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Multi-regional synthesis of temporal trends in biotic assemblages in streams and rivers of the continental United States

Biotic assemblages in aquatic ecosystems are excellent integrators and indicators of changing environmental conditions within a watershed. Therefore, temporal changes in abiotic environmental variables often can be inferred from temporal changes in biotic assemblages. Algae, macroinvertebrate, and fish assemblage data were collected from 91 sampling sites in 4 geographic regions (northeastern/north-central, southeastern, south-central, and western), collectively encompassing the continental United States, from 1993 to 2009 as part of the U.S. Geological Survey National Water-Quality Assessment Program. This report uses a multivariate approach to synthesize temporal trends in biotic assemblages and correlations with relevant abiotic parameters as a function of biotic assemblage, geographic region, and land use. Of the three groups of biota, algal assemblages had temporal trends at the greatest percentage of sites. Of the regions, a greater percentage of sites in the northeastern/north-central and western regions had temporal trends in biotic assemblages. In terms of land use, a greater percentage of watersheds draining agricultural, urban, and undeveloped areas had significant temporal changes in biota, as compared to watersheds with mixed use. Correlations between biotic assemblages and abiotic variables indicate that, in general, macroinvertebrate assemblages correlated with water quality and fish assemblages correlated with physical habitat. Taken together, results indicate that there are regional differences in how individual biotic assemblages (algae, macroinvertebrates, and fish) respond to different abiotic drivers of change.

Continental United States

Desert tortoise annotated bibliography, 1991-2015

Introduction Agassiz’s desert tortoise, Gopherus agassizii , was considered a single species for 150 years after its discovery by James Cooper (1861), with a geographic range extending from southeastern California, southern Nevada, and southwestern Utah southward into northern Sinaloa, Mexico (Murphy and others, 2011). What was once G. agassizii is now recognized as a complex composed of three sister species, G. agassizii , G. morafkai , and G. evgoodei (Murphy and others, 2011; Edwards and others, 2016) (fig. 1). The geographic range of Agassiz’s Desert Tortoise ( G. agassizii ) is now limited to north and west of the Colorado River (Murphy and others, 2011), with the exception of a small population in northwestern Arizona (Edwards and others, 2015). This annotated bibliography is based on peer-reviewed journal articles published between January 1991 and December 2015 on Agassiz’s Desert Tortoise, with the geographic range as defined by Murphy and others (2011). Studies pertaining to other species of Gopherus (e.g., G. morafkai ), were included only when associated with G. agassizii . In addition to articles pertaining directly to desert tortoises, we compiled articles concerning threats to desert tortoises and the habitats they occupy. Similarly, we only included studies that encompass other habitat types when they were directly compared with habitats of G. agassizii . Agassiz’s Desert Tortoise (hereinafter called desert tortoise) is a state- and federally-listed threatened species (U.S. Fish and Wildlife Service, 1990; California Department of Fish and Game, 2015). The first population federally listed as threatened occurred on the Beaver Dam Slope, Utah (U.S. Fish and Wildlife Service, 1980). In 1990, the entire geographic range north and west of the Colorado River was federally listed as threatened (U.S. Fish and Wildlife Service, 1990), with the exception being a small population in northwestern Arizona. The purpose of this annotated bibliography is to support recovery efforts for the species, because populations have continued to decline in spite of designation of critical habitat and publication of a recovery plan (U.S. Fish and Wildlife Service, 1994). For example, between 2005 and 2014, populations in critical habitats declined about 50% (U.S. Fish and Wildlife Service, 2015).

Open-File Report

Southeastern Pennsylvania ground water protected area

Geographical Information System data sets were developed by the U.S. Geological Survey in cooperation with the Delaware River Basin Commission (DRBC). These data are related to groundwater resources for the DRBC's Southeastern Pennsylvania Groundwater Protected Area.

