Geology topics

Robert N. Fisher

Publications and source records attributed to Robert N. Fisher.

At least 199 records · Page 11Linked to original sources

USGS2012

Three pathogens in sympatric populations of pumas, bobcats, and domestic cats: Implications for infections disease transmission

Anthropogenic landscape change can lead to increased opportunities for pathogen transmission between domestic and non-domestic animals. Pumas, bobcats, and domestic cats are sympatric in many areas of North America and share many of the same pathogens, some of which are zoonotic. We analyzed bobcat, puma, and feral domestic cat samples collected from targeted geographic areas. We examined exposure to three pathogens that are taxonomically diverse (bacterial, protozoal, viral), that incorporate multiple transmission strategies (vector-borne, environmental exposure/ingestion, and direct contact), and that vary in species-specificity. Bartonella spp., Feline Immunodeficiency Virus (FIV), and Toxoplasma gondii IgG were detected in all three species with mean respective prevalence as follows: puma 16%, 41% and 75%; bobcat 31%, 22% and 43%; domestic cat 45%, 10% and 1%. Bartonella spp. were highly prevalent among domestic cats in Southern California compared to other cohort groups. Feline Immunodeficiency Virus exposure was primarily associated with species and age, and was not influenced by geographic location. Pumas were more likely to be infected with FIV than bobcats, with domestic cats having the lowest infection rate. Toxoplasma gondii s eroprevalence was high in both pumas and bobcats across all sites; in contrast, few domestic cats were seropositive, despite the fact that feral, free ranging domestic cats were targeted in this study. Interestingly, a directly transmitted species-specific disease (FIV) was not associated with geographic location, while exposure to indirectly transmitted diseases – vector-borne for Bartonella spp. and ingestion of oocysts via infected prey or environmental exposure for T. gondii – varied significantly by site. Pathogens transmitted by direct contact may be more dependent upon individual behaviors and intra-specific encounters. Future studies will integrate host density, as well as landscape features, to better understand the mechanisms driving disease exposure and to predict zones of cross-species pathogen transmission among wild and domestic felids.

PLoS ONE↗

USGS2012

Urban habitat fragmentation and genetic population structure of bobcats in coastal southern California

Although habitat fragmentation is recognized as a primary threat to biodiversity, the effects of urban development on genetic population structure vary among species and landscapes and are not yet well understood. Here we use non-invasive genetic sampling to compare the effects of fragmentation by major roads and urban development on levels of dispersal, genetic diversity, and relatedness between paired bobcat populations in replicate landscapes in coastal southern California. We hypothesized that bobcat populations in sites surrounded by urbanization would experience reduced functional connectivity relative to less isolated nearby populations. Our results show that, bobcat genetic population structure is affected by roads and development but not always as predicted by the degree that these landscape features surround fragments. Instead, we suggest that urban development may affect functional connectivity between bobcat populations more by limiting the number and genetic diversity of source populations of migrants than by creating impermeable barriers to dispersal.

