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Robert N. Fisher

Publications and source records attributed to Robert N. Fisher.

At least 55 records · Page 3Linked to original sources

Harnessing island–ocean connections to maximize marine benefits of island conservation

Islands support unique plants, animals, and human societies found nowhere else on the Earth. Local and global stressors threaten the persistence of island ecosystems, with invasive species being among the most damaging, yet solvable, stressors. While the threat of invasive terrestrial mammals on island flora and fauna is well recognized, recent studies have begun to illustrate their extended and destructive impacts on adjacent marine environments. Eradication of invasive mammals and restoration of native biota are promising tools to address both island and ocean management goals. The magnitude of the marine benefits of island restoration, however, is unlikely to be consistent across the globe. We propose a list of six environmental characteristics most likely to affect the strength of land–sea linkages: precipitation, elevation, vegetation cover, soil hydrology, oceanographic productivity, and wave energy. Global databases allow for the calculation of comparable metrics describing each environmental character across islands. Such metrics can be used today to evaluate relative potential for coupled land–sea conservation efforts and, with sustained investment in monitoring on land and sea, can be used in the future to refine science-based planning tools for integrated land–sea management. As conservation practitioners work to address the effects of climate change, ocean stressors, and biodiversity crises, it is essential that we maximize returns from our management investments. Linking efforts on land, including eradication of island invasive mammals, with marine restoration and protection should offer multiplied benefits to achieve concurrent global conservation goals.

PNAS

Longman's Beaked Whale (Indopacetus pacificus) in Fiji

Beaked whales (Ziphidae) are the second largest family of cetaceans with 23 currently recognized species, and the Longman's beaked whale (Indopacetus pacificus) is one of the least known globally (Reeves et al., 2003; Yamada et al., 2019). Longman's beaked whales occur in tropical waters from the western Indian Ocean to the eastern Pacific (Jefferson et al., 2015), with strandings in the Pacific reported from Hawaii, the Philippines, Taiwan, Japan, and New Caledonia (Figure 1) (West et al., 2013; Garrigue et al., 2016; Acebes et al., 2019; Kobayashi et al., 2021). Here we report the first record of this species in Fiji.

Aquatic Mammals

Genetic structure and historic demography of endangered unarmoured threespine stickleback at southern latitudes signals a potential new management approach

Habitat loss, flood control infrastructure, and drought have left most of southern California and northern Baja California's native freshwater fish near extinction, including the endangered unarmoured threespine stickleback ( Gasterosteus aculeatus williamsoni ). This subspecies, an unusual morph lacking the typical lateral bony plates of the G. aculeatus complex, occurs at arid southern latitudes in the eastern Pacific Ocean and survives in only three inland locations. Managers have lacked molecular data to answer basic questions about the ancestry and genetic distinctiveness of unarmoured populations. These data could be used to prioritize conservation efforts. We sampled G. aculeatus from 36 localities and used microsatellites and whole genome data to place unarmoured populations within the broader evolutionary context of G. aculeatus across southern California/northern Baja California. We identified three genetic groups with none consisting solely of unarmoured populations. Unlike G. aculeatus at northern latitudes, where Pleistocene glaciation has produced similar historical demographic profiles across populations, we found markedly different demographics depending on sampling location, with inland unarmoured populations showing steeper population declines and lower heterozygosity compared to low armoured populations in coastal lagoons. One exception involved the only high elevation population in the region, where the demography and alleles of unarmoured fish were similar to low armoured populations near the coast, exposing one of several cases of artificial translocation. Our results suggest that the current “management-by-phenotype” approach, based on lateral plates, is incidentally protecting the most imperilled populations; however, redirecting efforts toward evolutionary units, regardless of phenotype, may more effectively preserve adaptive potential.