Open-File Report

Southeastern U.S. vegetation response to ENSO Events (1989–1999)

El Niño/Southern Oscillation (ENSO) is considered one of the most powerful forces driving anomalous global weather patterns. Large-scale seasonal precipitation and temperature changes influenced by ENSO have been examined in many areas of the world. The southeastern United States is one of the regions affected by ENSO events. In this study, remote sensing detection of vegetation response to ENSO phases is demonstrated with one-kilometer biweekly Normalized Difference Vegetation Index (NDVI) data (1989–1999) derived from the Advanced Very High Resolution Radiometer(AVHRR). The impacts of three ENSO phases, cold, warm and neutral, on vegetation were analyzed with a focus on two vegetation cover types, two seasons and two geographic regions within the southeastern U.S. Significant ENSO effects on vegetation were found in cropland and forest vegetation cover types based on image and statistical analysis of the NDVI data. The results indicate that vegetation condition was optimal during the ENSO neutral phase for both agricultural and natural vegetation.

Climatic Change

Wildlife associates of nine-banded armadillo (Dasypus novemcinctus) burrows in Arkansas

The Nine-banded Armadillo ( Dasypus novemcinctus ) is a widespread burrowing species with an expanding geographic range across the southeastern and midwestern United States. Armadillos dig numerous, large burrows within their home ranges and these burrows are likely used by a diverse suite of wildlife species as has been reported for other burrowing ecosystem engineers such as Gopher Tortoises ( Gopherus polyphemus ), Desert Tortoises ( Gopherus agassizi ), and Black-tailed Prairie Dogs ( Cynomys ludovicianus ). We used motion-triggered game cameras at 35 armadillo burrows in 4 ecoregions of Arkansas and documented 19 species of mammals, 4 species of reptile, 1 species of amphibian, and 40 species of bird interacting with burrows. Bobcat ( Lynx rufus ), Coyote ( Canis latrans ), Eastern Cottontail ( Sylvilagus floridanus ), Gray Fox ( Urocyon cinereoargenteus ), Gray Squirrel ( Sciurus carolinensis ), Northern Raccoon ( Procyon lotor ), Virginia Opossum ( Didelphis virginiana ), and unidentified rodents (mice and rats) were documented using burrows in all four ecoregions. We documented wildlife hunting, seeking shelter, rearing young in, and taking over and modifying armadillo burrows. The rate of use was highest in the Mississippi Alluvial Valley, a landscape dominated by agriculture, where natural refugia may be limited and rodents are abundant. Armadillo burrows are clearly visited and used by numerous wildlife species to fulfill various life stage requirements, and this list will likely expand if more attention is devoted to understanding the role of armadillos burrows. Armadillos are important ecosystem engineers, and their ecological role warrants more investigation and attention as opposed to only being viewed and managed as agricultural and garden pests.

Arkansas

Digital surfaces and hydrogeologic data for the Mesozoic through early Tertiary rocks in the Southeastern Coastal Plain in parts of Mississippi, Alabama, Georgia, South Carolina, and Florida

A digital dataset of hydrogeologic data for Mesozoic through early Tertiary rocks in the Southeastern Coastal Plain was developed using data from five U.S. Geological Survey (USGS) reports published between 1951 and 1996. These reports contain maps and data depicting the extent and elevation of the Southeast Coastal Plain stratigraphic and hydrogeologic units in Florida and parts of Mississippi, Alabama, Georgia, and South Carolina. The reports are: Professional Paper 1410-B (Renken, 1996), Professional Paper 1088 (Brown and others, 1979), Professional Paper 524-G (Applin and Applin, 1967), Professional Paper 447 (Applin and Applin, 1965), and Circular 91 (Applin, 1951). The digital dataset provides hydrogeologic data for the USGS Energy Resources Program assessment of potential reservoirs for carbon sequestration and for the USGS Groundwater Resource Program assessment of saline aquifers in the southeastern United States. A Geographic Information System (ArcGIS 9.3.1) was used to construct 33 digital (raster) surfaces representing the top or base of key stratigraphic and hydrogeologic units. In addition, the Geographic Information System was used to generate 102 geo-referenced scanned maps from the five reports and a geo-database containing structural and thickness contours, faults, extent polygons, and common features. The dataset also includes point data of well construction and stratigraphic elevations and scanned images of two geologic cross sections and a nomenclature chart.

