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John F. Bratton

Publications and source records attributed to John F. Bratton.

At least 19 recordsLinked to original sources
USGS2024

Observing systems, modeling, and forecasting

Predicting harmful algal blooms (HABs) requires integrating physical, chemical, and biological data collected from observing networks and then assimilating these data into models, which are used to generate forecasts. In 2005, the Harmful Algal Research and Response: A National Environmental Science Strategy 2005-2015 (HARRNESS, 2005) made recommendations on how to improve HAB modeling and forecasting over the next decade. Key HARRNESS recommendations related to sensing, networking, and modeling HABs included: ● Support the development and validation of new and improved technologies for remote cell and toxin detection, and for modeling and forecasting, ● Improve coordination of monitoring/ and modeling efforts, both at national and regional levels, ● Improve the use of networking technologies for monitoring and modeling efforts, ● Conduct sustained time series measurements of the biotic, chemical, and physical environments impacted by HABs, ● Develop food web models on the ecosystem fate and effects of toxins, ● Develop and improve species-specific models that link to physical-biological models. Here we review HAB observing, modeling, and forecasting advances and technologies and recommend research and management priorities for the next decade and beyond. Our report encompasses sensing technologies, sensor networking and data management, models and forecasts, and the paths to operationalize forecasts. Continued improvements of deployable sensors are foundational to improving early warning indicators, models, and forecasts, which are only as good as the underlying data. Sensing technology has advanced considerably in the last decade; for example, more capable fluorometric pigment sensors can track changes in bloom biomass in real-time. Additionally, automated imaging/classifying systems to identify and quantify key harmful algal (HA) taxa are being routinely deployed. However, deployable toxin sensors are available for only some HAB toxins and continue to be identified as a critical need by researchers and managers. As more and improved sensors and technologies become available, the data quality associated with each sensor needs to be assessed. Data quality encompasses the reliability, accuracy, and uncertainty associated with sensor-generated data. These data need to be of known quality so that researchers, managers, and end-users can reliably determine if the information is appropriate for their intended applications. Many of the data quality recommendations from HARRNESS (2005) are still relevant and have been reiterated within the management community. Understanding and documenting data quality, and when applicable, standardizing best practices for sensor use, continue to be recommended.

Report↗
USGS2017

Depth of the vadose zone controls aquifer biogeochemical conditions and extent of anthropogenic nitrogen removal

We investigated biogeochemical conditions and watershed features controlling the extent of nitrate removal through microbial dinitrogen (N 2 ) production within the surficial glacial aquifer located on the north and south shores of Long Island, NY, USA. The extent of N 2 production differs within portions of the aquifer, with greatest N 2 production observed at the south shore of Long Island where the vadose zone is thinnest, while limited N 2 production occurred under the thick vadose zones on the north shore. In areas with a shallow water table and thin vadose zone, low oxygen concentrations and sufficient DOC concentrations are conducive to N 2 production. Results support the hypothesis that in aquifers without a significant supply of sediment-bound reducing potential, vadose zone thickness exerts an important control of the extent of N 2 production. Since quantification of excess N 2 relies on knowledge of equilibrium N 2 concentration at recharge, calculated based on temperature at recharge, we further identify several features, such as land use and cover, seasonality of recharge, and climate change that should be considered to refine estimation of recharge temperature, its deviation from mean annual air temperature, and resulting deviation from expected equilibrium gas concentrations.