Orange↗

USGS2012

Report on the reptiles of Upland Savai’i

The reptile team conducted a 21 kilometre transect from the coast east of Asau to the uplands ending near Mauga Silisili at over 1720 m elevation. This transect covered the main habitats on Savai’i and allowed the team to determine where various reptile species and invasive species occurred across this elevational gradient. No previous reptile research had taken place on Savai’i above the elevation of A’opo Village. Limited sampling was also done around the Forestry Station in Asau. The team detected 11 species of lizards during these surveys, which is the majority of species known from Samoa. Noticeably absent was the Pacific black skink (Emoia nigra), which is a dominant element of the Samoan lizard fauna. Also no individuals of the Pacific boa (Candoia bibroni) were detected despite the concentrated effort spent looking for them. One boa was detected by the avifauna team at their Site 1, by the TV tower on a log in a marsh. The invasive house gecko (Hemidactylus frenatus) was also not detected along the main transect, but was the most abundant gecko on buildings in Asau. No reptiles were found above 1320 m elevation and most species were found significantly below there. Snakeeyed skinks (Cryptoblepharus poecilopleurus) were detected on Savai’i for the first time at Asau Getaway Resort then above the sawmill on the way to A’opo. Since western Savai’i is so poorly known for reptiles, this is the first time many of these species were recorded from this part of the island. Surveys for invasive species detected mammalian species (cats, rats, and pigs) and invertebrate species (Yellow Crazy ants and Big-headed ants). The mammals were found at various sites along the transect, including high elevations. The ants were found at lower elevations along the transect, but the Yellow Crazy ants appear to be irrupting currently on Savai’i and were swamping our traps from sea level to 500 m elevation. The low elevation lizard occurrences from sea level to 500 m appeared impaired by the invasive ants. Although habitat looked good in many places along the transect, certain species were rare or absent when the invasive ants were present, e.g. the Samoan skink (Emoia samoensis) which only occurred at elevations higher than the ants, whereas elsewhere in its range it occurs down to sea level. Currently the uplands over 500 m are free of invasive ants. We know from Hawai’i that invasive ants occur to over 2,000 m elevation and are ecologically very destructive to native flora and fauna. There is an immediate need to try to stop this upward ant invasion to protect this at-risk ecosystem, and to study the intact system now prior to an invasion.

Report↗

USGS2011

Refugial isolation and divergence in the Narrowheaded Gartersnake species complex (Thamnophis rufipunctatus) as revealed by multilocus DNA sequence data

Glacial–interglacial cycles of the Pleistocene are hypothesized as one of the foremost contributors to biological diversification. This is especially true for cold‐adapted montane species, where range shifts have had a pronounced effect on population‐level divergence. Gartersnakes of the Thamnophis rufipunctatus species complex are restricted to cold headwater streams in the highlands of the Sierra Madre Occidental and southwestern USA. We used coalescent and multilocus phylogenetic approaches to test whether genetic diversification of this montane‐restricted species complex is consistent with two prevailing models of range fluctuation for species affected by Pleistocene climate changes. Our concatenated nuDNA and multilocus species analyses recovered evidence for the persistence of multiple lineages that are restricted geographically, despite a mtDNA signature consistent with either more recent connectivity (and introgression) or recent expansion (and incomplete lineage sorting). Divergence times estimated using a relaxed molecular clock and fossil calibrations fall within the Late Pleistocene, and zero gene flow scenarios among current geographically isolated lineages could not be rejected. These results suggest that increased climate shifts in the Late Pleistocene have driven diversification and current range retraction patterns and that the differences between markers reflect the stochasticity of gene lineages (i.e. ancestral polymorphism) rather than gene flow and introgression. These results have important implications for the conservation of T. rufipunctatus (sensu novo), which is restricted to two drainage systems in the southwestern US and has undergone a recent and dramatic decline.

Molecular Ecology↗

USGS2011

Wildfires alter rodent community structure across four vegetation types in southern California, USA

We surveyed burned and unburned plots across four habitat reserves in San Diego County, California, USA, in 2005 and 2006, to assess the effects of the 2003 wildfires on the community structure and relative abundance of rodent species. The reserves each contained multiple vegetation types (coastal sage scrub, chaparral, woodland, and grassland) and spanned from 250 m to 1078 m in elevation. Multivariate analyses revealed a more simplified rodent community structure in all burned habitats in comparison to unburned habitats. Reduction in shrub and tree cover was highly predictive of changes in post-fire rodent community structure in the burned coastal sage scrub and chaparral habitats. Reduction in cover was not predictive for the less substantially burned woodlands and grasslands, for which we hypothesized that interspecific competition played a greater role in post-fire community structure. Across vegetation types, generalists and open habitat specialists typically increased in relative abundance, whereas closed habitat specialists decreased. We documented significant increases in relative abundance of the deer mouse ( Peromyscus maniculatus Wagner) and Dulzura kangaroo rat ( Dipodomys simulans Merriam). In contrast, we found significant decreases in relative abundance for the California mouse ( Peromyscus californicus Gambel), San Diego pocket mouse ( Chaetodipus fallax Merriam), desert woodrat ( Neotoma lepida Thomas), and brush mouse ( Peromyscus boylii Baird). Currently, our research program involves assessment of whether habitat conservation plans (HCPs) in southern California provide long-term protection to HCP covered species, as well as preserve ecosystem function. The scenario of increased wildfires needs to be incorporated into this assessment. We discuss our results in relation to management and conservation planning under a future scenario of larger and more frequent wildfires in southern California.

