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Robert N. Fisher

Publications and source records attributed to Robert N. Fisher.

At least 217 records · Page 12Linked to original sources
USGS2009

Sample collection of ash and burned soils from the October 2007 southern California Wildfires

Between November 2 through 9, 2007 scientists from the U.S. Geological Survey (USGS) collected samples of ash and burned soils from 28 sites in six areas burned as a result of the Southern California wildfires of October 2007, including the Harris, Witch, Santiago, Ammo, Canyon, and Grass Valley Fires. The primary goal of this sampling and analysis effort was to understand how differences in ash and burned soil composition relate to vegetation type, underlying bedrock geology, burn intensity, and residential versus wildland. Sampling sites were chosen with the input of local experts from the USGS Water Resources and Biological Resources Disciplines to help understand possible effects of the fires on water supplies, ecosystems, and endangered species. The sampling was also carried out in conjunction with detailed field analysis of the spectral reflectance characteristics of the ash, so that chemical and mineralogical characteristics of the field samples could be used to help interpret data collected as part of an airborne, hyperspectral remote-sensing survey of several of the burned areas in mid-late November, 2007. This report presents an overview of the field sampling methodologies used to collect the samples, includes representative photos of the sites sampled, and summarizes important characteristics of each of the collection sites. In this report we use the term “ash” to refer collectively to white mineral ash, which results from full combustion of vegetation and black charred organic matter from partial combustion of vegetation or other materials. These materials were found to be intermingled as a deposited residue on the soil surface following the Southern California fires of 2007.

Open-File Report↗
USGS2009

Surface-dwelling and subterranean invertebrate fauna associated with giant reed ( Arundo donax Poaceae) in Southern California

In the southwestern United States giant reed, Arundo donax , is a non-native invasive plant that has become widely established in moist places and forms its largest stands along riparian corridors. The most widely reported negative effects include competition with native species, increased rate of transpiration, increased potential for wildfires, and stream channel and bank alteration. However, little is known about the faunal communities associated with this plant and the potential effects on native fauna. In this study, we focused our efforts on determining the faunal composition specifically from rhizome clumps of A. donax from a site located along the Santa Margarita River in San Diego County, California. A total of 2590 individual macro-invertebrates were collected and identified, and represented 64 species from 7 classes. No sensitive species and few vertebrates were found to be in association with A. donax rhizome clumps. Four non-native invertebrate species made up 43% of the total number of captured invertebrates, and 31% of the sampled invertebrates were confirmed as native species. This study demonstrates that A. donax rhizome clumps, and the soils associated with them, provide habitat for several native macro-invertebrate species, but can be dominated by a greater abundance of non-native species.

Bulletin, Southern California Academy of Sciences↗
USGS2009

Wild felids as hosts for human plague, Western United States

Plague seroprevalence was estimated in populations pumas and bobcats in the western United States. High levels of exposure in plague-endemic regions indicate the need to consider the ecology and pathobiology of plague nondomestic felid hosts to better understand the role of these species in disease persistence and transmission.

Emerging Infectious Diseases↗
USGS2008

Effect of species rarity on the accuracy of species distribution models for reptiles and amphibians in southern California

Aim: Several studies have found that more accurate predictive models of species' occurrences can be developed for rarer species; however, one recent study found the relationship between range size and model performance to be an artefact of sample prevalence, that is, the proportion of presence versus absence observations in the data used to train the model. We examined the effect of model type, species rarity class, species' survey frequency, detectability and manipulated sample prevalence on the accuracy of distribution models developed for 30 reptile and amphibian species. Location: Coastal southern California, USA. Methods: Classification trees, generalized additive models and generalized linear models were developed using species presence and absence data from 420 locations. Model performance was measured using sensitivity, specificity and the area under the curve (AUC) of the receiver-operating characteristic (ROC) plot based on twofold cross-validation, or on bootstrapping. Predictors included climate, terrain, soil and vegetation variables. Species were assigned to rarity classes by experts. The data were sampled to generate subsets with varying ratios of presences and absences to test for the effect of sample prevalence. Join count statistics were used to characterize spatial dependence in the prediction errors. Results: Species in classes with higher rarity were more accurately predicted than common species, and this effect was independent of sample prevalence. Although positive spatial autocorrelation remained in the prediction errors, it was weaker than was observed in the species occurrence data. The differences in accuracy among model types were slight. Main conclusions: Using a variety of modelling methods, more accurate species distribution models were developed for rarer than for more common species. This was presumably because it is difficult to discriminate suitable from unsuitable habitat for habitat generalists, and not as an artefact of the effect of sample prevalence on model estimation. ?? 2008 The Authors.

