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Heather E. Johnson

Publications and source records attributed to Heather E. Johnson.

At least 19 recordsLinked to original sources
USGS2026

Improving predictions of insect harassment for barren-ground caribou in the Arctic

Many populations of barren-ground caribou ( Rangifer tarandus ) have declined or are declining, which is concerning given their ecological role in Arctic ecosystems and their societal role in northern communities. Insect harassment is an important driver of the behavior, energetics, and demographic rates of caribou, and yet, due to challenges in predicting harassment, there is limited understanding of how it is responding to changing Arctic conditions. We investigated environmental correlates of mosquito (Culicidae) and oestrid fly (Oestridae) harassment for the Porcupine caribou herd, with the aim of improving our ability to predict harassment. We collected field observations of mosquito activity and used video collars to detect oestrid fly activity across the summer range, which spans the Alaska–Yukon border. Additionally, we documented the composition of harassing insects collected in malaise traps using DNA metabarcoding. We developed predictive mosquito and oestrid fly harassment models using remotely sensed variables relevant to the insects' biology within a nonlinear modeling framework. We then used the top mosquito and oestrid fly models to hindcast predictions of harassment during 1950–2024 and investigate long-term changes in severity and phenology. The top mosquito harassment model included wind speed, temperature, days since snowmelt, precipitation, topographic position, and soil moisture. The top oestrid fly harassment model included temperature, cumulative growing degree days, and time of day. Harassment of both insects was limited at low temperatures (<10°C), with mosquitoes being additionally limited at high temperatures (>22°C) and wind speeds (>7 m/s). The phenology of mosquito and oestrid fly harassment exhibited curvilinear trends across the summer, peaking in midsummer based on the number of days since snowmelt and cumulative growing degree days, respectively. Mosquito harassment also increased with greater soil moisture, precipitation, and at lower relative elevations. Hindcasting indicated that insect harassment notably intensified and advanced over time. Intensifying harassment could decrease caribou foraging opportunities and body condition, and advancing harassment is likely to increasingly overlap with the calving season when calves are most vulnerable. Our results highlight climate-driven changes in insect harassment and provide improved indices for predicting harassment in the Arctic for future applications.

Alaska↗
USGS2026

Validating antler- and movement-based estimates of caribou reproduction using video camera collars

Wildlife agencies invest substantial resources in monitoring ungulate reproductive rates given ongoing concerns about population trends and their implications for management. For barren-ground caribou ( Rangifer tarandus ) in the North American Arctic, data on parturition and neonate survival have traditionally been collected using visual observations of antler retention and calf presence from small, fixed-wing aircraft. However, these surveys are weather-dependent, expensive, and dangerous, motivating the development of movement-based approaches that infer reproductive events from global positioning system (GPS) location data. We had the unique opportunity to use video camera collars to validate both antler- and movement-based methods for estimating reproduction in barren-ground caribou, using data from the Porcupine (2018–2023) and Western Arctic (2021, 2023) herds in Alaska, USA, and Yukon, Canada. For the movement-based approaches, we assessed individual-based and population-based methods, which both inferred parturition following a sharp decline in movement and inferred calf loss following a sharp increase in movement. We investigated these approaches using rarified 1-, 2-, 4-, and 8-hour fix intervals. Based on video collar observations, we found that antler retention at the onset of the calving period was highly accurate for predicting parturition (96% accuracy) but became unreliable as calving progressed, as approximately 80% of parturient females shed their antlers during the calving period. In contrast, both movement methods performed marginally for estimating caribou parturition (~70% accuracy), with estimates from the individual-based method exhibiting greater bias than those from the population-based method. The individual-based method also poorly predicted neonate survival (≤49% accuracy for detecting parturition and calf fate for the Porcupine Herd). Video data revealed that inaccuracies with the movement methods often occurred when caribou bedded during storms, rested after traversing mountainous terrain, lost a calf shortly after birth, or increased movement to evade insects. These results have important implications for management agencies using antler- and movement-based methods to estimate caribou reproduction, particularly when informing assessments of population decline or recovery. Our results demonstrate the utility of video collar data for validating reproductive monitoring approaches and provide insights into how these approaches can be improved.