Alabama, Florida, Georgia, Mississippi, South Caro

Selected papers in the applied computer sciences 1992

This compilation of short papers reports on technical advances in the applied computer sciences. The papers describe computer applications in support of earth science investigations and research. This is the third volume in the series "Selected Papers in the Applied Computer Sciences." Listed below are the topics addressed in the compilation: Integration of geographic information systems and expert systems for resource management, Visualization of topography using digital image processing, Development of a ground-water data base for the southeastern Uited States using a geographic information system, Integration and aggregation of stream-drainage data using a geographic information system, Procedures used in production of digital geologic coverage using compact disc read-only memory (CD-ROM) technology, and Automated methods for producing a technical publication on estimated water use in the United States.

Bulletin

Occurrence of Pesticides in Ground Water of Wyoming, 1995-2006

Little existing information was available describing pesticide occurrence in ground water of Wyoming, so the U.S. Geological Survey, in cooperation with the Wyoming Department of Agriculture and the Wyoming Department of Environmental Quality on behalf of the Wyoming Ground-water and Pesticides Strategy Committee, collected ground-water samples twice (during late summer/early fall and spring) from 296 wells during 1995-2006 to characterize pesticide occurrence. Sampling focused on the State's ground water that was mapped as the most vulnerable to pesticide contamination because of either inherent hydrogeologic sensitivity (for example, shallow water table or highly permeable aquifer materials) or a combination of sensitivity and associated land use. Because of variations in reporting limits among different compounds and for the same compound during this study, pesticide detections were recensored to two different assessment levels to facilitate qualitative and quantitative examination of pesticide detection frequencies - a common assessment level (CAL) of 0.07 microgram per liter and an assessment level that differed by compound, referred to herein as a compound-specific assessment level (CSAL). Because of severe data censoring (fewer than 50 percent of the data are greater than laboratory reporting limits), categorical statistical methods were used exclusively for quantitative comparisons of pesticide detection frequencies between seasons and among various natural and anthropogenic (human-related) characteristics. One or more pesticides were detected at concentrations greater than the CAL in water from about 23 percent of wells sampled in the fall and from about 22 percent of wells sampled in the spring. Mixtures of two or more pesticides occurred at concentrations greater than the CAL in about 9 percent of wells sampled in the fall and in about 10 percent of wells sampled in the spring. At least 74 percent of pesticides detected were classified as herbicides. Considering only detections using the CAL, triazine pesticides were detected much more frequently than all other pesticide classes, and the number of different pesticides classified as triazines was the largest of all classes. More pesticides were detected at concentrations greater than the CSALs in water from wells sampled in the fall (28 different pesticides) than in the spring (21 different pesticides). Many pesticides were detected infrequently as nearly one-half of pesticides detected in the fall and spring at concentrations greater than the CSALs were detected only in one well. Using the CSALs for pesticides analyzed for in 11 or more wells, only five pesticides (atrazine, prometon, tebuthiuron, picloram, and 3,4-dichloroaniline, listed in order of decreasing detection frequency) were each detected in water from more than 5 percent of sampled wells. Atrazine was the pesticide detected most frequently at concentrations greater than the CSAL. Concentrations of detected pesticides generally were small (less than 1 microgram per liter), although many infrequent detections at larger concentrations were noted. All detected pesticide concentrations were smaller than U.S. Environmental Protection Agency (USEPA) drinking-water standards or applicable health advisories. Most concentrations were at least an order of magnitude smaller; however, many pesticides did not have standards or advisories. The largest percentage of pesticide detections and the largest number of different pesticides detected were in samples from wells located in the Bighorn Basin and High Plains/ Casper Arch geographic areas of north-central and southeastern Wyoming. Prometon was the only pesticide detected in all eight geographic areas of the State. Pesticides were detected much more frequently in samples from wells located in predominantly urban areas than in samples from wells located in predominantly agricultural or mixed areas. Pesticides were detected distinctly less often in sa

Scientific Investigations Report

Water Budget and the Effects of Land-Use Changes on Ground-Water Recharge, Oahu, Hawaii

