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Hydraulic and Geomorphic Assessment of the Merced River and Historic Bridges in Eastern Yosemite Valley, Yosemite National Park, California: Sacramento, California

The Merced River in the popular and picturesque eastern-most part of Yosemite Valley in Yosemite National Park, California, USA, has been extensively altered since the park was first conceived in 1864. Historical human trampling of streambanks has been suggested as the cause of substantial increases in stream width, and the construction of undersized stone bridges in the 1920s has been suggested as the major factor leading to an increase in overbank flooding due to deposition of bars and islands between the bridges. In response, the National Park Service at Yosemite National Park (YNP) requested a study of the hydraulic and geomorphic conditions affecting the most-heavily influenced part of the river, a 2.4-km reach in eastern Yosemite Valley extending from above the Tenaya Creek and Merced River confluence to below Housekeeping Bridge. As part of the study, present-day conditions were compared to historical conditions and several possible planning scenarios were investigated, including the removal of an elevated road berm and the removal of three undersized historic stone bridges identified by YNP as potential problems: Sugar Pine, Ahwahnee and Stoneman Bridges. This Open-File Report will be superseded at a later date by a Scientific Investigations Report. A two-dimensional hydrodynamic model, the USGS FaSTMECH (Flow and Sediment Transport with Morphological Evolution of Channels) model, within the USGS International River Interface Cooperative (iRIC) model framework, was used to compare the scenarios over a range of discharges with annual exceedance probabilities of 50-, 20-, 10-, and 5- percent. A variety of topographic and hydraulic data sources were used to create the input conditions to the hydrodynamic model, including aerial LiDAR (Light Detection And Ranging), ground-based LiDAR, total station survey data, and grain size data from pebble counts. A digitized version of a historical topographic map created by the USGS in 1919, combined with estimates of grain size, was used to simulate historical conditions, and the planning scenarios were developed by altering the present-day topography. Roughness was estimated independently of measured water-surface elevations by using the mapped grain-size data and the Keulegan relation of grain size to drag coefficient. The FaSTMECH hydrodynamic model was evaluated against measured water levels by using a 130.9 m 3 s -1 flow (approximately a 33-percent annual exceedance probability flood) with 36 water-surface elevations measured by YNP personnel on June 8, 2010. This evaluation run had a root mean square error of 0.21 m between the simulated- and observed water-surface elevations (less than 10 percent of depth), though the observed water-surface elevations had relatively high variation due to the strong diurnal stage changes over the course of the 4.4-hour collection period, during which discharge varied by about 15 percent. There are presently no velocity data with which to test the model. A geomorphic assessment was performed that consisted of an estimate of the magnitude and frequency of bedload and suspended-sediment transport at “Tenaya Bar”, an important gravel-cobble bar located near the upstream end of the study site that determines the amount of flow across the floodplain at the Sugar Pine – Ahwahnee bend. An analysis of select repeat cross-sections collected by YNP since the late 1980s was done to investigate changes in channel cross-sectional area near the Tenaya Bar site. The results of the FaSTMECH models indicate that the maximum velocities in the present-day channel within the study reach are associated with Stoneman and Sugar Pine Bridges, at close to 3.0 m s -1 for the 5-percent annual exceedance probability flood. The modeled maximum velocities at Ahwahnee Bridge are comparatively low, at between 1.5 and 2.0 m s -1 , most likely due to the bridge's orientation parallel to down-valley floodplain flows. The results of the FaSTMECH models for the bridge removal scenarios indicate a reduction in average velocity at the bridge sites for the range of flows by approximately 23-38 percent (Sugar Pine Bridge), 32-42 percent (Ahwahnee Bridge), and 33-39 percent (Stoneman Bridge), though a side channel of concern to YNP management did not appear to be substantially affected by the removal scenarios. In comparison to the historical data, the FaSTMECH results suggest that flows for present-day conditions do not inundate the floodplain until between the 50- and 20-percent annual exceedance probability flood, whereas historically, a large portion of the floodplain was inundated during the 50-percent annual exceedance probability flood. Modeled maximum velocities in the present-day channel commonly exceed 2.0 m s -1 , whereas with the historical scenario, modeled maximum in-channel velocities rarely exceeded 2.0 m s -1 . The geomorphic analysis of the magnitude-frequency of bedload and suspended-sediment transport suggests that at the important Tenaya Bar site, the majority of bed sediment is mobile during most snowmelt-dominated floods. In contrast to sediment transport capacity, the analysis of repeat cross-sections suggests that bedload sediment supply into the eastern Yosemite Valley may be quite different between rain-on-snow floods and snowmelt-dominated floods, potentially with most sediment supply occurring during rain-on-snow floods, such as the 1997 flood. In contrast, the magnitude-frequency analysis of bedload and suspended-sediment transport suggests that long-term bedload sediment transport is likely dominated by snowmelt floods, and suspended-sediment transport is relatively low compared to bedload transport. Obtaining measured velocity data throughout the study reach would aid in model calibration, and thus would improve confidence in model results. Improved confidence in the model velocity results would allow additional substantial analyses of reach-scale effects of the planning scenarios and would enable the development of geomorphic models to evaluate the long-term geomorphic responses of the site. In addition, the collection of watershed sediment-supply data, about which little is presently known, would give planners helpful tools to plan restoration scenarios for this nationally important river.