Alaska, Yukon↗
USGS2026

Testing the efficacy of industrial mitigation measures for caribou in the Arctic

1. Mitigation measures are commonly employed to reduce the negative effects of industrial development on wildlife but are not often evaluated for their efficacy. For example, oil fields in the Arctic typically incorporate design features intended to increase permeability for migratory, barren-ground caribou ( Rangifer tarandus) , even though there is limited empirical evidence of the effectiveness of some of these features. 2. Given expected increases in energy development in the North American Arctic, we examined whether two mitigation measures commonly used for migratory caribou, elevating pipelines and separating roads and pipelines, were effective at increasing the probability caribou would cross infrastructure. 3. We conducted our investigation on adult female caribou in the Central Arctic Herd of Alaska during summer, analyzing movement data from telemetry collars (2015-2020) in conjunction with spatial data on oil field infrastructure. To evaluate whether caribou would cross infrastructure as a function of the mitigation measures, we employed a generalized additive modeling framework capable of detecting non-linear and threshold responses. 4. We found that caribou were more likely to cross a pipeline when the nearest pipeline was elevated (≥1.9-m), a result that supports current mitigation recommendations. We also found that caribou were more likely to cross both a road and pipeline when they were directly adjacent to one another, as opposed to being spatially separated, a result that contradicts recommended mitigation strategies. 5. Synthesis and applications . As new energy projects are designed and implemented in environments around the globe, it is important to ensure that mitigation efforts for wildlife are scientifically validated for their efficacy. In the North American Arctic, such efforts will be critical for minimizing the impacts of expanding industrial development on migratory caribou and on the human communities that rely on them for subsistence.

Alaska↗
USGS2026

At the leading edge: Advancing and bridging the science and management of range-shifting species

Climate-mediated shifts in species distributions are reshaping ecosystems worldwide, creating major challenges for conservation and resource management. These range shifts have far-reaching ecological and socio-economic consequences, requiring managers to address complex ecological dynamics while navigating diverse regulatory and value systems. Despite growing attention, key gaps remain in supporting management, from improved understanding of the mechanisms of range shifts, to evaluating the effectiveness of climate adaptation strategies, and tailoring science to the institutional and social contexts of decision-making. Central challenges include scaling processes across space, time, and organizational levels, and reconciling mismatches between biogeographical and management scales. Progress will depend on more comprehensive datasets to assess outcomes across taxa and regions, stronger cross-jurisdictional cooperation, and decision frameworks that integrate uncertainty alongside multiple value systems. Addressing these gaps is essential to make research more actionable and to enable successful management of species redistribution.

BioScience↗
USGS2025

Mosquitos, forage and the future of Arctic caribou

Climate change in the Arctic is altering summer forage and insect conditions for migratory caribou. Warmer, earlier summers can mean increased forage quantity, but reduced quality. At the same time, these conditions can trigger earlier, more intense periods of insect harassment. As HEATHER JOHNSON writes, these changes are associated with shifts in migratory caribou behaviours and distributions, along with their ability to survive and reproduce.

The Circle↗
USGS2025

Bears avoid residential neighborhoods in response to the experimental reduction of anthropogenic attractants

Introduction: Urbanization is an extreme form of land use alteration, with human development driving changes in the distribution of resources available to wildlife. Some large carnivores have learned to exploit anthropogenic food resources in urban development, resulting in human-carnivore conflict that can have detrimental impacts to people and carnivores, as exemplified by American black bears. Management agencies commonly promote the use of bear-resistant garbage containers for reducing conflicts, but little is known about the actual behavioral responses of bears to this intervention. Methods: To understand whether black bears alter their behavior in response to changes in residential waste management, we investigated patterns of bear behavior in Durango, Colorado, where anthropogenic attractants were experimentally manipulated. Using location data from collared black bears, we modeled resource selection and movement in response to areas that had received bear-resistant garbage containers compared to those that did not. Results: Bears avoided residential areas where garbage availability had been reduced, and this avoidance response increased over subsequent years, potentially suggesting that bears were learning from the management intervention. Bear movement rates, however, were not notably affected by the garbage reduction. Discussion: Our findings highlight the importance of reducing the availability of anthropogenic attractants for changing bear behavior and reducing risk of urban human-bear conflict, and that these responses can strengthen over time as bears learn from the management intervention.