Baja California, California

Natural and anthropogenic landscape factors shape functional connectivity of an ecological specialist in urban Southern California

Identifying how natural (i.e., unaltered by human activity) and anthropogenic landscape variables influence contemporary functional connectivity in terrestrial organisms can elucidate the genetic consequences of environmental change. We examine population genetic structure and functional connectivity among populations of a declining species, the Blainville's horned lizard ( Phrynosoma blainvillii ), in the urbanized landscape of the Greater Los Angeles Area in Southern California, USA. Using single nucleotide polymorphism data, we assessed genetic structure among populations occurring at the interface of two abutting evolutionary lineages, and at a fine scale among habitat fragments within the heavily urbanized area. Based on the ecology of P. blainvillii , we predicted which environmental variables influence population structure and gene flow and used gravity models to distinguish among hypotheses to best explain population connectivity. Our results show evidence of admixture between two evolutionary lineages and strong population genetic structure across small habitat fragments. We also show that topography, microclimate, and soil and vegetation types are important predictors of functional connectivity, and that anthropogenic disturbance, including recent fire history and urban development, are key factors impacting contemporary population dynamics. Examining how natural and anthropogenic sources of landscape variation affect contemporary population genetics is critical to understanding how to best manage sensitive species in a rapidly changing landscape.

California

Updates for Wake Atoll biosecurity management, biological control, survey, and management, and integrated pest management plans

Pests and invasive species have been defined as any organism that can have real or perceived adverse effects on operations, or the well-being of personnel, native plants, animals, their environment and ecosystem processes; attack or damage real property, supplies, equipment, or are otherwise undesirable (paraphrased from many sources including 53 Federal Register [FR] 15975, May 4, 1988, as amended at 78 FR 13507, February 28, 2013). Biosecurity programs and pest management plans can be developed and implemented with the goals of preventing the arrival of or eradication or control of pests and invasive species to reduce the potential for adverse effects. Such plans have been developed for Wake Atoll (U.S. Air Force, unpub. data 2017). Periodic plan reviews are an integral step for evaluating plan efficacy and updating plans with new information for improving plan effectiveness. This report summarizes an evaluation of past, current, and potential biosecurity and pest management for Wake with the intent this information can be used for updating existing plans. This document was prepared in cooperation with the U.S. Air Force (USAF) and surveys were performed for the 611th Civil Engineer Squadron Natural Resources Program ACES PROJECT no. YGFZ17002 under agreement number F2MUAA7116GW01 between the USAF and the U.S. Geological Survey’s Western Ecological Research Center (USGS-WERC).

Open-File Report

Reference genome of the California glossy snake, Arizona elegans occidentalis: A declining California Species of Special Concern

The glossy snake ( Arizona elegans ) is a polytypic species broadly distributed across southwestern North America. The species occupies habitats ranging from California’s coastal chaparral to the shortgrass prairies of Texas and southeastern Nebraska, to the extensive arid scrublands of central México. Three subspecies are currently recognized in California, one of which is afforded state-level protection based on the extensive loss and modification of its preferred alluvial coastal scrub and inland desert habitat. We report the first genome assembly of A. elegans occidentalis as part of the California Conservation Genomics Project (CCGP). Consistent with the reference genome strategy of the CCGP, we used Pacific Biosciences HiFi long reads and Hi-C chromatin-proximity sequencing technologies to produce a de novo assembled genome. The assembly comprises a total of 140 scaffolds spanning 1,842,602,218 base pairs, has a contig NG50 of 61 Mb, a scaffold NG50 of 136 Mb, and a BUSCO complete score of 95.9%, and is one of the most complete snake genome assemblies. The A. e. occidentalis genome will be a key tool for understanding the genomic diversity and the basis of adaptations within this species and close relatives within the hyperdiverse snake family Colubridae.

California

Interpreting long-distance movements of non-migratory golden eagles: Prospecting and nomadism?