California

Rock strength properties of granitic rocks in Yosemite Valley, Yosemite National Park, California

Yosemite National Park, located in the central part of California’s Sierra Nevada mountains, is a glacially carved landscape filled with iconic rock formations such as Cathedral Peak, El Capitan, and Half Dome. Igneous rocks, consisting primarily of variations of granite, granodiorite, and tonalite, make up the majority of the bedrock geology and their overall strength supports the spectacular cliffs and domes of Yosemite Valley that draw many visitors to the park. These same sheer cliffs also are the source areas for frequent rock falls, which, in addition to being the primary mechanism for cliff formation, can also pose a hazard to visitors and infrastructure located below. To obtain rock strength parameters for use in assessing rock-fall potential in Yosemite National Park, we conducted a comprehensive rock mechanics laboratory testing program on a set of granitic rocks that form many of the cliffs in Yosemite Valley.

California

Quantitative rock-fall hazard and risk assessment for Yosemite Valley, Yosemite National Park, California

Rock falls are common in Yosemite Valley, California, posing substantial hazard and risk to the approximately four million annual visitors to Yosemite National Park. Rock falls in Yosemite Valley over the past few decades have damaged structures and caused injuries within developed regions located on or adjacent to talus slopes highlighting the need for additional investigations into rock-fall hazard and risk. This assessment builds upon previous investigations of rock-fall hazard and risk in Yosemite Valley and focuses on hazard and risk to structures posed by relatively frequent fragmental-type rock falls as large as approximately 100,000 (cubic meters) in volume.

California

Opportunities and challenges for restoration of the Merced River through Yosemite Valley, Yosemite National Park, USA

Successful river restoration requires understanding and integration of multiple disciplinary perspectives, including evaluations of past and ongoing watershed processes, local geomorphic response, and impacts unique to human activity. Nowhere is this more apparent than along the Merced River in Yosemite National Park, USA, where both an outstanding natural landscape and the consequences of over a century of human disturbances continue to interact. An intact upstream watershed highlights the importance here of local impacts on geomorphic response. Incision and the resulting decoupling of the channel from its adjacent late-Holocene floodplain are consequences of reduced channel roughness, likely from de-snagging the river, and instream gravel mining in the 19th and early 20th century. Riparian-zone disturbance by visitor use has damaged riparian vegetation and soils, inducing channel widening. Revetments and channel-spanning bridges, the latter being visible and oft-cited impacts to fluvial processes, have distorted the natural evolution of meanders and induced local channel narrowing. The historical rate of sediment export from Yosemite Valley has greatly exceeded replenishment from upstream and lateral sources, creating a deficit that now inhibits recovery via passive restoration of more natural channel form and function. Climate change may amplify now-diminished fluvial processes but also exacerbate the rate of sediment export. These conditions, reflecting a complex intersection of geologic history, modern geomorphic processes, and human interactions, demonstrate how a limited influx of sediment coupled with intensive human use can have long-term consequences for riverine conditions, restoration opportunities, and social engagement with the riverine landscape.