Colorado↗
USGS2025

DNA metabarcoding and video camera collars yield different inferences about the summer diet of an arctic ungulate

The diets of wild ungulates are a foundational component of their ecology, influencing their behavior, body condition, and demography. With changing environmental conditions, there is a significant need to identify important forage items for ungulates, but this has often proved challenging. Declines in several barren-ground caribou herds across the North American Arctic have raised concerns about the influence of climate change on caribou forage conditions. Shifts in plant phenology, biomass, quality, and composition may be influencing caribou diets and subsequently affecting their body condition and demographic rates. Although forage is a primary driver of barren-ground caribou behavior and population dynamics, there is limited recent information about the specific foods they consume, and uncertainty about appropriate methods for identifying those foods. Investigators are increasingly using fecal DNA metabarcoding and video camera collars to assess ungulate diets, but comparative studies of these approaches are lacking. To examine the summer diets of barren-ground caribou, we used both fecal metabarcoding and video camera collars to identify forage used by the Porcupine caribou herd, which spans the Alaska–Yukon border. In 2021, we sampled the diets of adult females by collecting fecal samples and observing collar videos during 4 sampling occasions. We found that caribou consumed very specific forage items, and those items varied markedly across the growing season. Caribou predominantly consumed graminoids and lichens during early summer, and shrubs and forbs later in the season. Metabarcoding and video data provided significantly different estimates of diet for all taxonomic levels we evaluated, and inferences from the two approaches were often disparate. Metabarcoding failed to detect some items frequently consumed in videos, such as lichens, and indicated high use of other items rarely consumed, such as mosses. We found that video data provided greater taxonomic diversity and resolution for vascular plants and lichens, and more closely aligned with past research and biological expectations than data from fecal metabarcoding. Additional research is needed to be able to use these methods to identify the biomass of different forage items consumed.

Alaska, Yukon↗
USGS2025

Marginalizing time in habitat selection and species distribution models improves inference

Aim Recent methodological advances for studying how animals move and use space with telemetry data have focused on fine-scale, more mechanistic inference. However, in many cases, researchers and managers remain interested in larger scale questions regarding species distribution and habitat use across study areas, landscapes, or seasonal ranges. Point processes offer a unified framework for many methods applied in studies of species distribution and resource selection; however, challenges remain in terms of dealing with temporal autocorrelation common in many types of telemetry data collected from animal locations. Innovation Space–time point processes (STPPs) have a unique property, in that marginalising time offers a connection between individual animal movement and broader point processes, yet this property has seen little attention in both statistical and applied research. In this paper, we first present some of the details of this marginalisation property and methods for applying marginalised STPPs (mSTTPs) to autocorrelated telemetry data and then apply a mSTTP in a case study on the summer space use and habitat selection of female caribou ( Rangifer tarandus ) in Denali National Park and Preserve, Alaska. Main Conclusions The case study demonstrated that an mSTPP approach can improve inference over other commonly used methods in terms of its ability to account for temporal autocorrelation and offers greater precision in parameter estimates and improved predictions of space use. As this method fits conveniently into the existing point process frameworks, it offers a practical solution to dealing with temporal autocorrelation inherent to many types of telemetry data when research questions center around broader scale patterns of animal habitat selection and space use.

Alaska↗
USGS2025

Estimating spatially explicit survival and mortality risk from telemetry data with thinned point process models

Mortality risk for animals often varies spatially and can be linked to how animals use landscapes. While numerous studies collect telemetry data on animals, the focus is typically on the period when animals are alive, even though there is important information that could be gleaned about mortality risk. We introduce a thinned spatial point process (SPP) modelling framework that couples relative abundance and space use with a mortality process to formally treat the occurrence of mortality events across the landscape as a spatial process. We show how this model can be embedded in a hierarchical statistical framework and fit to telemetry data to make inferences about how spatial covariates drive both space use and mortality risk. We apply the method to two data sets to study the effects of roads and habitat on spatially explicit mortality risk: (1) VHF telemetry data collected for willow ptarmigan in Alaska, and (2) hourly GPS telemetry data collected for black bears in Colorado. These case studies demonstrate the applicability of this method for different species and data types, making it broadly useful in enabling inferences about the mechanisms influencing animal survival and spatial population processes while formally treating survival as a spatial process, especially as the development and implementation of joint analyses continue to progress.