California↗

USGS2011

Conservation genetics of evolutionary lineages of the endangered mountain yellow-legged frog, Rana muscosa (Amphibia: Ranidae), in southern California

Severe population declines led to the listing of southern California Rana muscosa (Ranidae) as endangered in 2002. Nine small populations inhabit watersheds in three isolated mountain ranges, the San Gabriel, San Bernardino and San Jacinto. One population from the Dark Canyon tributary in the San Jacinto Mountains has been used to establish a captive breeding population at the San Diego Zoo Institute for Conservation Research. Because these populations may still be declining, it is critical to gather information on how genetic variation is structured in these populations and what historical inter-population connectivity existed between populations. Additionally, it is not clear whether these populations are rapidly losing genetic diversity due to population bottlenecks. Using mitochondrial and microsatellite data, we examine patterns of genetic variation in southern California and one of the last remaining populations of R. muscosa in the southern Sierra Nevada. We find low levels of genetic variation within each population and evidence of genetic bottlenecks. Additionally, substantial population structure is evident, suggesting a high degree of historical isolation within and between mountain ranges. Based on estimates from a multi-population isolation with migration analysis, these populations diversified during glacial episodes of the Pleistocene, with little gene flow during population divergence. Our data demonstrate that unique evolutionary lineages of R. muscosa occupy each mountain range in southern California and should be managed separately. The captive breeding program at Dark Canyon is promising, although mitigating the loss of neutral genetic diversity relative to the natural population might require additional breeding frogs.

California↗

USGS2011

Habitat use and movement of the endangered Arroyo Toad ( Anaxyrus californicus ) in coastal southern California

Information on the habitat use and movement patterns of Arroyo Toads ( Anaxyrus californicus ) is limited. The temporal and spatial characteristics of terrestrial habitat use, especially as it relates to upland use in coastal areas of the species' range, are poorly understood. We present analyses of radiotelemetry data from 40 individual adult toads tracked at a single site in coastal southern California from March through November of 2004. We quantify adult Arroyo Toad habitat use and movements and interpret results in the context of their life history. We show concentrated activity by both male and female toads along stream terraces during and after breeding, and, although our fall sample size is low, the continued presence of adult toads in the floodplain through the late fall. Adult toads used open sandy flats with sparse vegetation. Home-range size and movement frequency varied as a function of body mass. Observed spatial patterns of movement and habitat use both during and outside of the breeding period as well as available climatological data suggest that overwintering of toads in floodplain habitats of near-coastal areas of southern California may be more common than previously considered. If adult toads are not migrating out of the floodplain at the close of the breeding season but instead overwinter on stream terraces in near-coastal areas, then current management practices that assume toad absence from floodplain habitats may be leaving adult toads over-wintering on stream terraces vulnerable to human disturbance during a time of year when Arroyo Toad mortality is potentially highest.