California

Food habits of American black bears as a metric for direct management of humanbear conflict in Yosemite Valley, Yosemite National Park, California

The management of human-American black bear (Ursus americanus) conflict has been of significant concern for Yosemite National Park (YNP) personnel since the 1920s. Park managers implemented the YNP Human-Bear Management Plan in 1975 in an effort to reduce human-bear conflicts, especially in the extensively developed Yosemite Valley (YV). We used scat analysis to estimate annual and seasonal food habits of black bears in YV during 2001-02. We assessed the success of efforts to reduce the availability of anthropogenic foods, including garbage, by examining changes in the diet compared to a study from 1974-78 (Graber 1981). We also quantified consumption of non-native fruit to address its possible contribution to human-bear conflicts. The annual percent volume of human-provided food and garbage in black bear scats in YV decreased from 21% to 6% between 1978 and 2002, indicating YNP efforts have been effective. We found high use of non-native apples by bears throughout YV. Non-native food sources could be contributing to habituation and food conditioning, given their proximity to developed areas of YV. We recommend that YNP managers continue to (1) adapt and improve their management tools to address changing circumstances, (2) quantify the success of new management tools, and (3) reduce the availability of non-native food sources. ?? 2009 International Association for Bear Research and Management.

Ursus

Analysis of bank erosion on the Merced River, Yosemite Valley, Yosemite National Park, California, USA

Channel changes from 1919 to 1989 were documented in two study reaches of the Merced River in Yosemite National Park through a review of historical photographs and documents and a comparison of survey data. Bank erosion was prevalent and channel width increased an average of 27% in the upstream reach, where human use was concentrated. Here, trampling of the banks and riparian vegetation was common, and banks eroded on straight stretches as frequently as on meander bends. Six bridges in the upper reach constrict the channel by an average of 38% of the original width, causing severe erosion. In the downstream control reach, where human use was minimal, channel widths both decreased and increased, with a mean increase of only 4% since 1919. Bank erosion in the control reach occurred primarily on meander bends. The control reach also had denser stands of riparian vegetation and a higher frequency of large woody debris in channels. There is only one bridge in the lower reach, located at the downstream end. Since 1919, bank erosion in the impacted upstream reach contributed a significant amount of sediment (74,800 tonnes, equivalent to 2.0 t/km 2 /yr) to the river. An analysis of 75 years of precipitation and hydrologic records showed no trends responsible for bank erosion in the upper reach. Sediment input to the upper reach has not changed significantly during the study period. Floodplain soils are sandy, with low cohesion and are easily detached by lateral erosion. The degree of channel widening was positively correlated with the percentage of bare ground on the streambanks and low bank stability ratings. Low bank stability ratings were, in turn, strongly associated with high human use areas. Channel widening and bank erosion in the upper reach were due primarily to destruction of riparian vegetation by human trampling and the effect of bridge constrictions on high flow, and secondarily to poorly installed channel revetments. Several specific recommendations for river restoration were provided to park management.

California

Geologic history of the Yosemite Valley

The problem of the origin of the Yosemite Valley inherently demands a solution in quantitative terms. Its essence is, To what extent is the valley a product of glacial action, to what extent a product of stream erosion? The principal result of the investigations upon which this report is based is the determination within narrow limits of the preglacial depth of the Yosemite Valley and of other facts concerning its preglacial development which permit fairly definite estimates of the proportionate shares of work performed by stream and by glacier. The investigations comprise a detailed survey of the glacial and geomorphologic features of the Yosemite region and an equally intensive study of its rock formations, supplemented by reconnaissance work of both kinds in adjoining parts of the Sierra Nevada. The petrologic studies were made by Frank C. Calkins; the glacial and geomorphologic survey by Francois E. Matthes. Detailed mapping of the morainal system of the ancient Yosemite Glacier has served not only to determine the farthest limits reached by that glacier but to throw new light on the significance of the hanging valleys of the Yosemite region. It is reasonably certain that the glacier never extended more than about a mile beyond the site of El Portal. The hanging side valleys of the Merced Canyon below El Portal, therefore, hang not because of any glacial deepening suffered by that canyon. The explanation is offered that they hang because their streamlets have been unable to trench as rapidly as the Merced River since the rejuvenation of the Merced by the last uptilting of the Sierra Nevada. The streamlets were handicapped not only by their comparatively small volume but also by the fact that their courses trend northwestward and southeastward, substantially at right angles to the direction of the tilting, and therefore have remained essentially unsteepened, whereas the Merced's course trends southwestward, directly down the slope of the Sierra block, and therefore has been appreciably steepened. Projection of the longitudinal profiles of these hanging valleys forward to the axis of the Merced Canyon shows that they are closely accordant in height. Their profiles indicate a series of points on a former profile of the Merced with respect to which the side streams had graded their courses prior to the last uplift. This old profile can be extended upward into the glaciated part of the Merced Canyon above El Portal and even into the profoundly glaciated Yosemite Valley, accordant points being furnished by a number of hanging side valleys (due allowance being made for glacial erosion suffered by those valleys). However, not all the hanging valleys of the Yosemite region are accordant with this set. Several of them, including the upland valley of Yosemite Creek, constitute a separate set indicating another old profile of the Merced at a level 600 to 1,000 feet higher than the first. Others, including the hanging gulch of lower Bridalveil Creek, point to an old profile of the Merced about 1,200 feet lower than the first. There are thus three distinct sets of hanging valleys produced in three cycles of stream erosion. The valleys of the upper set, like those of the middle set, were left hanging as a result of rapid trenching by the Merced induced by an uplift of the range, there having been two such uplifts. Only the valleys of the lower set hang because of glacial deepening and widening of the Yosemite Valley, the cycle in which they were cut having been interrupted by the advent of the Pleistocene glaciers. They consequently indicate the preglacial depth of the Yosemite Valley. That depth, measured from the brow of El Capitan, was about 2,400 feet; measured from the rim at Glacier Point it was about 2,000 feet.