Ecology Letters↗
USGS2024

From causes of conflict to solutions: Shifting the lens on human–carnivore coexistence research

Human-carnivore conflicts pose significant challenges in the management and conservation of carnivores across the globe. Abundant research has led to generalizable insights into the causes of such conflicts. For example, conflicts predictably occur when carnivores have access to human food resources, particularly when their natural foods are scarce. However, similar insights into the effectiveness of interventions aimed at coexistence remains comparatively scarce. We hypothesized that this disparity might be reflected in a bias toward research focused on causes of conflict rather than interventions to address it. To test our hypothesis, we evaluated the content of studies on human–carnivore conflicts and coexistence in Canada and the United States from 2010 to 2021. We found that studies disproportionately focused on causes of conflict, with that discrepancy increasing through our study period. We also found a disproportionate focus on black bears and wolves and western jurisdictions, and a disproportionate use of observational (vs. experimental) approaches. Studies on conflict interventions were primarily directed at the carnivores themselves (e.g., lethal approaches) versus human elements (e.g., attractant management, policies), despite evidence that the latter are more effective. We expect that a shift in focus toward solutions-oriented research, integrating insights across geographies, taxa, social contexts, and disciplines, would facilitate effective interventions and foster coexistence, improving outcomes for people and carnivores alike.

Conservation Science and Practice↗
USGS2024

A systematic review of the effects of climate variability and change on black and brown bear ecology and interactions with humans

Climate change poses a pervasive threat to humans and wildlife by altering resource availability, changing co-occurrences, and directly or indirectly influencing human-wildlife interactions. For many wildlife agencies in North America, managing bears ( Ursus spp.) and human-bear interactions is a priority, yet the direct and indirect effects of climate change are exacerbating management challenges. Understanding the underlying ecological drivers of bear responses to climate variability and change, and the implications for conflict, will be critical for maintaining human-bear coexistence in North America. We synthesized 120 articles that identified direct and indirect mechanisms by which climate variability and change affect brown bears ( Ursus arctos ) and American black bears ( Ursus americanus ) in North America. The literature focused on examining climate impacts on bear diet, body size, habitat selection, space use, activity, denning chronology, and population demographics and dynamics. Across these categories, we summarized the documented and projected bear responses and resulting implications for human-bear interactions. Climate-driven changes in natural food availability were frequently implicated in influencing bear behavior and demography, and creating conditions under which interactions with humans are likely to increase. Bears in North America may face increased challenges as habitat and natural food availability continue to be altered by climate change. Our review provides a foundation upon which to identify climate drivers of bear ecology, conditions conducive to human-bear interactions, and adaptive management strategies. Given substantial evidence of climate impacts to bears, incorporating climate considerations into bear management can help managers strategically allocate resources and promote human-bear coexistence.

Biological Conservation↗
USGS2023

Effects of vehicle traffic on space use and road crossings of caribou in the Arctic

Assessing the effects of industrial development on wildlife is a key objective of managers and conservation practitioners. However, wildlife responses are often only investigated with respect to the footprint of infrastructure, even though human activity can strongly mediate development impacts. In Arctic Alaska, there is substantial interest in expanding energy development, raising concerns about the potential effects on barren-ground caribou ( Rangifer tarandus granti ). While caribou generally avoid industrial infrastructure, little is known about the role of human activity in moderating their responses, and whether managing activity levels could minimize development effects. To address this uncertainty, we examined the influence of traffic volume on caribou summer space use and road crossings in the Central Arctic Herd within the Kuparuk and Milne Point oil fields on the North Slope of Alaska. We first modeled spatiotemporal variation in hourly traffic volumes across the road system from traffic counter data using gradient-boosted regression trees. We then used generalized additive models to estimate nonlinear step selection functions and road-crossing probabilities from collared female caribou during the post-calving and insect harassment seasons, when they primarily interact with roads. Step selection analyses revealed that caribou selected areas further from roads (~1–3 km) during the post-calving and mosquito seasons and selected areas with lower traffic volumes during all seasons, with selection probabilities peaking when traffic was <5 vehicles/h. Using road-crossing models, we found that caribou were less likely to cross roads during the insect seasons as traffic increased, but that response dissipated as insect harassment became more severe. Past studies suggested that caribou exhibit behavioral responses when traffic exceeds 15 vehicles/h, but our results demonstrate behavioral responses at much lower traffic levels. Our results illustrate that vehicle activity mediates caribou responses to road infrastructure, information that can be used in future land-use planning to minimize the behavioral responses of caribou to industrial development in sensitive Arctic landscapes.