Water Research↗
USGS2013

Geologic effects on groundwater salinity and discharge into an estuary

Submarine groundwater discharge (SGD) can be an important pathway for transport of nutrients and contaminants to estuaries. A better understanding of the geologic and hydrologic controls on these fluxes is critical for their estimation and management. We examined geologic features, porewater salinity, and SGD rates and patterns at an estuarine study site. Seismic data showed the existence of paleovalleys infilled with estuarine mud and peat that extend hundreds of meters offshore. A low-salinity groundwater plume beneath this low-permeability fill was mapped with continuous resistivity profiling. Extensive direct SGD measurements with seepage meters ( n = 551) showed fresh groundwater discharge patterns that correlated well with shallow porewater salinity and the hydrogeophysical framework. Small-scale variability in fresh and saline discharge indicates influence of meter-scale geologic heterogeneity, while site-scale discharge patterns are evidence of the influence of the paleovalley feature. Beneath the paleovalley fill, fresh groundwater flows offshore and mixes with saltwater before discharging along paleovalley flanks. On the adjacent drowned interfluve where low-permeability fill is absent, fresh groundwater discharge is focused at the shoreline. Shallow saltwater exchange was greatest across sandy sediments and where fresh SGD was low. The geologic control of groundwater flowpaths and discharge salinity demonstrated in this work are likely to affect geochemical reactions and the chemical loads delivered by SGD to coastal surface waters. Because similar processes are likely to exist in other estuaries where drowned paleovalleys commonly cross modern shorelines, the existence and implications of complex hydrogeology are important considerations for studies of groundwater fluxes and related management decisions.

Delaware↗
USGS2011

Short-term nitrogen additions can shift a coastal wetland from a sink to a source of N 2 O

Coastal salt marshes sequester carbon at high rates relative to other ecosystems and emit relatively little methane particularly compared to freshwater wetlands. However, fluxes of all major greenhouse gases (N 2 O, CH 4 , and CO 2 ) need to be quantified for accurate assessment of the climatic roles of these ecosystems. Anthropogenic nitrogen inputs (via run-off, atmospheric deposition, and wastewater) impact coastal marshes. To test the hypothesis that a pulse of nitrogen loading may increase greenhouse gas emissions from salt marsh sediments, we compared N 2 O, CH 4 and respiratory CO 2 fluxes from nitrate-enriched plots in a Spartina patens marsh (receiving single additions of NaNO 3 equivalent to 1.4 g N m −2 ) to those from control plots (receiving only artificial seawater solutions) in three short-term experiments (July 2009, April 2010, and June 2010). In July 2009, we also compared N 2 O and CH 4 fluxes in both opaque and transparent chambers to test the influence of light on gas flux measurements. Background fluxes of N 2 O in July 2009 averaged −33 μmol N 2 O m −2 day −1 . However, within 1 h of nutrient additions, N 2 O fluxes were significantly greater in plots receiving nitrate additions relative to controls in July 2009. Respiratory rates and CH 4 fluxes were not significantly affected. N 2 O fluxes were significantly higher in dark than in transparent chambers, averaging 108 and 42 μmol N 2 O m −2 day −1 respectively. After 2 days, when nutrient concentrations returned to background levels, none of the greenhouse gas fluxes differed from controls. In April 2010, N 2 O and CH 4 fluxes were not significantly affected by nitrate, possibly due to higher nitrogen demands by growing S. patens plants, but in June 2010 trends of higher N 2 O fluxes were again found among nitrate-enriched plots, indicating that responses to nutrient pulses may be strongest during the summer. In terms of carbon equivalents, the highest average N 2 O and CH 4 fluxes observed, exceeded half the magnitude of typical daily net carbon sequestration rates by salt marshes. Thus, anthropogenic additions of nitrate to coasts can substantially alter N 2 O fluxes from marshes, although substantial temporal variation in these fluxes was observed. To better assess the climatic roles of salt marshes, greenhouse gas emissions need to be studied in the context of chronic nitrogen loads that impact many coastal ecosystems.

Atmospheric Environment↗
USGS2010

The three scales of submarine groundwater flow and discharge across passive continental margins

Increased study of submarine groundwater systems in recent years has provided a wealth of new data and techniques, but some ambiguity has been introduced by insufficient distinguishing of the relevant spatial scales of the phenomena studied. Submarine groundwater flow and discharge on passive continental margins can be most productively studied and discussed by distinct consideration of the following three spatial scales: (1) the nearshore scale, spanning approximately 0–10 m offshore and including the unconfined surficial aquifer; (2) the embayment scale, spanning approximately 10 m to as much as 10 km offshore and including the first confined submarine aquifer and its terminus; and (3) the shelf scale, spanning the width and thickness of the aquifers of the entire continental shelf, from the base of the first confined aquifer downward to the basement, and including influences of geothermal convection and glacio-eustatic change in sea level.