California

Extent of the Last Glacial Maximum (Tioga) glaciation in Yosemite National Park and vicinity, California

Yosemite National Park, located in the central Sierra Nevada in California, is an icon of the U.S. National Park system. It is famous for its many spectacular geologic features, which include the towering cliffs and hanging waterfalls of Yosemite Valley and the rounded granite domes, deep blue lakes, and jagged peaks and spires of the high country. More subtle but just as spectacular are the vast areas of polished granite, linear scratches, and isolated boulders scattered across the landscape. All of these features owe their origin, at least in part, to glaciers. Glaciers originating at the crest of the Sierra Nevada flowed down preexisting river canyons numerous times throughout the Quaternary Period (the past 2.6 million years). Although the field evidence for past glaciations is necessarily incomplete, at least seven distinct glacial periods have been identified in the Sierra Nevada, spanning a minimum of 1.5 million years. This map shows the extent of alpine icefields and associated valley glaciers in Yosemite National Park and vicinity during the most recent large glaciation, known as the Last Glacial Maximum, a globally recognized cold period characterized by low sea levels and the growth of ice sheets and mountain glaciers. In the Sierra Nevada, the Last Glacial Maximum glaciation is referred to as the Tioga glaciation. By virtue of being the most recent of the large Pleistocene glaciations, the evidence for the Tioga glaciation is abundant and relatively well preserved in the Yosemite landscape. The Tioga glaciation likely involved at least two, and perhaps as many as four, major glacial advances spanning the interval from approximately 27,000 to 15,000 years ago; the largest of these, representing the maximum ice extent shown on the map, occurred from approximately 21,000 to 18,000 years ago. Although it is possible that the various Tioga-age glaciers in the study area attained their maximum extents at slightly different times during the Last Glacial Maximum, for the purposes of this map we assume that they reached their maximum extents simultaneously. The maximum ice extent shown here may have occupied certain areas only briefly. During the maximum extent of the Tioga glaciation, glaciers and ice fields covered most areas in and around Yosemite National Park above 2,700 meters elevation, having a profound impact on the Yosemite landscape. In addition to sculpting most of the granite monoliths for which the park is famous, glaciation also dictated the distribution of many geological, hydrological, and ecological features. Thus, the lasting effects of Tioga glaciation are still readily observable in Yosemite National Park today.

California

The genetics of amphibian decline: population substructure and molecular differentiation in the Yosemite toad, Bufo canorus (Anura, Bufonidae) based on single-strand conformation polymorphism analysis (SSCP) and mitochondrial DNA sequence data

We present a comprehensive survey of genetic variation across the range of the narrowly distributed endemic Yosemite toad Bufo canorus , a declining amphibian restricted to the Sierra Nevada of California. Based on 322 bp of mitochondrial cytochrome b sequence data, we found limited support for the monophyly of B. canorus and its closely related congener B. exsul to the exclusion of the widespread western toad B. boreas . However, B. exsul was always phylogenetically nested within B. canorus , suggesting that the latter may not be monophyletic. SSCP (single-strand conformation polymorphism) analysis of 372 individual B. canorus from 28 localities in Yosemite and Kings Canyon National Parks revealed no shared haplotypes among these two regions and lead us to interpret these two parks as distinct management units for B. canorus . Within Yosemite, we found significant genetic substructure both at the level of major drainages and among breeding ponds. Kings Canyon samples show a different pattern, with substantial variation among breeding sites, but no substructure among drainages. Across the range of B. canorus as well as among Yosemite ponds, we found an isolation-by-distance pattern suggestive of a stepping stone model of migration. However, in Kings Canyon we found no hint of such a pattern, suggesting that movement patterns of toads may be quite different in these nearby parklands. Our data imply that management for B. canorus should focus at the individual pond level, and effective management may necessitate reintroductions if local extirpations occur. A brief review of other pond-breeding anurans suggests that highly structured populations are often the case, and thus that our results for B. canorus may be general for other species of frogs and toads.