Diversity and Distributions↗
USGS2008

Responses in bird communities to wildland fires in southern California

There is a growing body of literature covering the responses of bird species to wildland fire events. Our study was unique among these because we investigated the effects of large-scale wildland fires on entire bird communities across multiple vegetation types. We conducted avian point counts during the breeding seasons for two years before and two years after the Cedar and Otay Fires in 2003 in southern California. Our balanced sampling effort took place at two sites, one low-elevation and one high-elevation, each containing replicate stations (burned and unburned) within five vegetation types: chaparral, coastal sage scrub, grassland, oak woodland, and riparian. Although fire caused some degree of change in the vegetation structure at all of our impacted survey points, we found that the post-fire shrub and tree cover was significantly lower in only two of the vegetation types within the low-elevation site, coastal sage scrub and chaparral. We found no significant changes in cover at the high-elevation site. Using univariate and multivariate analyses, we tested whether the fires were associated with a change in bird species diversity, community structure, and the relative abundance of individuals within a species. We found that species diversity changed in only one circumstance: it increased in coastal sage scrub at the low-elevation site. Multivariate analyses revealed significant differences in the post-fire bird community structure in the low-elevation chaparral, low-elevation coastal sage scrub, and the high-elevation grassland communities. Vegetation characteristics altered by fire, such as decreases in shrub and tree cover, influenced the changes we observed in the bird communities. The relative abundance of some species (lazuli bunting [ Passerina amoena ] and horned lark [ Eremophila alpestris ]) significantly increased after the fires, while other species declined significantly (Anna's hummingbird [ Calypte anna ], wrentit [ Chamaea fasciata ], and bushtit [ Psaltriparus minimus ]). We detected mixed results for the spotted towhee ( Pipilo maculatus ), which increased in burned chaparral and declined in burned coastal sage scrub within the low-elevation site. We suggest that the observed responses of birds to these fires may be attributed to: (1) the availability of nearby unburned refugia, (2) the continued suitability of post-fire vegetation at the study sites, and (3) the generally high mobility of this taxon.

California↗
USGS2008

Molecular and morphological analysis of the critically endangered Fijian iguanas reveals cryptic diversity and a complex biogeographic history

The Pacific iguanas of the Fijian and Tongan archipelagos are a biogeographic enigma in that their closest relatives are found only in the New World. They currently comprise two genera and four species of extinct and extant taxa. The two extant species, Brachylophus fasciatus from Fiji, Tonga, and Vanuatu and Brachylophus vitiensis from western Fiji, are of considerable conservation concern with B. vitiensis listed as critically endangered. A recent molecular study has shown that Brachylophus comprised three evolutionarily significant units. To test these conclusions and to reevaluate the phylogenetic and biogeographic relationships within Brachylophus, we generated an mtDNA dataset consisting of 1462 base pairs for 61 individuals from 13 islands, representing both Brachylophus species. Unweighted parsimony analyses and Bayesian analyses produced a well-resolved phylogenetic hypothesis supported by high bootstrap values and posterior probabilities within Brachylophus. Our data reject the monophyly of specimens previously believed to comprise B. fasciatus. Instead, our data demonstrate that living Brachylophus comprise three robust and well-supported clades that do not correspond to current taxonomy. One of these clades comprises B. fasciatus from the Lau group of Fiji and Tonga (type locality for B. fasciatus), while a second comprises putative B. fasciatus from the central regions of Fiji, which we refer to here as B. n. sp. Animals in this clade form the sister group to B. vitiensis rather than other B. fasciatus. We herein describe this clade as a new species of Brachylophus based on molecular and morphological data. With only one exception, every island is home to one or more unique haplotypes. We discuss alternative biogeographic hypotheses to explain their distribution in the Pacific and the difficulties of distinguishing these. Together, our molecular and taxonomic results have important implications for future conservation initiatives for the Pacific iguanas. ?? 2008 The Royal Society.