California↗

USGS2011

Terrestrial forest management plan for Palmyra Atoll

This 'Terrestrial Forest Management Plan for Palmyra Atoll' was developed by the U.S. Geological Survey (USGS) for The Nature Conservancy (TNC) Palmyra Program to refine and expand goals and objectives developed through the Conservation Action Plan process. It is one in a series of adaptive management plans designed to achieve TNC's mission toward the protection and enhancement of native wildlife and habitat. The 'Terrestrial Forest Management Plan for Palmyra Atoll' focuses on ecosystem integrity and specifically identifies and addresses issues related to assessing the status and distribution of resources, as well as the pressures acting upon them, most specifically nonnative and potentially invasive species. The plan, which presents strategies for increasing ecosystem integrity, provides a framework to implement and track the progress of conservation and restoration goals related to terrestrial resources on Palmyra Atoll. The report in its present form is intended to be an overview of what is known about historical and current forest resources; it is not an exhaustive review of all available literature relevant to forest management but an attempt to assemble as much information specific to Palmyra Atoll as possible. Palmyra Atoll is one of the Northern Line Islands in the Pacific Ocean southwest of the Hawai`ian Islands. It consists of many heavily vegetated islets arranged in a horseshoe pattern around four lagoons and surrounded by a coral reef. The terrestrial ecosystem consists of three primary native vegetation types: Pisonia grandis forest, coastal strand forest, and grassland. Among these vegetation types, the health and extent of Pisonia grandis forest is of particular concern. Overall, the three vegetation types support 25 native plant species (two of which may be extirpated), 14 species of sea birds, six shore birds, at least one native reptile, at least seven native insects, and six native land crabs. Green and hawksbill turtles forage at Palmyra Atoll, and though rarely documented, beach nesting could be affected by terrestrial management actions. There are various nonnative or invasive species throughout the terrestrial ecosystem. The most notable examples of terrestrial invasive species include coconut palms (Cocos nucifera) and black rats (Rattus rattus). Although it is unclear whether they are nonnative, coconut palms are currently the most dominant plant across Palmyra Atoll. They compete with native plant species for space and resources and are potentially detrimental to sea birds dependent on native vegetation for roosting and nesting habitat. This competition in turn impacts nutrient resource availability, thereby reshaping energy flow in the ecosystem. Black rats are known to prey on ground-nesting sea birds and are likely responsible for the lack of burrowing sea bird reproduction at Palmyra Atoll. In addition, they may be facilitating the invasion of other nonnative species and negatively impacting other native fauna. Although the extent and impacts of these and other nonnative and (or) invasive species are not fully understood, the extent and impacts are clearly a threat to the native species and one of the most urgent threats to the overall ecosystem integrity of Palmyra Atoll. This 'Terrestrial Forest Management Plan for Palmyra Atoll' addresses issues related to invasive species and other problems. Priority goals are established as are associated objectives and strategies. The overarching goal is to perpetuate and where possible restore terrestrial ecosystem integrity through the following techniques: 1. Habitat management: Maintain and enhance habitat to the extent possible to sustain thriving Pisonia grandis forest, coastal strand forest, endemic grassland, self-sustaining populations of sea birds, shore birds, coconut crabs, native lizards, and native insects. 2. Monitoring and assessment: Acquire information on distribution and abundance as needed for conservation of each resour

Open-File Report↗

USGS2010

A rapid, strong, and convergent genetic response to urban habitat fragmentation in four divergent and widespread vertebrates

Background: Urbanization is a major cause of habitat fragmentation worldwide. Ecological and conservation theory predicts many potential impacts of habitat fragmentation on natural populations, including genetic impacts. Habitat fragmentation by urbanization causes populations of animals and plants to be isolated in patches of suitable habitat that are surrounded by non-native vegetation or severely altered vegetation, asphalt, concrete, and human structures. This can lead to genetic divergence between patches and in turn to decreased genetic diversity within patches through genetic drift and inbreeding. Methodology/Principal Findings: We examined population genetic patterns using microsatellites in four common vertebrate species, three lizards and one bird, in highly fragmented urban southern California. Despite significant phylogenetic, ecological, and mobility differences between these species, all four showed similar and significant reductions in gene flow over relatively short geographic and temporal scales. For all four species, the greatest genetic divergence was found where development was oldest and most intensive. All four animals also showed significant reduction in gene flow associated with intervening roads and freeways, the degree of patch isolation, and the time since isolation. Conclusions/Significance: Despite wide acceptance of the idea in principle, evidence of significant population genetic changes associated with fragmentation at small spatial and temporal scales has been rare, even in smaller terrestrial vertebrates, and especially for birds. Given the striking pattern of similar and rapid effects across four common and widespread species, including a volant bird, intense urbanization may represent the most severe form of fragmentation, with minimal effective movement through the urban matrix.