Molecular Ecology

The geologic story of Yosemite National Park

Within 150 years, Yosemite has moved from great obscurity to worldwide fame as one of the most visited of our national parks. As a remarkable place where people can enjoy unparalleled scenes of natural beauty and where many easily observed geologic features are concentrated, the park is rivaled by few other areas on the planet. The majesty and immense variety of these features have inspired artists and photographers, intrigued tourists, and stirred controversy among geologists. Field studies in the Yosemite area have contributed to the development of our ideas about geologic processes, including the different actions of streams and glaciers in the evolution of the landscape, and the formation of granite, the basic bedrock of much of the Earth's continents. The park's role as a natural laboratory for geologic research cannot be overemphasized, and its investigation has led to many landmark studies by U.S. Geological Survey geologists over the past 70 years. In 1913, the first detailed program of research on the geology of the park and the origin ofYosemite Valley was begun by Francois Matthes and Frank Calkins. Their work, along with that of later generations of Survey geologists, myself included, serves as the basis for our present understanding of the geologic history of Yosemite and of the processes that formed and continue to mold its landscape. This book, which makes available in one volume a comprehensive summary of the current geologic knowledge of Yosemite National Park, is an excellent example of the Survey's continuing effort to provide earth-science information in the public service.

California

Oblique map showing maximum extent of 20,000-year-old (Tioga) glaciers, Yosemite National Park, central Sierra Nevada, California

This map shows the alpine ice field and associated valley glaciers at their maximum extent during the Tioga glaciation. The Tioga glaciation, which peaked about 15,000-20,OOO years ago, was the last major glaciation in the Sierra Nevada. The Tuolumne ice field fed not only the trunk glacier that moved down the Tuolumne River canyon through the present-day Hetch Hetchy Reservoir, but it also overflowed major ridge crests into many adjoining drainage systems. Some of the ice flowed over low passes to augment the flows moving from the Merced basin down through little Yosemite Valley. Tuolumne ice flowed southwest down the Tuolumne River into the Tenaya Lake basin and then down Tenaya Canyon to join the Merced glacier in Yosemite Valley. During the Tioga glaciation, the glacier in Yosemite Valley reached only as far as Bridalveil Meadow, although during a much earlier glaciation, a glacier extended about 10 miles farther down the Merced River to the vicinity of El Portal. Ice of the Tioga glaciation also flowed eastward from the summit region to cascade down the canyons that cut into the eastern escarpment of the Sierra Nevada [see errata, below]. Southeast of the present-day Yosemite Park, glaciers formed in the Mount Lyell region flowed east onto the Mono lowland and southeast and south down the Middle and North Forks of the San Joaquin River. In the southern part of the park, glaciers nearly reached to the present-day site of Wawona along the South Fork of the Merced River. At the time of the maximum extent of the Tioga glaciation, Lake Russell (Pleistocene Mono Lake) had a surface elevation of 6,800 feet, 425 feet higher than the 1980 elevation and 400 feet lower than its maximum level at the end of the Tioga glaciation. Only a few volcanic domes of the Mono Craters existed at the time of the Tioga glaciation. <.p> The distribution of vegetation, as suggested by the green overprint, is based on our interpretation. Forests were restricted to lower elevations than present day, but alpine plant species probably thrived where snow was seasonal, much as they occur today. Erratum The branching arrow on the map showing ice flowing from the basin east of Kuna Crest both northeastward around Mount Dana into the Mono Lake drainage and westward to the Tuolumne River is in error. No ice flowed northeastward from this basin through the site of Tioga Pass into the Mono Lake drainage. Although such an interpretation might be possible on the basis oJ the estimated elevation of the ice surface, the field evidence does not support it. A large and persistent boulder train of metamorphic rocks derived from Mount Dana and the mountain (Mount Gibbs) immediately to the south of Mount Dana has been mapped from near the base of Mount Dana westward toward the ice-filled gorge between Pettit Peak and Double Rock (the present Grand Canyon of the Tuolumne), indicating that ice from the west flank of Mount Dana flowed westward down the Tuolumne. In addition, glacial erratics of Cathedral Peak Granodiorite were observed near Tioga Pass (near the head of the erroneous arrow between Mount Dana and Mount Conness). These boulders must have come from the east face of Mount Conness or the mountain south of Mount Conness (White Mountain) and been transported by ice' flowing toward the Tioga Pass area, although the main mass of that ice turned eastward and flowed into the Mono Lake drainage. Tioga Pass was then the site of more-or-less stagnant ice between the Tuolumne drainage and that east of Mount Conness. Both the metamorphic boulder train and the glacial erratics of Cathedral Peak Granodiorite are incompatible with any flow of ice northeastward from the basin east of Kuna Crest into the Mono Lake drainage north of Mount Dana.