Alaska↗
USGS2022

Pleistocene–Holocene vicariance, not Anthropocene landscape change, explains the genetic structure of American black bear (Ursus americanus) populations in the American Southwest and northern Mexico

The phylogeography of the American black bear ( Ursus americanus ) is characterized by isolation into glacial refugia, followed by population expansion and genetic admixture. Anthropogenic activities, including overharvest, habitat loss, and transportation infrastructure, have also influenced their landscape genetic structure. We describe the genetic structure of the American black bear in the American Southwest and northern Mexico and investigate how prehistoric and contemporary forces shaped genetic structure and influenced gene flow. Using a suite of microsatellites and a sample of 550 bears, we identified 14 subpopulations organized hierarchically following the distribution of ecoregions and mountain ranges containing black bear habitat. The pattern of subdivision we observed is more likely a product of postglacial habitat fragmentation during the Pleistocene and Holocene, rather than a consequence of contemporary anthropogenic barriers to movement during the Anthropocene. We used linear mixed-effects models to quantify the relationship between landscape resistance and genetic distance among individuals, which indicated that both isolation by resistance and geographic distance govern gene flow. Gene flow was highest among subpopulations occupying large tracts of contiguous habitat, was reduced among subpopulations in the Madrean Sky Island Archipelago, where montane habitat exists within a lowland matrix of arid lands, and was essentially nonexistent between two isolated subpopulations. We found significant asymmetric gene flow supporting the hypothesis that bears expanded northward from a Pleistocene refugium located in the American Southwest and northern Mexico and that major highways were not yet affecting gene flow. The potential vulnerability of the species to climate change, transportation infrastructure, and the US–Mexico border wall highlights conservation challenges and opportunities for binational collaboration.

Arizona, New Mexico, Utah, Wyoming↗
USGS2022

Survival and reproduction in Arctic caribou are associated with summer forage and insect harassment

Investigators have speculated that the climate-driven “greening of the Arctic” may benefit barren-ground caribou populations, but paradoxically many populations have declined in recent years. This pattern has raised concerns about the influence of summer habitat conditions on caribou demographic rates, and how populations may be impacted in the future. The short Arctic summer provides caribou with important forage resources but is also the time they are exposed to intense harassment by insects, factors which are both being altered by longer, warmer growing seasons. To better understand the effects of summer forage and insect activity on Arctic caribou demographic rates, we investigated the influence of estimated forage biomass, digestible energy (DE), digestible nitrogen (DN), and mosquito activity on the reproductive success and survival of adult females in the Central Arctic Herd on the North Slope of Alaska. We tested the hypotheses that greater early summer DN would increase subsequent reproduction (parturition and late June calving success) while greater biomass and DE would increase adult survival (September–May), and that elevated mosquito activity would reduce both demographic rates. Because the period when abundant forage DN is limited and overlaps with the period of mosquito harassment, we also expected years with low DN and high harassment to synergistically reduce caribou reproductive success. Examining these relationships at the individual-level, using GPS-collared females, and at the population-level, using long-term monitoring data, we generally found support for our expectations. Greater early summer DN was associated with increased subsequent calving success, while greater summer biomass was associated with increased adult survival. Mosquito activity was associated with reductions in adult female parturition, late June calving success, and survival, and in years with low DN, had compounding effects on subsequent late June calving success. Our findings indicate that summer nutrition and mosquito activity collectively influence the demographic rates of Arctic caribou, and may impact the dynamics of populations in the future under changing environmental conditions.