Philosophical Transactions of the Royal Society B:↗
USGS2008

Loss of genetic connectivity and diversity in urban microreserves in a southern California endemic Jerusalem cricket (Orthoptera: Stenopelmatidae: Stenopelmatus n. sp. "santa monica")

Microreserves may be useful in protecting native arthropod diversity in urbanized landscapes. However, species that do not disperse through the urban matrix may eventually be lost from these fragments. Population extinctions may be precipitated by an increase in genetic differentiation among fragments and loss of genetic diversity within fragments, and these effects should become stronger with time. We analyzed population genetic structure in the dispersal limited Jerusalem cricket Stenopelmatus n. sp. "santa monica" in the Santa Monica Mountains and Simi Hills north of Los Angeles, California (CA), to determine the impacts of fragmentation over the past 70 years. MtDNA divergence was greater among urban fragments than within contiguous habitat and was positively correlated with fragment age. MtDNA genetic diversity within fragments increased with fragment size and decreased with fragment age. Genetic divergence across 38 anonymous nuclear Inter-Simple Sequence Repeat (ISSR) loci was influenced by the presence of major highways and highway age, but there was no effect of additional urban fragmentation. ISSR diversity was not correlated with fragment size or age. Differing results between markers may be due to male-biased dispersal, or different effective population sizes, sorting rates, or mutation rates among sampled genes. Results suggest that genetic connectivity among populations has been disrupted by highways and urban development, prior to declines in local population sizes. We emphasize that genetic connectivity can rapidly erode in fragmented landscapes and that flightless arthropods can serve as sensitive indicators for these effects. ?? Springer Science+Business Media B.V. 2008.

Journal of Insect Conservation↗
USGS2008

Are hotspots of evolutionary potential adequately protected in southern California?

Reserves are often designed to protect rare habitats, or "typical" exemplars of ecoregions and geomorphic provinces. This approach focuses on current patterns of organismal and ecosystem-level biodiversity, but typically ignores the evolutionary processes that control the gain and loss of biodiversity at these and other levels (e.g., genetic, ecological). In order to include evolutionary processes in conservation planning efforts, their spatial components must first be identified and mapped. We describe a GIS-based approach for explicitly mapping patterns of genetic divergence and diversity for multiple species (a "multi-species genetic landscape"). Using this approach, we analyzed mitochondrial DNA datasets from 21 vertebrate and invertebrate species in southern California to identify areas with common phylogeographic breaks and high intrapopulation diversity. The result is an evolutionary framework for southern California within which patterns of genetic diversity can be analyzed in the context of historical processes, future evolutionary potential and current reserve design. Our multi-species genetic landscapes pinpoint six hotspots where interpopulation genetic divergence is consistently high, five evolutionary hotspots within which genetic connectivity is high, and three hotspots where intrapopulation genetic diversity is high. These 14 hotspots can be grouped into eight geographic areas, of which five largely are unprotected at this time. The multi-species genetic landscape approach may provide an avenue to readily incorporate measures of evolutionary process into GIS-based systematic conservation assessment and land-use planning.

Biological Conservation↗
USGS2007

Molecular and phenotypic diversity in Chionactis occipitalis (Western Shovel-nosed Snake), with emphasis on the status of C. o. klauberi (Tucson Shovel-nosed Snake).

Chionactis occipitalis (Western Shovel-nosed Snake) is a small colubrid snake inhabiting the arid regions of the Mojave, Sonoran, and Colorado deserts. Morphological assessments of taxonomy currently recognize four subspecies. However, these taxonomic proposals were largely based on weak morphological differentiation and inadequate geographic sampling. Our goal was to explore evolutionary relationships and boundaries among subspecies of C. occipitalis, with particular focus on individuals within the known range of C. o. klauberi (Tucson Shovel-nosed snake). Population sizes and range for C. o. klauberi have declined over the last 25 years due to habitat alteration and loss prompting a petition to list this subspecies as endangered. We examined the phylogeography, population structure, and subspecific taxonomy of C. occipitalis across its geographic range with genetic analysis of 1100 bases of mitochondrial DNA sequence and reanalysis of 14 morphological characters from 1543 museum specimens. We estimated the species gene phylogeny from 81 snakes using Bayesian inference and explored possible factors influencing genetic variation using landscape genetic analyses. Phylogenetic and population genetic analyses reveal genetic isolation and independent evolutionary trajectories for two primary clades. Our data indicate that diversification between these clades has developed as a result of both historical vicariance and environmental isolating mechanisms. Thus these two clades likely comprise 'evolutionary significant units' (ESUs). Neither molecular nor morphological data are concordant with the traditional C. occipitalis subspecies taxonomy. Mitochondrial sequences suggest specimens recognized as C. o. klauberi are embedded in a larger geographic clade whose range has expanded from western Arizona populations, and these data are concordant with clinal longitudinal variation in morphology. ?? 2007 Springer Science+Business Media B.V.