Journal of Geology↗
USGS2008

Submarine Hydrogeological Data from Cape Cod National Seashore

In order to test hypotheses about ground water flow under and into estuaries and the Atlantic Ocean, geophysical surveys, geophysical probing, submarine ground-water sampling, and sediment coring were conducted by U.S. Geological Survey (USGS) scientists at Cape Cod National Seashore (CCNS) in Massachusetts from 2004 through 2006. This USGS Open-File Report presents the data collected as a result of these field efforts.

Open-File Report↗
USGS2006

Ground water beneath coastal bays of the Delmarva Peninsula: Ages and nutrients

To complement a large-scale geophysical investigation of occurrence and discharge of fresh water beneath Delaware, Maryland, and Virginia (Delmarva) coastal bays, we measured (1) salinity and nutrient concentrations in ground water samples from several offshore coring sites and (2) a suite of chemical and isotopic parameters, including age tracers, in ground water samples from a Delaware site. Samples were collected in a variety of Holocene and Plio-Pleistocene sediments in nearshore and offshore areas of the bays. Ground waters that were significantly fresher than overlying waters were found in plumes up to at least 15 m thick extending to more than 500 m offshore in some areas. Steep salinity and nutrient gradients occur within a few meters of the sediment surface in most locations studied. The zone of transition from deeper fresher waters to shallower brackish waters is generally thin near shore, but thickens and becomes more gradual offshore. Ground water ages at the Delaware site were mostly < 50 yr in both fresh waters and brackish waters up to 22 m below the bay bottom. Water chemistry and age data indicate that fresh water plumes beneath the estuary are active extensions of the surficial aquifer carrying nitrate from recharge areas on land, whereas brackish ground water surrounding the fresh water plumes is recharged beneath the estuary and contains ammonium and phosphate released by diagenesis of shallow estuarine sediments. Denitrification affects some of the fresh water nitrate before it mixes with brackish ground water or discharges to surface water.

Delaware, Maryland, Virginia↗
USGS2006

Hydrogeologic setting and ground water flow beneath a section of Indian River Bay, Delaware

The small bays along the Atlantic coast of the Delmarva Peninsula (Delaware, Maryland, and Virginia) are a valuable natural resource, and an asset for commerce and recreation. These coastal bays also are vulnerable to eutrophication from the input of excess nutrients derived from agriculture and other human activities in the watersheds. Ground water discharge may be an appreciable source of fresh water and a transport pathway for nutrients entering the bays. This paper presents results from an investigation of the physical properties of the surficial aquifer and the processes associated with ground water flow beneath Indian River Bay, Delaware. A key aspect of the project was the deployment of a new technology, streaming horizontal resistivity, to map the subsurface distribution of fresh and saline ground water beneath the bay. The resistivity profiles showed complex patterns of ground water flow, modes of mixing, and submarine ground water discharge. Cores, gamma and electromagnetic-induction logs, and in situ ground water samples collected during a coring operation in Indian River Bay verified the interpretation of the resistivity profiles. The shore-parallel resistivity lines show subsurface zones of fresh ground water alternating with zones dominated by the flow of salt water from the estuary down into the aquifer. Advective flow produces plumes of fresh ground water 400 to 600 m wide and 20 m thick that may extend more than 1 km beneath the estuary. Zones of dispersive mixing between fresh and saline ground water develop on the upper, lower, and lateral boundaries of the the plume. the plumes generally underlie small incised valleys that can be traced landward to stream draining the upland. The incised valleys are filled with 1 to 2 m of silt and peat that act as a semiconfining layer to restrict the downward flow of salt water from the estuary. Active circulation of both the fresh and saline ground water masses beneath the bay is inferred from the geophysical results and supported by geochemical data.

