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A review of N-mixture models

N-mixture models were born in 2004 of the necessity to model animal population size from point counts with imperfect detection of individuals, where capture-recapture methods are infeasible. Initially developed for applications where population size was assumed constant, N-mixture models were extended in 2011 to include population dynamics, allowing application to populations whose size fluctuates during the study. A further extension in 2014 accommodates populations with multiple “states” such as age class or sex. More recent extensions model spatial movement of animals among habitat patches or the spatial spread of infectious disease in a human population. The core idea underlying this class of models is a hierarchical structure, where the observation model is defined conditional on the model for true abundance. This hierarchy allows researchers to incorporate information about observation and abundance processes, while permitting distinct inferences about elements affecting detection and those affecting abundance. Another benefit of the hierarchical approach is the ability to accommodate many existing sampling protocols such as removal sampling and distance sampling. One drawback to N-mixture models is that since they estimate both abundance and detection from replicated but unmarked counts, model parameters may not be clearly identifiable. A second drawback is that when observed counts are large, calculating the N-mixture likelihood is computationally infeasible. This difficulty motivated an approximate likelihood based on the normal approximation to the binomial. The normal approximation provides a diagnostic of parameter estimability based on the closed-form expression of the Fisher information matrix for a multivariate normal likelihood.

WIREs Computational Statistics

Three-dimensional trend mapping from wire-line logs

Mapping of lithofacies and porosities of stratigraphic units is complicated because these properties vary in three dimensions. The method of moments was proposed by Krumbein and Libby (1957) as a technique to aid in resolving this problem. Moments are easily computed from wireline logs and are simple statistics which summarize vertical variation in a log trace. Combinations of moment maps have proved useful in understanding vertical and lateral changes in lithology of sedimentary rock units. Although moments have meaning both as statistical descriptors and as mechanical properties, they also define polynomial curves which approximate lithologic changes as a function of depth. These polynomials can be fitted by least-squares methods, partitioning major trends in rock properties from finescale fluctuations. Analysis of variance yields the degree of fit of any polynomial and measures the proportion of vertical variability expressed by any moment or combination of moments. In addition, polynomial curves can be differentiated to determine depths at which pronounced expressions of facies occur and to determine the locations of boundaries between major lithologic subdivisions. Moments can be estimated at any location in an area by interpolating from log moments at control wells. A matrix algebra operation then converts moment estimates to coefficients of a polynomial function which describes a continuous curve of lithologic variation with depth. If this procedure is applied to a grid of geographic locations, the result is a model of variability in three dimensions. Resolution of the model is determined largely by number of moments used in its generation. The method is illustrated with an analysis of lithofacies in the Simpson Group of south-central Kansas; the three-dimensional model is shown as cross sections and slice maps. In this study, the gamma-ray log is used as a measure of shaliness of the unit. However, the method is general and can be applied, for example, to suites of neutron, density, or sonic logs to produce three-dimensional models of porosity in reservoir rocks. ?? 1985 Plenum Publishing Corporation.

Journal of the International Association for Mathe

Using the Lomb-Scargle method for wave statistics from gappy time series

Sandwich Town Neck Beach in Sandwich, MA, has experienced substantial erosion and has been the subject of efforts by the town and private landowners to limit the sand loss. Erosion has been particularly dramatic in the past five years with the loss of dwellings. Sandwich's nourishment efforts presented a unique opportunity for scientists at the U.S. Geological Survey Woods Hole Coastal and Marine Science Center to monitor beach morphology and to test new technologies and techniques such as geo-referenced drone imaging. Two bottom lander deployments were performed in Cape Cod Bay at a location that was key to model the fate of waves at Sandwich Town Neck Beach and to support the study of beach morphological evolution. The study period was after the town nourished the beach and during a time when several intense winter storms reshaped the beach and removed much of the nourished sand. A TRDI Workhorse Sentinel V ADCP was used for both deployments. For wave bursts, the instruments collected 2048 samples at 2 Hz every hour. The first deployment during the winter of 2016 returned good quality data. The second deployment during the following winter had gaps throughout the time series from a wiring problem in the external battery pack. The timing of the gaps was random, the duration approximately 100 s. While most of the bursts started at the top of each hour, many had 1-3 gaps within. Time series data with random gaps are problematic for computing spectral density, and thus, wave statistics. This kind of situation is familiar in other scientific disciplines such as astrophysics [1], where techniques exist to find stationary signals in sparse data. One of these methods is the Lomb-Scargle technique for computing periodograms. The most useful feature of the Lomb-Scargle (LS) method is that it allows the spectral analysis of incomplete records, without having to manipulate the record to extrapolate from or replace missing data. We compared the effectiveness of LS against common methods of averaging Fourier transforms such as a simple un-windowed Fast Fourier transform (FFT), Welch's method, and TRDI's Wavesmon software; methods that are commonly used in oceanography for non-gappy data. Synthetic data series that have been artificially modified to introduce gaps were used to evaluate the performance of each method. The LS approach was able to recover spectral density even with several 100-s gaps present. The method was applied here to the gappy and non-gappy data from both Sandwich deployments, and wave statistics were obtained and compared to the wave-buoy data. LS was used to process data that contains gaps that was rejected by Wavesmon, which was approximately 39% of the dataset. Significant wave height and peak period from LS compared well with buoy data. Mean period computed on gappy data using LS produced values biased low, compared with other methods when gaps were filled with the mean value. The LS technique has potential to uncover low-frequency signals such as infragravity waves from gappy records where the non-gappy segments are not long enough to resolve them. It has potential to unlock new information from older data sets.

Massachusetts