Detailed water budgets calculated for southern and southeastern Oahu are used with a geographic information system to develop simplified methods for estimating areal water budgets for predevelopment and mid-1980's land use. The methods were applied to estimate water budgets for the Waianae area of western Oahu, and for north-central, southern, and southeastern Oahu. A water budget was calculated for windward Oahu by developing a separate geographic information system model of the area. The water budgets for these areas were combined into a single water budget for the entire island. The geographic information system model was used to calculate mid-1980's ground-water recharge to small areas of specific interest and the distribution of recharge by geologic formation. The most significant changes in the water budget and ground-water recharge have occurred in north-central and southern Oahu as a result of large-scale agricultural development and urbanization by the mid-1980's. Runoff increased by 23 million gallons per day in southern Oahu where extensive urban areas have been developed. Evapotranspiration increased by 8 million gallons per day in southern Oahu and 28 million gallons per day in north-central Oahu as result of the 146 million gallons per day of agricultural irrigation. Ground-water recharge increased in both areas: by about 56 million gallons per day in southern Oahu and by about 32 million gallons per day in north-central Oahu. Predevelopment ground-water recharge to Oahu was an estimated 792 million gallons per day. Changes in land-use practices in the mid-1980's resulted in an estimated island-wide recharge of 880 million gallons per day.

Professional Paper

Analysis of surface water trends for the conterminous United States using MODIS satellite data, 2003–2019

Satellite imagery is commonly used to map surface water extents over time, but many approaches yield discontinuous records resulting from cloud obstruction or image archive gaps. We applied the Dynamic Surface Water Extent (DSWE) model to downscaled (250-m) daily Moderate Resolution Imaging Spectroradiometer (MODIS) data in Google Earth Engine to generate monthly surface water maps for the conterminous United States (US) from 2003 through 2019. The aggregation of daily observations to monthly maps of maximum water extent produced records with diminished cloud and cloud shadow effects across most of the country. We used the continuous monthly record to analyze spatiotemporal surface water trends stratified within Environmental Protection Agency Ecoregions. Although not all ecoregion trends were significant ( p < 0.05), results indicate that much of the western and eastern US underwent a decline in surface water over the 17-year period, while many ecoregions in the Great Plains had positive trends. Trends were also generated from monthly streamgage discharge records and compared to surface water trends from the same ecoregion. These approaches agreed on the directionality of trend detected for 54 of 85 ecoregions, particularly across the Great Plains and portions of the western US, whereas trends were not congruent in select western deserts, the Great Lakes region, and the southeastern US. By describing the geographic distribution of surface water over time and comparing these records to instrumented discharge data across the conterminous US, our findings demonstrate the efficacy of using satellite imagery to monitor surface water dynamics and supplement traditional instrumented monitoring.

Water Resources Research

Joint seasonality in geographic and ecological spaces, illustrated with a partially migratory bird

As most species live in seasonal environments, considering varying conditions is essential to understand species dynamics in both geographic and ecological spaces. Both resident and migratory species need to contend with seasonality and balance settling in favorable areas with tracking favorable environmental conditions during the year. We present an exploratory framework to jointly investigate a species' niche in geographic and ecological spaces, applied to wood storks (Mycteria americana), which are partially migratory wading birds, in the southeastern United States. We concurrently described monthly geographic distributions and climatic niches based on temperature and precipitation. Geographic distributions of wood storks were more similar throughout the year than were climatic niches, suggesting that birds stay within specific areas seasonally, rather than tracking areas of similar climate. However, wood storks expressed consistent selection of warm areas during the winter, and wet areas during the summer, indicating that the selection of seasonal ranges may be directly related to environmental conditions across the entire range. Our flexible framework, which simultaneously considered geographic and ecological spaces, suggested that tracking climate alone did not explain seasonal distributions of wood storks in breeding and non‐breeding areas.