Delaware↗
USGS2006

Studying ground water under Delmarva coastal bays using electrical resistivity

Fresh ground water is widely distributed in subsurface sediments below the coastal bays of the Delmarva Peninsula (Delaware, Maryland, and Virginia). These conditions were revealed by nearly 300 km of streamer resistivity surveys, utilizing a towed multichannel cable system. Zones of high resistivity displayed by inversion modeling were confirmed by vibradrilling investigations to correspond to fresh ground water occurrences. Fresh water lenses extended from a few hundred meters up to 2 km from shore. Along the western margins of coastal bays in areas associated with fine-grained surficial sediments, high-resistivity layers were widespread and were especially pronounced near tidal creeks. Fresh ground water layers were less common along the eastern barrier-bar margins of the bays, where sediments were typically sandy. Mid-bay areas in Chincoteague Bay, Maryland, did not show evidence of fresh water. Indian River Bay, Delaware, showed complex subsurface salinity relationships, including an area with possible hypersaline brines. The new streamer resistivity system paired with vibradrilling in these investigations provides a powerful approach to recovering information required for extension of hydrologic modeling of shallow coastal aquifer systems into offshore areas.

Delaware, Maryland, Virginia↗
USGS2006

Submarine ground-water discharge: nutrient loading and nitrogen transformations

Eutrophication of coastal waters due to nonpoint source land-derived nitrogen (N) loads is a worldwide phenomenon and perhaps the greatest agent of change altering coastal ecology (National Research Council, 2000; Howarth and others, 2000). Within the United States, a majority of estuaries have been determined to be moderately to severely impaired by eutrophication associated with increasing nutrient loads (Bricker and others, 1999). In coastal watersheds with soils of high hydraulic conductivity and permeable coastal sediments, ground water is a major route of transport of freshwater and its solutes from land to sea. Freshwater flowing downgradient from aquifers may either discharge from a seepage face near the intertidal zone, or flow directly into the sea as submarine ground-water discharge (SGD) (fig. 1). In the coastal aquifer, entrainment of saline pore water occurs prior to discharge, producing a gradient in ground-water salinity from land to sea, referred to as a subterranean estuary (Moore, 1999). In addition, processes including density-driven flow and tidal pumping create brackish and saline ground-water circulation. Hence, submarine ground-water discharge often consists of a substantial amount of recirculating seawater. Mixing of fresh and saline ground waters in the context of coastal sediments may alter the chemical composition of the discharging fluid. Depending on the biogeochemical setting, removal of fixed N due to processes leading to N 2 (dinitrogen gas) production in the nearshore aquifer and subterranean estuary may significantly attenuate land-derived N loads; or, processes such as ion exchange and tidal pumping in the subterranean estuary may substantially accelerate the transport of both land-derived and sediment re-mineralized N to estuarine water columns. As emphasized by Burnett and others (2001, 2002), a fundamental problem in evaluating the importance of ground-water discharge in marine geochemical budgets is the difficulty of collecting samples across the salinity gradients of coastal aquifers. In addition, locating and quantifying rates of submarine ground-water discharge remains a challenge due to the diffuse and spatially and temporally heterogeneous nature of discharge. As a result, with regard to the study of biogeochemical cycles and chemical loads to coastal waters, the seepage face and subterranean estuary are relatively new and under-studied zones in the aquatic cascade from watershed to sea. Processes occurring in those zones must be understood and considered for proper modeling and management of coastal water resources.

Fact Sheet↗
USGS2006

Continuous resistivity profiling data from the upper Neuse River Estuary, North Carolina, 2004-2005

The Neuse River Estuary in North Carolina has suffered impacts of eutrophication in recent years. As part of a larger project to better constrain nutrient budgets in the estuary, field investigations were performed to study occurrence and discharge of fresh and brackish ground water and nutrients beneath the estuary itself (fig. 1). A Continuous Resistivity Profiling (CRP) system (Manheim and others, 2004) was used to map the depth of the freshwater-saltwater interface (FSI) in sub-estuarine groundwater. This study area serves as a typological representation of a submarine groundwater environment characteristic of a shallow estuary in a wide coastal plain that has not experienced glaciation. Similar settings extend from New Jersey to Georgia, and along the Gulf of Mexico in the U.S. This report archives 29 lines of data collected during 2004 and 2005 surveys representing almost 210 km of survey lines. These data are further explained in the Data Processing section of the report and previews available of the processed data are available.