Movements by animals can serve different functions and occur over a variety of spatial and temporal scales. Routine movement types, such as residency (localized movements) and migration, have been well studied. However, nonroutine movement types, such as dispersal, prospecting, and nomadism, are less well understood. Documenting these rarely detected events requires tracking large numbers of individuals across all age classes. We studied >500 golden eagles ( Aquila chrysaetos ) tracked by telemetry over a 10-year period in western North America, of which 160 engaged in nonroutine, long-distance (>300 km) movements. We identified spatial and temporal correlates of those movements at both small and large scales, and we quantified movement timing and direction. We further tested which age and sex classes of eagles were more likely to engage in these movements. Our analysis of 88,093 daily tracks suggested that distances traveled by eagles were responsive to the updraft potential of the spatial and temporal landscape they encountered. Tracks covered longer distances at locations and times of higher updraft potential, and older birds traveled farther than younger birds. By contrast, after decomposing daily tracks into 563 nonroutine, long-distance movements measured at a multiday scale, only the duration of travel was responsive to environmental conditions encountered by eagles. Multiday trips that were longer were those initiated in open and warm landscapes and those that ended in mountainous regions. Finally, long-distance movements were more frequently made in seasons other than winter, in north–south directions, and by young birds. We documented clear correlates of nonroutine, long-distance movements by golden eagles at small, local scales but found little evidence of such correlates at larger, regional scales. Most long-distance movements we documented fit patterns associated with traditional definitions of prospecting and nomadism but not migration. Our study is the first to describe these movement types by golden eagles, and as such provides a foundation for subsequent study into the movement ecology of other species.

Ecosphere

Taking the leap: A binational translocation effort to close the 420-km gap in the Baja California lineage of the California red-legged frog (Rana draytonii)

Conservation translocations, the human-mediated movement and release of a living organism for a conservation benefit, are increasingly recommended in species’ recovery plans as a technique for mitigating population declines or augmenting genetic diversity. However, translocation protocols for species with broad distributions may require regionally specific considerations to increase success, as environmental gradients may pose different constraints on population establishment and persistence in different parts of the range. Here we report on ongoing, genetically informed translocations of a threatened amphibian, California red-legged frog ( Rana draytonii ), from Baja California, México, to extirpated parts of the range in southern California in the United States, where contemporary stressors related to urbanization, invasive species, and aridification add to the natural environmental challenges already present for amphibians at this ‘warm edge’ of the range. We describe the collaborative binational planning required to jumpstart the effort, the fine-tuning of protocols for collection, transport, headstarting, and release of individuals, and results of multiple translocations, where time will tell whether the successes to date have reached their full potential. The steps outlined in this paper can serve as a template to inform future conservation translocations of imperiled amphibians across the U.S./México border, where the phylogenetics, historical biogeography and future habitat availability of a focal species are blind to political boundaries and critical to guiding recovery actions across the range.

Baja California, California

Cryptic extinction risk in a western Pacific lizard radiation

Cryptic ecologies, the Wallacean Shortfall of undocumented species’ geographical ranges and the Linnaean Shortfall of undescribed diversity, are all major barriers to conservation assessment. When these factors overlap with drivers of extinction risk, such as insular distributions, the number of threatened species in a region or clade may be underestimated, a situation we term ‘cryptic extinction risk’. The genus Lepidodactylus is a diverse radiation of insular and arboreal geckos that occurs across the western Pacific. Previous work on Lepidodactylus showed evidence of evolutionary displacement around continental fringes, suggesting an inherent vulnerability to extinction from factors such as competition and predation. We sought to (1) comprehensively review status and threats, (2) estimate the number of undescribed species, and (3) estimate extinction risk in data deficient and candidate species, in Lepidodactylus . From our updated IUCN Red List assessment, 60% of the 58 recognized species are threatened (n = 15) or Data Deficient (n = 21), which is higher than reported for most other lizard groups. Species from the smaller and isolated Pacific islands are of greatest conservation concern, with most either threatened or Data Deficient, and all particularly vulnerable to invasive species. We estimated 32 undescribed candidate species and linear modelling predicted that an additional 18 species, among these and the data deficient species, are threatened with extinction. Focusing efforts to resolve the taxonomy and conservation status of key taxa, especially on small islands in the Pacific, is a high priority for conserving this remarkably diverse, yet poorly understood, lizard fauna. Our data highlight how cryptic ecologies and cryptic diversity combine and lead to significant underestimation of extinction risk.