Alabama, Florida, Georgia, Mississippi, South Caro

Genetic discontinuity among regional populations of Lophelia perfusa in the North Atlantic Ocean

Knowledge of the degree to which populations are connected through larval dispersal is imperative to effective management, yet little is known about larval dispersal ability or population connectivity in Lophelia pertusa, the dominant framework-forming coral on the continental slope in the North Atlantic Ocean. Using nine microsatellite DNA markers, we assessed the spatial scale and pattern of genetic connectivity across a large portion of the range of L. pertusa in the North Atlantic Ocean. A Bayesian modeling approach found four distinct genetic groupings corresponding to ocean regions: Gulf of Mexico, coastal southeastern U.S., New England Seamounts, and eastern North Atlantic Ocean. An isolation-by-distance pattern was supported across the study area. Estimates of pairwise population differentiation were greatest with the deepest populations, the New England Seamounts (average FST = 0.156). Differentiation was intermediate with the eastern North Atlantic populations (FST = 0.085), and smallest between southeastern U.S. and Gulf of Mexico populations (FST = 0.019), with evidence of admixture off the southeastern Florida peninsula. Connectivity across larger geographic distances within regions suggests that some larvae are broadly dispersed. Heterozygote deficiencies were detected within the majority of localities suggesting deviation from random mating. Gene flow between ocean regions appears restricted, thus, the most effective management scheme for L. pertusa involves regional reserve networks

Conservation Genetics

Hydrogeology and simulation of groundwater flow and land-surface subsidence in the northern part of the Gulf Coast aquifer system, Texas, 1891-2009

In cooperation with the Harris&ndash;Galveston Subsidence District, Fort Bend Subsidence District, and Lone Star Groundwater Conservation District, the U.S. Geological Survey developed and calibrated the Houston Area Groundwater Model (HAGM), which simulates groundwater flow and land-surface subsidence in the northern part of the Gulf Coast aquifer system in Texas from predevelopment (before 1891) through 2009. Withdrawal of groundwater since development of the aquifer system has resulted in potentiometric surface (hydraulic head, or head) declines in the Gulf Coast aquifer system and land-surface subsidence (primarily in the Houston area) from depressurization and compaction of clay layers interbedded in the aquifer sediments. The MODFLOW-2000 groundwater flow model described in this report comprises four layers, one for each of the hydrogeologic units of the aquifer system except the Catahoula confining system, the assumed no-flow base of the system. The HAGM is composed of 137 rows and 245 columns of 1-square-mile grid cells with lateral no-flow boundaries at the extent of each hydrogeologic unit to the northwest, at groundwater divides associated with large rivers to the southwest and northeast, and at the downdip limit of freshwater to the southeast. The model was calibrated within the specified criteria by using trial-and-error adjustment of selected model-input data in a series of transient simulations until the model output (potentiometric surfaces, land-surface subsidence, and selected water-budget components) acceptably reproduced field measured (or estimated) aquifer responses including water level and subsidence. The HAGM-simulated subsidence generally compared well to 26 Predictions Relating Effective Stress to Subsidence (PRESS) models in Harris, Galveston, and Fort Bend Counties. Simulated HAGM results indicate that as much as 10 feet (ft) of subsidence has occurred in southeastern Harris County. Measured subsidence and model results indicate that a larger geographic area encompassing this area of maximum subsidence and much of central to southeastern Harris County has subsided at least 6 ft. For the western part of the study area, the HAGM simulated as much as 3 ft of subsidence in Wharton, Jackson, and Matagorda Counties. For the eastern part of the study area, the HAGM simulated as much as 3 ft of subsidence at the boundary of Hardin and Jasper Counties. Additionally, in the southeastern part of the study area in Orange County, the HAGM simulated as much as 3 ft of subsidence. Measured subsidence for these areas in the western and eastern parts of the HAGM has not been documented.

Texas

A putative hybrid swarm within Oonopsis foliosa (Asteraceae: Astereae)

