh barrier fencing attached to a 3-tunnel system between upland and breeding habitats in Stanford, California. We deployed active-trigger cameras along the fencing, used pattern recognition software to identify individuals by their unique spot patterns, and calculated individual salamander movement distances, speed, direction changes, and “success” at reaching the tunnel system. We found that migrating adult CTS moved an average of 40 m along barrier fencing before turning back into the habitat or “giving-up”. This short distance, in comparison to long migratory movements, may be explained by the orientation mechanisms salamanders use to reach their breeding sites. The probability CTS found a passage decreased rapidly with increasing distance from the tunnel system, particularly if individuals turned the “wrong” way after encountering the fence. Salamanders changed directions more often and spent more time along mesh fencing. Our results suggest that a maximum of 12.5 m between passages along CTS migration routes should allow approximately 90% of adult salamanders to encounter road crossings. Additionally, use of solid fencing or a visual barrier on mesh fencing may help to lead salamanders to passages most efficiently. These considerations can assist those seeking to design effective road mitigation for CTS and other migratory amphibians.

California↗
USGS2021

Could climate change benefit invasive snakes? Modelling the potential distribution of the California Kingsnake in the Canary Islands

The interaction between climate change and biological invasions is a global conservation challenge with major consequences for invasive species management. However, our understanding of this interaction has substantial knowledge gaps; this is particularly relevant for invasive snakes on islands because they can be a serious threat to island ecosystems. Here we evaluated the potential influence of climate change on the distribution of invasive snakes on islands, using the invasion of the California kingsnake ( Lampropeltis californiae ) in Gran Canaria. We analysed the potential distribution of L. californiae under current and future climatic conditions in the Canary Islands, with the underlying hypothesis that the archipelago might be suitable for the species under these climate scenarios. Our results indicate that the Canary Islands are currently highly suitable for the invasive snake, with increased suitability under the climate change scenarios tested here. This study supports the idea that invasive reptiles represent a substantial threat to near-tropical regions, and builds on previous studies suggesting that the menace of invasive reptiles may persist or even be exacerbated by climate change. We suggest future research should continue to fill the knowledge gap regarding invasive reptiles, in particular snakes, to clarify their potential future impacts on global biodiversity.

Journal of Environmental Management↗
USGS2021

The influence of species life history and distribution characteristics on species responses to habitat fragmentation in an urban landscape

Fragmentation within urbanized environments often leads to a loss of native species diversity; however, variation exists in responses among-species and among-populations within species. We aimed to identify patterns in species biogeography in an urbanized landscape to understand anthropogenic effects on vertebrate communities and identify species that are more sensitive or resilient to landscape change. We investigated patterns in species richness and species responses to fragmentation in southern Californian small vertebrate communities using multispecies occupancy models and determined factors associated with overall commonness and sensitivity to patch size for 45 small vertebrate species both among and within remaining non-developed patches. In general, smaller patches had fewer species, with amphibian species richness being particularly sensitive to patch size effects. Mammals were generally more common, occurring both in a greater proportion of patches and a higher proportion of the sites within occupied patches. Alternatively, amphibians were generally restricted to larger patches but were more ubiquitous within smaller patches when occupied. Species range size was positively correlated with how common a species was across and within patches, even when controlling for only patches that fell within a species' range. We found sensitivity to patch size was greater for more fecund species and depended on where the patch occurred within a species' range. While all taxa were more likely to occur in patches in the warmer portions of their ranges, amphibians and mammals were more sensitive to fragmentation in these warmer areas as compared to the rest of their ranges. Similarly, amphibians occurred at a smaller proportion of sites within patches in drier portions of their ranges. Mammals occurred at a higher proportion of sites that were also in drier portions of their range while reptiles did not differ in their sensitivity to patch size by range position. We demonstrate that taxonomy, life history, range size and range position can predict commonness and sensitivity of species across this highly fragmented yet biodiverse landscape. The impacts of fragmentation on species communities within an urban landscape depend on scale, with differences emerging among and within species and populations.

California↗
USGS2021

Reptile and amphibian diversity and abundance in an urban landscape: Impacts of fragmentation and the conservation value of small patches

Urbanization is a major contributor to habitat loss and fragmentation and is considered a global threat to biodiversity. We studied reptile and amphibian species diversity and abundance in a highly fragmented landscape adjacent to the second largest metropolitan area in the United States. Habitat patches in our study area were made up of remnant native vegetation surrounded by roads, housing, and other urban development. Species richness and diversity were positively associated with patch size, but patch age was not significantly associated with community characteristics. Four relatively common species were not detected in the small patches, indicating the possibility they had been extirpated by the time monitoring began, and six rarer species were not detected or detected only once in these patches. Although the patch size effect on species diversity was strong, we found that several of the small habitat patches had similar diversity to large patches, indicating potential value of these small habitat patches in protecting species as “microreserves.” In addition, one lizard species was found to be significantly more abundant in the smaller patches. To determine if abundance changed over time, we compared capture rates for four common lizards at the same sites ten years later. For three of the four species, abundance decreased over that period, specifically in the small patches. Although our long-term monitoring has confirmed that the full suite of herpetofauna is currently preserved in the study area overall, declines even in the common species over time hint at the potential severity of the threat of urbanization to rare species.

California↗