Biodiversity and Conservation

Hidden in plain sight: Detecting invasive species when they are morphologically similar to native species

Early detection and rapid response (EDRR) can help mitigate and control invasive species outbreaks early on but its success is dependent on accurate identification of invasive species. We evaluated a novel outbreak in San Diego County, California of the Sonoran Spotted Whiptail ( Aspidoscelis sonorae ) in order to confirm their spread as well as quantify how to better detect and potentially manage this invasive species in California. We found that A. sonorae went undetected for over two years due to its morphological similarity to native whiptails and that it has spread rapidly since they were first observed. There are two species of native California whiptails with which A. sonorae can be confused locally, the Orange-throated Whiptail ( Aspidoscelis hyperythrus ), and to a lesser extent the Tiger Whiptail ( Aspidoscelis tigris ). We review key diagnostic features to distinguish A. sonorae from native California whiptails. We also discuss how to efficiently use widely available community science tools to rapidly assess a novel invasive species outbreak and outline suggestions to help manage cryptic invasive species.

California

Fijian sea krait behavior relates to fine-scale environmental heterogeneity in old-growth coastal forest: The importance of integrated land–sea management for protecting amphibious animals

The importance of terrestrial coastal ecosystems for maintaining healthy coral reef ecosystems remains understudied. Sea kraits are amphibious snakes that require healthy coral reefs for foraging, but little is known about their requirements of terrestrial habitats, where they slough their skin, digest prey, and breed. Using concurrent microclimate measurements and behavior surveys, we show that a small, topographically flat atoll in Fiji with coastal forest provides many microhabitats that relate to the behaviors of Yellow Lipped Sea Kraits, Laticauda colubrina . Microclimates were significantly related to canopy cover, leaf litter depth, and distance from the high-water mark (HWM). Sea kraits were almost exclusively observed in coastal forest within 30 m of the HWM. Sloughing of skins only occurred within crevices of mature or dying trees. Resting L. colubrina were significantly more likely to occur at locations with higher mean diurnal temperatures, lower leaf litter depths, and shorter distances from the HWM. On Leleuvia, behavior of L. colubrina therefore relates to environmental heterogeneity created by old-growth coastal forests, particularly canopy cover and crevices in mature and dead tree trunks. The importance of healthy coastal habitats, both terrestrial and marine, for L. colubrina suggests it could be a good flagship species for advocating integrated land-sea management. Furthermore, our study highlights the importance of coastal forests and topographically flat atolls for biodiversity conservation. Effective conservation management of amphibious species that utilize land- and seascapes is therefore likely to require a holistic approach that incorporates connectivity among ecosystems and environmental heterogeneity at all relevant scales.

Ecology and Evolution

Range-wide persistence of the endangered arroyo toad (Anaxyrus californicus) for 20+ years following a prolonged drought

Prolonged drought due to climate change has negatively impacted amphibians in southern California, U.S.A. Due to the severity and length of the current drought, agencies and researchers had growing concern for the persistence of the arroyo toad ( Anaxyrus californicus ), an endangered endemic amphibian in this region. Range-wide surveys for this species had not been conducted for at least 20 years. In 2017–2020, we conducted collaborative surveys for arroyo toads at historical locations. We surveyed 88 of the 115 total sites having historical records and confirmed that the arroyo toad is currently extant in at least 61 of 88 sites and 20 of 25 historically occupied watersheds. We did not detect toads at almost a third of the surveyed sites but did detect toads at 18 of 19 specific sites delineated in the 1999 Recovery Plan to meet one of four downlisting criteria. Arroyo toads are estimated to live 7–8 years, making populations susceptible to prolonged drought. Drought is estimated to increase in frequency and duration with climate change. Mitigation strategies for drought impacts, invasive aquatic species, altered flow regimes, and other anthropogenic effects could be the most beneficial strategies for toad conservation and may also provide simultaneous benefits to several other native species that share the same habitat.