IMAP

A new data set of granitic rock strength values from Yosemite Valley, California: Applications to rock fall assessment

To explore connections between rock strength and rock falls, we undertook a comprehensive rock mechanics testing program for six granitic rock types in Yosemite Valley (California, USA) where rock falls are a common geomorphic and sometimes hazardous process. We collected samples from boulders located at the base of cliffs, with the inherent assumption that the intact boulders should provide reasonable estimates of full-strength values. Our testing program included unconfined compressive strength tests, triaxial compressive strength tests, Brazilian tensile strength tests, and Mode I fracture toughness strength testing using two different types of samples – chevron bend (CB) and cracked chevron notched Brazilian disk (CCNBD). Our results, consisting of 88 individual tests, provide the most detailed evaluation of rock strength in Yosemite Valley to date. These results provide the data needed to evaluate the various failure modes (e.g., shear failure of wedge instabilities, tensile failure of overhangs) that might be expected for rock falls from cliffs in Yosemite. We expect that these data will provide an important resource for the evaluation of rock falls and other geomorphological studies in Yosemite National Park.

California

Monitoring visitor activity and informal trail disturbance in Yosemite Valley meadows to assess temporal changes in use and impacts

Montane meadows provide vital habitat that supports ecosystems, regulate hydrological processes, and offer valuable recreational opportunities. Meadows account for 3 % of Yosemite National Park's area, including Yosemite Valley, and are particularly susceptible to human impacts such as formation of informal trails. We collected observational data on visitor activity and quantified social trail disturbance to compare with resource monitoring datasets and through similar parameters to Walden-Schreiner and Leung (2013) who studied visitor use and behavior in three Yosemite Valley meadows in 2011. We documented change in number of visitors per hour and primary activity pursued. We also compared trends of meadow disturbance (informal trail length and disturbed area) from the early 2000s - 2023. Informal trail length at El Capitan Meadow decreased from 2004 to 2018, followed by recent increases. Disturbed area for Cooks A, Sentinel A, Slaughterhouse B, Stoneman A, and Stoneman B sub-meadows increased from 2006 to 2023. Between 2011 and 2023, the proportion of those engaged in active versus stationary pursuits showed that visitors engaged in more active pursuits in two of three meadows. Moreover, there were >3.5 times more visitors per hour in Cooks, El Capitan, and Leidig meadows in 2023 compared to 2011, yet, most visitors utilized designated trails. Meadow locational context was linked to activity preference and types of impacts. Management strategies, such as fencing and signage have been effective at minimizing impacts in several meadows. Parsing nuances of informal trail use and drivers of disturbance for various meadows is crucial for informed park management decisions and actions.

California

Use of regression‐based models to map sensitivity of aquatic resources to atmospheric deposition in Yosemite National Park, USA