North Carolina↗
USGS2005

Submarine groundwater discharge to a small estuary estimated from radon and salinity measurements and a box model

Submarine groundwater discharge was quantified by a variety of methods for a 4-day period during the early summer of 2004, in Salt Pond, adjacent to Nauset Marsh, on Cape Cod, USA. Discharge estimates based on radon and salinity took advantage of the presence of the narrow channel connecting Salt Pond to Nauset Marsh, which allowed constructing whole-pond mass balances as water flowed in and out due to tidal fluctuations. The data suggest that less than one quarter of the discharge in the vicinity of Salt Pond happened within the pond itself, while three quarters or more of the discharge occurred immediately seaward of the pond, either in the channel or in adjacent regions of Nauset Marsh. Much of this discharge, which maintains high radon activities and low salinity, is carried into the pond during each incoming tide. A box model was used as an aid to understand both the rates and the locations of discharge in the vicinity of Salt Pond. The model achieves a reasonable fit to both the salinity and radon data assuming submarine groundwater discharge is fresh and that most of it occurs either in the channel or in adjacent regions of Nauset Marsh. Salinity and radon data, together with seepage meter results, do not rule out discharge of saline groundwater, but suggest either that the saline discharge is at most comparable in volume to the fresh discharge or that it is depleted in radon. The estimated rate of fresh groundwater discharge in the vicinity of Salt Pond is 3000-7000 m 3 d -1 . This groundwater flux estimated from the radon and salinity data is comparable to a value of 3200-4500 m 3 d -1 predicted by a recent hydrologic model (Masterson, 2004; Colman and Masterson, 2004), although the model predicts this rate of discharge to the pond whereas our data suggest most of the groundwater bypasses the pond prior to discharge. Additional work is needed to determine if the measured rate of discharge is representative of the long-term average, and to better constrain the rate of groundwater discharge seaward of Salt Pond.

Biogeosciences Discussions↗
USGS2004

Submarine ground-water discharge and its role in coastal processes and ecosystems

Submarine ground-water discharge (SGD) has recently been recognized as a phenomenon that can strongly influence coastal water and geochemical budgets and drive ecosystem change. For example, the discharge of nutrient-enriched ground water into coastal waters may contribute significantly to eutrophication and blooms of harmful algae. Similarly, the quantity of SGD can also directly affect the availability of fresh water to coastal communities, impact fragile coastal ecosystems such as estuaries and coral reefs, and influence geomorphology of shoreline features. Moore raised awareness of the global importance of SGD and much effort has been devoted to developing new tracer techniques and methods for the identification and quantification of SGD. Because the discharge of coastal ground water commonly occurs as diffuse seepage rather than focused discharge through identifiable springs, assessing SGD has remained difficult for both oceanographers and hydrologists. Through national and international research programs, Burnett, Moore, Charette, and others have developed a rigorous, systematic approach for quantifying SGD using a wide assortment of tracers and methods. Intercalibration experiments, such as those conducted in coastal waters off Australia, Brazil, and Long Island, NY, demonstrate that careful measurements can accurately quantify SGD, confirm some of the driving mechanisms (e.g. climatic and tidal forcing), and constrain the spatial and temporal scales at which these mechanisms operate. Now that approaches for rigorously quantifying SGD are becoming better established, scientists can now begin to investigate the wide variety of coastal processes affected by SGD.

Open-File Report↗
USGS2002

Birth of the modern Chesapeake Bay estuary between 7.4 and 8.2 ka and implications for global sea-level rise

Two major pulses of sea-level rise are thought to have taken place since the last glacial maximum — meltwater pulses (mwp) 1A (12 cal ka) and 1B (9.5 cal ka). Between mwp 1B and about 6 cal ka, many of the complex coastal ecosystems which ring the world’s oceans began to form. Here we report data for rhenium, carbon isotopes, total organic carbon, and fossil oysters from Chesapeake Bay which span the transition from fresh to brackish water conditions in the bay in the mid-Holocene. These data constrain sea-level change and resulting environmental change in the bay. They indicate that the transition was rapid, and that it was produced by (1) a third pulse of rapid eustatic sea-level rise, or (2) a geometry of the prehistoric Chesapeake Bay basin which predisposed it to a nonlinear response to a steadily rising sea level. Similar nonlinear changes in vulnerable coastal environments are likely to take place in the future due to polar warming, regardless of the timing or rate of sea-level rise.

Chesapeake Bay↗