Conservation Genetics↗
USGS2007

Developing terrestrial, multi-taxon indices of biological integrity: An example from coastal sage scrub

We screened 351 species or genera for their response to disturbance in coastal sage scrub (CSS) to develop a 15-metric, 5-taxon Index of Biological Integrity (IBI). We collected data on ants, birds, herpetofauna, small mammals, and plants for two years on 46 sites established across a gradient of disturbance in three reserves. The gradient spanned relatively intact CSS with thick stands of shrubs, to former CSS stands type-converted to exotic grasses. ANOVAs and clustering analyses indicated the IBI could distinguish four levels of disturbance in CSS. General measures of community structure, such as richness, did not show changes across the gradient for most taxa, and responses of taxa across the gradient were varied and rarely correlated. However, turnover in species or genera across the gradient was common across all taxa as shrub-obligate life forms were replaced by those favoring grassy or disturbed habitats. Our data indicate index-based approaches based on data collected across disturbance gradients may outperform more traditional community level metrics when responses to anthropogenic influences are complex and vary across species. ?? 2007 Elsevier Ltd. All rights reserved.

Biological Conservation↗
USGS2007

Thamnophis hammondii foraging behavior

Thamnophis hammondii is considered one of the most aquatic of the gartersnakes and is closely associated with creeks and impoundments (Fitch 1940. Univ. California Publ. Zool. 44:1–150) with a diet consisting largely of both the larvae and transformed stages of amphibians (Spea, Bufo, Rana, Pseudacris) and small fish (Oncorhynchus, Gasterosteus, Eucyclogobius, and Cottus) (Jennings and Hayes 1994. Amphibian and Reptile Species of Special Concern in California. Final report contract no. 8023, California Department of Fish Game. 255 pp.; Rossman et al. 1996. The Garter Snakes: Evolution and Ecology. Univ. of Oklahoma Press, Norman. 332 pp.). Little is known regarding the foraging behavior of T. hammondii (Rossman et al., op. cit.). Herein, we describe the details of a predation sequence (approach, strike, and capture) observed in a natural setting.

Herpetological Review↗
USGS2006

Understanding the genetic effects of recent habitat fragmentation in the context of evolutionary history: Phylogeography and landscape genetics of a southern California endemic Jerusalem cricket (Orthoptera: Stenopelmatidae: Stenopelmatus)

Habitat loss and fragmentation due to urbanization are the most pervasive threats to biodiversity in southern California. Loss of habitat and fragmentation can lower migration rates and genetic connectivity among remaining populations of native species, reducing genetic variability and increasing extinction risk. However, it may be difficult to separate the effects of recent anthropogenic fragmentation from the genetic signature of prehistoric fragmentation due to previous natural geological and climatic changes. To address these challenges, we examined the phylogenetic and population genetic structure of a flightless insect endemic to cismontane southern California, Stenopelmatus 'mahogani' (Orthoptera: Stenopelmatidae). Analyses of mitochondrial DNA sequence data suggest that diversification across southern California began during the Pleistocene, with most haplotypes currently restricted to a single population. Patterns of genetic divergence correlate with contemporary urbanization, even after correcting for (geographical information system) GIS-based reconstructions of fragmentation during the Pleistocene. Theoretical simulations confirm that contemporary patterns of genetic structure could be produced by recent urban fragmentation using biologically reasonable assumptions about model parameters. Diversity within populations was positively correlated with current fragment size, but not prehistoric fragment size, suggesting that the effects of increased drift following anthropogenic fragmentation are already being seen. Loss of genetic connectivity and diversity can hinder a population's ability to adapt to ecological perturbations commonly associated with urbanization, such as habitat degradation, climatic changes and introduced species. Consequently, our results underscore the importance of preserving and restoring landscape connectivity for long-term persistence of low vagility native species. Journal compilation ?? 2006 Blackwell Publishing Ltd.