California

Multi-scale patterns in occurrence of an ephemeral pool-breeding amphibian

Species distributions are governed by processes occurring at multiple spatial scales. For species with complex life cycles, the needs of all life stages must be met within the dispersal limitations of the species. Multi-scale processes can be particularly important for these species, where small-scale patterns in specific habitat components can affect the distribution of one life stage, whereas large-scale patterns in land cover might better explain the distribution of other life stages. Using a conditional multi-scale model, we evaluated which aspects of the landscape and local environment are most strongly related to occupancy patterns of western spadefoots ( Spea hammondii ). In northern and central California, the proportion of grassland land cover within 2 km of a site was positively related to the occurrence of the northern clade of the western spadefoot. At the pond scale, we found that western spadefoots were more likely to breed in pools with lower pH. Our results indicate that protecting remaining grasslands for adult spadefoots and ensuring multiple pools with diverse characteristics and hydroperiods so at least some pools result in successful breeding will likely be necessary to conserve western spadefoots, especially with a changing climate. Considering the processes that affect species distributions at multiple life stages and spatial scales is an essential component of effective conservation.

California

Defining relevant conservation targets for the endangered Southern California distinct population segment of the mountain yellow-legged frog (Rana muscosa)

The endangered mountain yellow-legged frog ( Rana muscosa ) has been reduced to <10 isolated populations in the wild. Due to frequent catastrophic events (floods, droughts, wildfires), the recent dynamics of these populations have been erratic, making the future of the species highly uncertain. In 2018, a recovery plan was developed to improve the species status by reducing the impacts of various threats (predation, disease, habitat destruction), as well as reinforcing wild populations through the reintroduction of captive-bred frogs. The short-term goal stated in this plan was to reach a minimum of 20 populations of 50 adults each (hereafter, the 20/50 target ), before the species can be considered for downlisting from the U.S. Endangered Species Act. However, there is no guarantee that this 20/50 target will be sufficient to ensure the species persistence in the long run. Using 19 years of mark-recapture data, we estimated populations' demographic trends and assessed the viability of R. muscosa from a starting state of 20 populations of 50 adults each (i.e., the downlisting criteria). Our results reveal that, from this 20/50 state , the species has high chances of persistence only at a short time horizon (50 years). Moreover, >80% of populations would be extinct 50 years later. Therefore, the species will not be able to persist without implementation of the reintroduction program. We found that it is more important to increase the number of suitable sites occupied by R. muscosa than to simply reinforce or augment existing populations. Expanding the current distribution by establishing new populations at suitable sites, even after the “20 populations” mark has been reached, would increase the likelihood of the species' persistence in the longer term.

California

Golden eagle occupancy surveys and monitoring strategy in coastal southern California, United States

Golden eagles ( Aquila chrysaetos ) are of increasing conservation concern in western North America. Effective conservation measures for this wide-ranging, federally protected raptor species require monitoring frameworks that accommodate strong inference on the status of breeding populations across vast landscapes. We used a broad-scale sampling design to identify relationships between landscape conditions, detection rates, and site occupancy by territorial pairs of golden eagles in coastal southern California, United States. In 2016 and 2017, we surveyed 175 territory-sized sample sites (13.9-km 2 randomly selected grid cells) up to four times each year and detected a pair of eagles at least once in 22 (12.6%) sites. The probability of detecting pairs of eagles varied substantially between years and declined with increasing amounts of forest cover at survey sites, which obscured observations of eagles during ground-based surveys. After accounting for variable detection, the mean estimate of expected site occupancy by eagle pairs was 0.156 (SE = 0.081). Site-level estimates of occupancy were greatest (>0.30) at sample sites with more rugged terrain conditions, <20% human development, and lower amounts of scrubland vegetation cover. The proportion of a sample site with open grassland or forest cover was not strongly correlated with occupancy. We estimated that approximately 16% of the 5,338-km 2 sampling frame was used by resident pairs of golden eagles, corresponding to a sparsely distributed population of about 60 pairs (95% CI = 19 – 151 pairs). Our study provided baseline data for future surveys of golden eagles along with a widely applicable monitoring framework for identifying spatial conservation priorities in urbanizing landscapes.