An abundance of exposed bedrock, sparse soil and vegetation, and fast hydrologic flushing rates make aquatic ecosystems in Yosemite National Park susceptible to nutrient enrichment and episodic acidification due to atmospheric deposition of nitrogen (N) and sulfur (S). In this study, multiple linear regression (MLR) models were created to estimate fall‐season nitrate and acid neutralizing capacity (ANC) in surface water in Yosemite wilderness. Input data included estimated winter N deposition, fall‐season surface‐water chemistry measurements at 52 sites, and basin characteristics derived from geographic information system layers of topography, geology, and vegetation. The MLR models accounted for 84% and 70% of the variance in surface‐water nitrate and ANC, respectively. Explanatory variables (and the sign of their coefficients) for nitrate included elevation (positive) and the abundance of neoglacial and talus deposits (positive), unvegetated terrain (positive), alluvium (negative), and riparian (negative) areas in the basins. Explanatory variables for ANC included basin area (positive) and the abundance of metamorphic rocks (positive), unvegetated terrain (negative), water (negative), and winter N deposition (negative) in the basins. The MLR equations were applied to 1407 stream reaches delineated in the National Hydrography Data Set for Yosemite, and maps of predicted surface‐water nitrate and ANC concentrations were created. Predicted surface‐water nitrate concentrations were highest in small, high‐elevation cirques, and concentrations declined downstream. Predicted ANC concentrations showed the opposite pattern, except in high‐elevation areas underlain by metamorphic rocks along the Sierran Crest, which had relatively high predicted ANC (>200 μ eq L −1 ). Maps were created to show where basin characteristics predispose aquatic resources to nutrient enrichment and acidification effects from N and S deposition. The maps can be used to help guide development of water‐quality programs designed to monitor and protect natural resources in national parks.

Yosemite Nataional Park

The role of environmental gradients in non-native plant invasion into burnt areas of Yosemite National Park, California

Fire is known to facilitate the invasion of many non-native plant species, but how invasion into burnt areas varies along environmental gradients is not well-understood. We used two pre-existing data sets to analyse patterns of invasion by non-native plant species into burnt areas along gradients of topography, soil and vegetation structure in Yosemite National Park, California, USA. A total of 46 non-native species (all herbaceous) were recorded in the two data sets. They occurred in all seven of the major plant formations in the park, but were least common in subalpine and upper montane conifer forests. There was no significant difference in species richness or cover of non-natives between burnt and unburnt areas for either data set, and environmental gradients had a stronger effect on patterns of non-native species distribution, abundance and species composition than burning. Cover and species richness of non-natives had significant positive correlations with slope (steepness) and herbaceous cover, while species richness had significant negative correlations with elevation, the number of years post-burn, and cover of woody vegetation. Non-native species comprised a relatively minor component of the vegetation in both burnt and unburnt areas in Yosemite (percentage species Combining double low line 4%, mean cover < 6.0%), and those species that did occur in burnt areas tended not to persist over time. The results indicate that in many western montane ecosystems, fire alone will not necessarily result in increased rates of invasion into burnt areas. However, it would be premature to conclude that non-native species could not affect post-fire succession patterns in these systems. Short fire-return intervals and high fire severity coupled with increased propagule pressure from areas used heavily by humans could still lead to high rates of invasion, establishment and spread even in highly protected areas such as Yosemite. ?? 2006 Blackwell Publishing Ltd.

Diversity and Distributions

A network extension of species occupancy models in a patchy environment applied to the Yosemite toad ( Anaxyrus canorus )

A central challenge of conservation biology is using limited data to predict rare species occurrence and identify conservation areas that play a disproportionate role in regional persistence. Where species occupy discrete patches in a landscape, such predictions require data about environmental quality of individual patches and the connectivity among high quality patches. We present a novel extension to species occupancy modeling that blends traditionalpredictions of individual patch environmental quality with network analysis to estimate connectivity characteristics using limited survey data. We demonstrate this approach using environmental and geospatial attributes to predict observed occupancy patterns of the Yosemite toad ( Anaxyrus (= Bufo) canorus ) across >2,500 meadows in Yosemite National Park (USA). A. canorus , a Federal Proposed Species, breeds in shallow water associated with meadows. Our generalized linear model (GLM) accurately predicted ~84% of true presence-absence data on a subset of data withheld for testing. The predicted environmental quality of each meadow was iteratively ‘boosted’ by the quality of neighbors within dispersal distance. We used this park-wide meadow connectivity network to estimate the relative influence of an individual Meadow’s ‘environmental quality’ versus its ‘network quality’ to predict: a) clusters of high quality breeding meadows potentially linked by dispersal, b) breeding meadows with high environmental quality that are isolated from other such meadows, c) breeding meadows with lower environmental quality where long-term persistence may critically depend on the network neighborhood, and d) breeding meadows with the biggest impact on park-wide breeding patterns. Combined with targeted data on dispersal, genetics, disease, and other potential stressors, these results can guide designation of core conservation areas for A. canorus in Yosemite National Park.

California