California↗

USGS2010

Interfacing models of wildlife habitat and human development to predict the future distribution of puma habitat

The impact of human land uses on ecological systems typically differ relative to how extensively natural conditions are modified. Exurban development is intermediate-intensity residential development that often occurs in natural landscapes. Most species-habitat models do not evaluate the effects of such intermediate levels of human development and even fewer predict how future development patterns might affect the amount and configuration of habitat. We addressed these deficiencies by interfacing a habitat model with a spatially-explicit housing-density model to study the effect of human land uses on the habitat of pumas ( Puma concolor ) in southern California. We studied the response of pumas to natural and anthropogenic features within their home ranges and how mortality risk varied across a gradient of human development. We also used our housing-density model to estimate past and future housing densities and model the distribution of puma habitat in 1970, 2000, and 2030. The natural landscape for pumas in our study area consisted of riparian areas, oak woodlands, and open, conifer forests embedded in a chaparral matrix. Pumas rarely incorporated suburban or urban development into their home ranges, which is consistent with the hypothesis that the behavioral decisions of individuals can be collectively manifested as population-limiting factors at broader spatial scales. Pumas incorporated rural and exurban development into their home ranges, apparently perceiving these areas as modified, rather than non-habitat. Overall, pumas used exurban areas less than expected and showed a neutral response to rural areas. However, individual pumas that selected for or showed a neutral response to exurban areas had a higher risk of mortality than pumas that selected against exurban habitat. Exurban areas are likely hotspots for puma-human conflict in southern California. Approximately 10% of our study area will transform from exurban, rural, or undeveloped areas to suburban or urban by 2030, and 35% of suitable puma habitat on private land in 1970 will have been lost by 2030. These land-use changes will further isolate puma populations in southern California, but the ability to visualize these changes had provided a new tool for developing proactive conservation solutions.

California↗

USGS2010

Ants as a measure of effectiveness of habitat conservation planning in southern California

In the United States multispecies habitat conservation plans were meant to be the solution to conflicts between economic development and protection of biological diversity. Although now widely applied, questions exist concerning the scientific credibility of the conservation planning process and effectiveness of the plans. We used ants to assess performance of one of the first regional conservation plans developed in the United States, the Orange County Central‐Coastal Natural Community Conservation Plan (NCCP), in meeting its broader conservation objectives of biodiversity and ecosystem‐level protection. We collected pitfall data on ants for over 3 years on 172 sites established across a network of conservation lands in coastal southern California. Although recovered native ant diversity for the study area was high, site‐occupancy models indicated the invasive and ecologically disruptive Argentine ant ( Linepithema humile ) was present at 29% of sites, and sites located within 200 m of urban and agricultural areas were more likely to have been invaded. Within invaded sites, native ants were largely displaced, and their median species richness declined by more than 60% compared with uninvaded sites. At the time of planning, 24% of the 15,133‐ha reserve system established by Orange County NCCP fell within 200 m of an urban or agricultural edge. With complete build out of lands surrounding the reserve, the proportion of the reserve system vulnerable to invasion will grow to 44%. Our data indicate that simply protecting designated areas from development is not enough. If habitat conservation plans are to fulfill their conservation promise of ecosystem‐level protection, a more‐integrated and systematic approach to the process of habitat conservation planning is needed .