Molecular Ecology↗
USGS2005

Effects of urbanization on the distribution and abundance of amphibians and invasive species in southern California streams

Urbanization negatively affects natural ecosystems in many ways, and aquatic systems in particular. Urbanization is also cited as one of the potential contributors to recent dramatic declines in amphibian populations. From 2000 to 2002 we determined the distribution and abundance of native amphibians and exotic predators and characterized stream habitat and invertebratecommunities in 35 streams in an urbanized landscape north of Los Angeles (U.S.A.). We measured watershed development as the percentage of area within each watershed occupied by urban land uses. Streams in more developed watersheds often had exotic crayfish (Procambarus clarkii) and fish, and had fewer native species such as California newts (Taricha torosa) and California treefrogs (Hyla cadaverina). These effects seemed particularly evident above 8% development, a result coincident with other urban stream studies that show negative impacts beginning at 10-15% urbanization. For Pacific treefrogs (H. regilla), the most widespread native amphibian, abundance was lower in the presence of exotic crayfish, although direct urbanization effects were not found. Benthic macroinvertebrate communities were also less diverse in urban streams, especially for sensitive species. Faunal community changes in urban streams may be related to changes in physical stream habitat, such as fewer pool and more run habitats and increased water depth and flow, leading to more permanent streams. Variation in stream permanence was particularly evident in 2002, a dry year when many natural streams were dry but urban streams were relatively unchanged. Urbanization has significantly altered stream habitat in this region and may enhance invasion by exotic species and negatively affect diversity and abundance of native amphibians. ??2005 Society for Conservation Biology.

Conservation Biology↗
USGS2005

Geography for a Changing World - A science strategy for the geographic research of the U.S. Geological Survey, 2005-2015

This report presents a science strategy for the geographic research of the U.S. Geological Survey (USGS) for the years 2005-2015. The common thread running through the vision, mission, and science goals presented in the plan is that USGS geographers will provide national leadership to understand coupled human-environmental systems in the face of land change and will deliver pertinent information to decisionmakers on the vulnerability and resilience of these systems. We define land change science as the study of the human and environment dynamics that give rise to changed land use, cover, and surface form. A number of realities shape the strategic context of this plan: The Department of Interior Strategic Plan focuses on meeting society’s resource needs and sustaining the Nation’s life support systems, underscoring the importance of characterizing and understanding coupled human-environmental systems. In redefining its mission in the mid-1990s, the USGS envisions itself as an integrated natural science and information agency. The USGS will assume a national leadership role in the use of science to develop knowledge about the web of relations that couple biophysical and human systems and translate this knowledge into unbiased, reliable information that meets important societal information needs. The following trends will influence USGS geography-oriented science activities over the next decade. Most of the emerging earth science issues that the USGS will address are geographic phenomena. A growing international concern for aligning society’s development activities with environmental limits has led to an articulation of a science agenda associated with global environmental change, vulnerability, and resilience. Earth science investigations have evolved toward the study of very large areas, and the resulting huge volumes of data are challenging to manage and understand. Finally, scientists and the public face the challenge of gaining intelligent insights about geographic and environmental processes from these data, with the ultimate goal of guiding resource-management decisions. The first four science goals in the plan support understanding the human and environmental dynamics of land change. Each science goal has an associated set of strategic actions to achieve the goal. These goals and actions are consistent with national science priorities and the Department of Interior and USGS missions, take advantage of existing expertise, and lead to the strengthening of critical geographic research capacities that do not exist in other USGS disciplines.

Circular↗
USGS2005

Taricha torosa torosa (Coast Range Newt): Overwintering larvae

We present observations of overwintering behavior in Taricha torosa torosa larvae at two independent sites. We define overwintering larvae as newts that spend the entire winter season in the larval form. The winter season (December, January, and February) represents the average three coldest months for the southern California coastal region (Felton 1965. California’s Many Climates. Pacific Books. 169 pp.).

Herpetological Review↗