Oo??nopsis foliosa var. foliosa and var. monocephala are endemic to short-grass steppe of southeastern Colorado and until recently were considered geographically disjunct. The only known qualitative feature separating these 2 varieties is floral head type; var. foliosa has radiate heads, whereas var. monocephala heads are discoid. Sympatry between these varieties is restricted to a small area in which a range of parental types and intermediate head morphologies is observed. We used distribution mapping, morphometric analyses, chromosome cytology, and pollen stainability to characterize the sympatric zone. Morphometrics confirms that the only discrete difference between var. foliosa and var. monocephala is radiate versus discoid heads, respectively. The outer florets of putative hybrid individuals ranged from conspicuously elongated yet radially symmetric disc-floret corollas, to elongated radially asymmetric bilabiate- or deeply cleft corollas, to stunted ray florets with appendages remnant of corolla lobes. Chromosome cytology of pollen mother cells from both putative parental varieties and a series of intermediate morphological types collected at the sympatric zone reveal evidence of translocation heterozygosity. Pollen stainability shows no significant differences in viability between the parental varieties and putative hybrids. The restricted distribution of putative hybrids to a narrow zone of sympatry between the parental types and the presence of meiotic chromosome-pairing anomalies in these intermediate plants are consistent with a hybrid origin. The high stainability of putative-hybrid pollen adds to a growing body of evidence that hybrids are not universally unfit.

Western North American Naturalist

Repeated drought alters resistance of seed bank regeneration in baldcypress swamps of North America

Recurring drying and wetting events are likely to increase in frequency and intensity in predicted future droughts in the central USA and alter the regeneration potential of species. We explored the resistance of seed banks to successive droughts in 53 sites across the nine locations in baldcypress swamps in the southeastern USA. Along the Mississippi River Alluvial Valley and northern Gulf of Mexico, we investigated the capacity of seed banks to retain viable seeds after successive periods of drying and wetting in a greenhouse study. Mean differences in species richness and seed density were compared to examine the interactions of successive droughts, geographical location and water regime. The results showed that both species richness and total density of germinating seedlings decreased over repeated drought trials. These responses were more pronounced in geographical areas with higher annual mean temperature. In seed banks across the southeastern swamp region, most species were exhausted after Trial 2 or 3, except for semiaquatic species in Illinois and Tennessee, and aquatic species in Texas. Distinct geographical trends in seed bank resistance to drought demonstrate that climate-induced drying of baldcypress swamps could influence the regeneration of species differently across their ranges. Despite the health of adult individuals, lack of regeneration may push ecosystems into a relict status. Seed bank depletion by germination without replenishment may be a major conservation threat in a future with recurring droughts far less severe than megadrought. Nevertheless, the protection of moist refugia might aid conservation.

Arkansas, Florida, Illinois, Louisiana, Mississipp

Mercury in feathers from Chilean birds: Influence of location, feeding strategy, and taxonomic affiliation

This study reports baseline concentrations of mercury (Hg) in feathers from different species of birds sampled at various locations off the Chilean coast (Southeastern Pacific). Hg concentrations were evaluated in relation to geographic location, taxonomic affiliation, and feeding strategies. Between January and March of 1995, we collected mature contour feathers from 116 birds belonging to 22 species, mostly seabirds. Birds were collected from 10 different locations (26??09???S, 70??40???W to 54??56???S, 67??37???W). Feather Hg concentrations ranged from 0.11 to 13 ??gg-1 dry weight. We found differences in feather Hg concentrations across taxonomic groups, with highest concentrations in petrels, shearwaters, and albatrosses (Procellaridae), followed by boobies (Sulidae), gulls, terns, skuas (Laridae) and cormorants (Phalacrocoracidae). Ibises and oystercatchers (Threskiornithidae and Charadriidae) had intermediate values, whereas ducks and geese (Anatidae) contained the least amount of Hg. Oceanic species preying on mesopelagic fish (the Procellariformes albatrosses, petrels, and fulmars) had over twice as much Hg (overall average of 3.9 ??gg-1) when compared to the rest of the species sampled (overall average of 1.5 ??gg-1). We did not find higher Hg concentrations in birds inhabiting the more heavily industrialized and urbanized areas of the country (central and northern regions), but in birds inhabiting the remote Juan Ferna??ndez Archipelago. This is not surprising, since all the Procellariformes (the group with highest Hg values in this study) were collected from these islands. Except for Hg in Kermadec petrels (mean of 12 ??gg-1), the range of Hg values reported here (0.11-7.3 ??gg-1) fell below those known to cause adverse health and reproductive effects in birds. ?? 2002 Elsevier Science Ltd. All rights reserved.

Marine Pollution Bulletin