California↗

USGS2010

Stomach nematodes (Mastophorus Muris) in rats (Rattus rattus) are associated with coconut (Cocos nucifera) Habitat at palmyra atoll

Black rats (Rattus rattus) and their stomach nematodes (Mastophorus muris) were historically introduced to islets at Palmyra Atoll in the central Pacific Line Islands. To investigate patterns of parasitism, we trapped rats and quantified nematodes on 13 islets of various sizes and habitat types. Most rats were parasitized (59) with an average of 12 worms per infected rat. Islet size did not greatly influence parasite population biology. Nematodes also did not appear to affect rat condition (weight to skull length). The only strong and consistent factor associated with the mean abundance of nematodes in rats was habitat (dominant cover and locally dominant plant species). Thus, nematodes were much more abundant in rats from sites dominated by coconut trees (Cocos nucifera). Coconut trees may also be an introduced species at Palmyra Atoll. ?? American Society of Parasitologists 2010.

Journal of Parasitology↗

USGS2010

Reptile and amphibian responses to large-scale wildfires in southern California

In 2003, southern California experienced several large fires that burned thousands of hectares of wildlife habitats and conserved lands. To investigate the effects of these fires on the reptile and amphibian communities, we compared the results from prefire herpetofauna and vegetation sampling to two years of postfire sampling across 38 burned and 17 unburned plots. The sampling plots were spread over four vegetation types and four open space areas within San Diego County. Our capture results indicated that burned chaparral and coastal sage scrub plots lost herpetofaunal species diversity after the fires and displayed a significant shift in overall community structure. Shrub and tree cover at the burned plots, averaged across the second and third postfire years, had decreased by 53 in chaparral and 75 in coastal sage scrub. Additionally, postfire herpetofauna community structure at burned plots was more similar to that found in unburned grasslands. In grassland and woodland/riparian vegetation plots, where shrub and tree cover was not significantly affected by fires, we found no differences in the herpetofaunal species diversity or community composition. At the individual species level, Sceloporus occidentalis was the most abundant reptile in these areas both before and after the fires. We saw increases in the net capture rates for several lizard species, including Aspidoscelis tigris, Phrynosoma coronatum, and Uta stansburiana in burned chaparral plots and Aspidoscelis hyperythra and U. stansburiana in burned coastal sage scrub plots. The toad, Bufo boreas, was detected at significantly fewer burned plots in chaparral after the fires. Additionally, we documented decreases in the number of plots occupied by lizards (Elgaria multicarinata), salamanders (Batrachoseps major), and snakes (Coluber constrictor, Lampropeltis getula, Pituophis catenifer, and Masticophis lateralis) in coastal sage scrub and chaparral after the fires. We discuss the individual species results as they relate to such life-history traits as the susceptibility to initial mortality, the response to the altered postfire habitat, and shifts in the availability of potential prey. We foresee that a continued unnatural fire regime will result in a simplification of the southern California reptile and amphibian communities. ?? 2010 Society for the Study of Amphibians and Reptiles.