Alaska↗
USGS2022

Wildlife population dynamics

In this chapter we provide an overview of some core concepts, describe exponential growth as the basic foundation for understanding population dynamics, and discuss some of the factors that can affect wildlife population dynamics. We then show how management insights that can be gained from analyzing the dynamics of individual age or stage classes, examine dynamics of multiple populations across a landscape, consider key aspects of monitoring wildlife population dynamics, and close with a case study applying many of the topics in the chapter. Throughout we stress a few key themes: (1) variation is as important as the mean in understanding population dynamics (embrace uncertainty!); (2) some of the most powerful insights into outcomes of wildlife management actions are nonintuitive, revealed by applying data to models; and (3) because different management actions influence population dynamics in different ways, we must understand population processes to identify the most effective actions to meet population objectives.

Book chapter↗
USGS2021

Dynamic selection for forage quality and quantity in response to phenology and insects in an Arctic ungulate

Spatiotemporal variation in forage is a primary driver of ungulate behavior, yet little is known about the nutritional components they select, and how selection varies across the growing season with changes in forage quality and quantity. We addressed these uncertainties in barren-ground caribou ( Rangifer tarandus ), which experience their most important foraging opportunities during the short Arctic summer. Recent declines in Arctic caribou populations have raised concerns about the influence of climate change on summer foraging opportunities, given shifting vegetation conditions and insect harassment, and their potential effects on caribou body condition and demography. We examined Arctic caribou selection of summer forage by pairing locations from females in the Central Arctic Herd of Alaska with spatiotemporal predictions of biomass, digestible nitrogen (DN), and digestible energy (DE). We then assessed selection for these nutritional components across the growing season at landscape and patch scales, and determined whether foraging opportunities were constrained by insect harassment. During early summer, at the landscape scale, caribou selected for intermediate biomass and high DN and DE, following expectations of the forage maturation hypothesis. At the patch scale, however, caribou selected for high values of all forage components, particularly DN, suggesting that protein may be limiting. During late summer, after DN declined below the threshold for protein gain, caribou exhibited a switch at both spatial scales, selecting for higher biomass, likely enabling mass and fat deposition. Mosquito activity strongly altered caribou selection of forage and increased their movement rates, while oestrid fly activity had little influence. Our results demonstrate that early and late summer periods afford Arctic caribou distinct foraging opportunities, as they prioritize quality earlier in the summer and quantity later. Climate change may further constrain caribou access to DN as earlier, warmer Arctic summers may be associated with reduced DN and increased mosquito harassment.

Alaska↗
USGS2021

Spring phenology drives range shifts in a migratory Arctic ungulate with key implications for the future

Annual variation in phenology can have profound effects on the behavior of animals. As climate change advances spring phenology in ecosystems around the globe, it is becoming increasingly important to understand how animals respond to variation in the timing of seasonal events and how their responses may shift in the future. We investigated the influence of spring phenology on the behavior of migratory, barren-ground caribou ( Rangifer tarandus ), a species that has evolved to cope with short Arctic summers. Specifically, we examined the effect of spring snow melt and vegetation growth on the current and potential future space-use patterns of the Porcupine Caribou Herd (PCH), which exhibits large, inter-annual shifts in their calving and post-calving distributions across the U.S.–Canadian border. We quantified PCH selection for snow melt and vegetation phenology using machine learning models, determined how selection resulted in annual shifts in space-use, and then projected future distributions based on climate-driven phenology models. Caribou exhibited strong, scale-dependent selection for both snow melt and vegetation growth. During the calving season, caribou selected areas at finer scales where the snow had melted and vegetation was greening, but within broader landscapes that were still brown or snow covered. During the post-calving season, they selected vegetation with intermediate biomass expected to have high forage quality. Annual variation in spring phenology predicted major shifts in PCH space-use. In years with early spring phenology, PCH predominately used habitat in Alaska, while in years with late phenology, they spent more time in Yukon. Future climate conditions were projected to advance spring phenology, shifting PCH calving and post-calving distributions further west into Alaska. Our results demonstrate that caribou selection for habitat in specific phenological stages drive dramatic shifts in annual space-use patterns, and will likely affect future distributions, underscoring the importance of maintaining sufficient suitable habitat to allow for behavioral plasticity.

Alaska, Yukon↗