California

Sex‐related differences in aging rate are associated with sex chromosome system in amphibians

Sex‐related differences in mortality are widespread in the animal kingdom. Although studies have shown that sex determination systems might drive lifespan evolution, sex chromosome influence on aging rates have not been investigated so far, likely due to an apparent lack of demographic data from clades including both XY (with heterogametic males) and ZW (heterogametic females) systems. Taking advantage of a unique collection of capture–recapture datasets in amphibians, a vertebrate group where XY and ZW systems have repeatedly evolved over the past 200 million years, we examined whether sex heterogamy can predict sex differences in aging rates and lifespans. We showed that the strength and direction of sex differences in aging rates (and not lifespan) differ between XY and ZW systems. Sex‐specific variation in aging rates was moderate within each system, but aging rates tended to be consistently higher in the heterogametic sex. This led to small but detectable effects of sex chromosome system on sex differences in aging rates in our models. Although preliminary, our results suggest that exposed recessive deleterious mutations on the X/Z chromosome (the “unguarded X/Z effect”) or repeat‐rich Y/W chromosome (the “toxic Y/W effect”) could accelerate aging in the heterogametic sex in some vertebrate clades.

Evolution

Projecting the remaining habitat for the western spadefoot (Spea hammondii) in heavily urbanized southern California

Extensive urbanization in coastal southern California has reduced natural habitat in this biodiversity hotspot. To better conserve ecological communities, state and federal agencies, along with local jurisdictions and private stakeholders, developed regional conservation plans for southern California. Although many protected areas exist within this region, the patchwork nature of these protected areas might not provide good coverage for species that require multiple habitat components, such as amphibians with complex life histories. Because of declines in the past century, the status of the western spadefoot ( Spea hammondii ) in southern California is of concern to state and federal wildlife agencies. Species distribution models (SDMs) can aid in determining the conservation status of imperiled species by projecting where suitable habitat remains and how much is protected from further development. We built SDMs that integrated site-occupancy data from systematic pitfall trapping surveys and presence-only data from biodiversity databases and citizen science platforms to project the current distribution of western spadefoots in southern California. Western spadefoot occurrence was positively related to the cover of grassland or shrub/scrub and the % sand in the soil within a 1000 m buffer, and was negatively related to slope, elevation, and distance to ephemeral streams or vernal pools . Most of the remaining unprotected habitat for western spadefoots is in the southern half of its historical range in western San Diego and Riverside counties. A few large tracts of spadefoot habitat exist on U.S. Department of Defense lands and smaller tracts remain on ecological reserves owned by state and local government agencies. Only small patches of habitat remain in the northern half of this clade’s historical range in Ventura, Orange, Los Angeles, and San Bernardino counties. Existing regional conservation plans provide ostensible spatial coverage of the majority of extant habitat for western spadefoots in southern California, but most of the habitat within the jurisdiction of these plans lacks formal protection, exposing this species to further declines as urbanization continues in the 21st century.

California

Quantitative SWOT analysis: A structured and collaborative approach to reintroduction site selection for the endangered Pacific pocket mouse

Species extinction and loss of biodiversity are major crises in the Anthropocene. Translocations of threatened and endangered species, the movement of individuals to augment existing or establish new populations, are increasingly important conservation tools, but have historically had limited success. Selection of a suitable receiver site is essential to translocation success, with poor site suitability cited as one of the most common reasons for relocation failure. We utilized a quantitative SWOT (Strengths, Weaknesses, Opportunities, Threats) analysis to evaluate and prioritize potential receiver sites for the Pacific pocket mouse ( Perognathus longimembris pacificus ), an endangered subspecies of heteromyid rodent endemic to coastal southern California. With only three remaining extant populations, a conservation breeding and reintroduction program is underway with the goal of creating additional wild populations in new or historic locations throughout its indigenous range. Here we describe our use of SWOT analysis and discuss the strengths of this approach as well as improvements that could be made to the evaluation process for other species. Overall, we found that using a structured, transparent, and collaborative process was a valuable tool for prioritizing receiver sites. SWOT analysis is a flexible, repeatable, and proactive approach for identifying receiver sites and the preparations necessary to improve species-specific suitability. This approach has the potential to result in successful relocation compared to less structured site selection processes where poor site suitability is ultimately identified as a major factor in failure to establish wild populations.

California