Journal of Herpetology↗

USGS2010

Biosecurity Plan for Palmyra Atoll

This Biosecurity Plan for Palmyra Atoll was developed for The Nature Conservancy (TNC) Palmyra Program to refine and expand goals and objectives developed through the Conservation Action Plan process. The Biosecurity Plan is one in a series of adaptive management plans designed to achieve TNC's mission toward the protection and enhancement of native wildlife and habitat. The Biosecurity Plan focuses on ecosystem security, and specifically identifies and addresses issues related to non-native and potentially invasive species. The Plan attempts to identify pathways of invasion and strategies for preventing or reducing new introductions. Overall, the Biosecurity Plan provides a framework to implement and track the progress of conservation and restoration goals related to non-native species on Palmyra Atoll. Palmyra Atoll is one of the Northern Line Islands in the Pacific Ocean southwest of the Hawai`ian Islands. It consists of many heavily vegetated islets arranged in a horseshoe pattern around four lagoons and surrounded by a coral reef. At present, Palmyra Atoll harbors various non-native or invasive species in the terrestrial and marine ecosystems. The most notable examples of terrestrial invasive species include coconut trees (Cocos nucifera) and black rats (Rattus rattus). Although it is unclear whether they are non-native, coconut trees are currently the most dominant plant across Palmyra Atoll. They compete with native plant species for space and resources, and are potentially detrimental to seabirds dependent on native vegetation. Black rats are known to predate ground-nesting seabirds and are likely responsible for the lack of burrowing seabird reproduction on Palmyra Atoll. The most notable example of a marine invasive species is the corallimorph (Rhodactis howsei). Although Rhodactis howsei is a native species, it can take advantage of human-altered habitat and significantly change the natural habitat by aggressively outcompeting native corals. Although the extent and impacts of these and other non-native and (or) invasive species are not fully understood, they are clearly a threat to the native species and overall ecosystem integrity of Palmyra Atoll. In fact, non-native invasive species have been considered the most important threat to ecosystems in Hawai`i and the second most important threat to biodiversity world-wide. Palmyra Atoll is somewhat protected because of its remote location, but there are still potential pathways for the introduction of non-native and possibly invasive species. With the continued influx of aircraft and ocean vessels and their contents to and around Palmyra Atoll, we anticipate many more concerns related to the import and spread of non-native invasive species in the future. In terms of ecosystem security, prevention is the most effective and efficient tool for managing invasive species. There are various potential pathways for introduction and spread of non-native species within Palmyra Atoll's terrestrial and marine ecosystems. Identification of these pathways provides a first step in preventing introductions. We also recommend establishing, enhancing, and enforcing quarantine protocols to prevent future non-native species invasions. Other critical steps to minimize the impacts and spread of invasive species include early detection through inventory and monitoring, as well as containment, control, and management of non-native species already established at Palmyra Atoll. These efforts in combination with research and education will serve to inform management decisions related to ecosystem integrity. Along with reinstating ecosystem security, this Biosecurity Plan aims to evaluate new risk factors related to non-native and potentially invasive species. To that end, an adaptive management process of audit and review is highly recommended to ensure the implementation and efficacy of the management practices outlined above. In addition, it will be important to identify high r

Open-File Report↗

USGS2010

Effects of urbanization on carnivore species distribution and richness

Urban development can have multiple effects on mammalian carnivore communities. We conducted a meta-analysis of 7,929 photographs from 217 localities in 11 camera-trap studies across coastal southern California to describe habitat use and determine the effects of urban proximity (distance to urban edge) and intensity (percentage of area urbanized) on carnivore occurrence and species richness in natural habitats close to the urban boundary. Coyotes (Canis latrans) and bobcats (Lynx rufus) were distributed widely across the region. Domestic dogs (Canis lupus familiaris), striped skunks (Mephitis mephitis), raccoons (Procyon lotor), gray foxes (Urocyon cinereoargenteus), mountain lions (Puma concolor), and Virginia opossums (Didelphis virginiana) were detected less frequently, and long-tailed weasels (Mustela frenata), American badgers (Taxidea taxus), western spotted skunks (Spilogale gracilis), and domestic cats (Felis catus) were detected rarely. Habitat use generally reflected availability for most species. Coyote and raccoon occurrence increased with both proximity to and intensity of urbanization, whereas bobcat, gray fox, and mountain lion occurrence decreased with urban proximity and intensity. Domestic dogs and Virginia opossums exhibited positive and weak negative relationships, respectively, with urban intensity but were unaffected by urban proximity. Striped skunk occurrence increased with urban proximity but decreased with urban intensity. Native species richness was negatively associated with urban intensity but not urban proximity, probably because of the stronger negative response of individual species to urban intensity.

California↗

USGS2009

Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phrynosoma)

Lineage separation and divergence form a temporally extended process whereby populations may diverge genetically, morphologically, or ecologically, and these contingent properties of species provide the operational criteria necessary for species delimitation.We inferred the historical process of lineage formation in the coast horned lizard (Phrynosoma coronatum) species complex by evaluating a diversity of operational species criteria, including divergence in mtDNA (98 specimens; 2,781 bp) and nuclear loci (RAG-1, 1,054 bp; BDNF 529 bp), ecological niches (11 bioclimatic variables; 285 unique localities), and cranial horn shapes (493 specimens; 16 landmarks). A phylogenetic analysis of mtDNA recovers 5 phylogeographic groups arranged latitudinally along the Baja California Peninsula and in California. The 2 southern phylogeographic groups exhibit concordance between genetic, morphological, and ecological divergence; however, differentiation is weak or absent at more recent levels defined by phylogeographic breaks in California. Interpreting these operational species criteria together suggests that there are 3 ecologically divergent and morphologically diagnosable species within the P. coronatum complex. Our 3-species taxonomic hypothesis invokes a deep coalescence event when fitting the mtDNA genealogy into the species tree, which is not unexpected for populations that have diverged recently. Although the hypothesis that the 3 phylogeographic groups distributed across California each represent distinctive species is not supported by all of the operational species criteria evaluated in this study, the conservation status of the imperiled populations represented by these genealogical units remains critical.

Proceedings of the National Academy of Sciences of↗

USGS2009

Spatial and temporal patterns across an ecological boundary: Allochthonous effects of a young saltwater lake on a desert ecosystem

We documented changes in the abundance and composition of terrestrial flora and fauna with respect to distance from the sea edge and timing of large allochthonous inputs from the Salton Sea, California. We found significant effects that were most pronounced within 300 m of the shore, but extended 3 km inland via coyote scat deposition. The zone within 300 m of the sea had a higher density of vegetation with a distinctly different plant composition. The denser vegetation supported higher abundances of birds and reptiles. Coyotes exhibited spatial and temporal responses to marine subsidies of fish, while birds were likely subsidized by aquatic aerial insects. Top-down control, as well as dietary and habitat preferences, may have resulted in reduced number of ants, beetles, and small mammals near the sea. Species responses to the habitat edge appeared to be associated with life history, as the near shore habitat favored habitat generalists and shore specialists, while inland desert habitat favored many sand and open desert specialists. Ecosystem responses support current theories of allochthonous spatial subsidies and consumer-resource dynamics but were limited in scope, magnitude, and distance.

Journal of Arid Environments↗

USGS2009

Behavioral response of the coachwhip (Masticophis flagellum) to habitat fragment size and isolation in an urban landscape

Habitat fragmentation is a significant threat to biodiversity worldwide. Habitat loss and the isolation of habitat fragments disrupt biological communities, accelerate the extinction of populations, and often lead to the alteration of behavioral patterns typical of individuals in large, contiguous natural areas. We used radio-telemetry to study the space-use behavior of the Coachwhip, a larger-bodied, wide-ranging snake species threatened by habitat fragmentation, in fragmented and contiguous areas of coastal southern California. We tracked 24 individuals at three sites over two years. Movement patterns of Coachwhips changed in habitat fragments. As area available to the snakes was reduced, individuals faced increased crowding, had smaller home-range sizes, tolerated greater home-range overlap, and showed more concentrated movement activity and convoluted movement pathways. The behavioral response shown by Coachwhips suggests, on a regional level, area-effects alone cannot explain observed extinctions on habitat fragments but, instead, suggests changes in habitat configuration are more likely to explain the decline of this species. Ultimately, if “edge-exposure” is a common cause of decline, then isolated fragments, appropriately buffered to reduce emigration and edge effects, may support viable populations of fragmentation-sensitive species.

California↗