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At least 19 recordsLinked to original sources
USGS2008

Thiamine Deficiency Complex Workshop final report: November 6-7, 2008, Ann Arbor, MI

Fry mortality which was first observed in the late 1960s in Great Lakes salmonines and in Baltic Sea salmon in 1974 has now been linked to thiamine deficiency (historically referred to as Early Mortality Syndrome, or EMS and M74, respectively). Over the past 14 years significant strides have been made in our understanding of this perplexing problem. It is now known that thiamine deficiency causes embryonic mortality in these salmonids. Both overt mortality and secondary effects of thiamine deficiency are observed in juvenile and adult animals. Collectively the morbidity and mortality (fry and adult mortality, secondary metabolic and behavior affects in juveniles and adult fish) are referred to as Thiamine Deficiency Complex (TDC). A workshop was held in Ann Arbor, MI on 6-7 November 2008 that brought together 38 federal, state, provincial, tribal and university scientists to share information, present data and discuss the latest observations on thiamine status of aquatic animals with thiamine deficiency and the causative agent, thiaminase. Twenty presentations (13 oral and 7 posters) detailed current knowledge. In Lake Huron, low alewife Alosa pseudoharengus abundance has persisted and egg thiamine concentrations in salmonines continue to increase, along with evidence of natural reproduction in lake trout Salvelinus namaycush. Lake Michigan Chinook salmon Oncorhynchus tshawytscha appear to have a lower thiamine requirement than other salmonids in the lake. Lake Ontario American eel Anguilla rostrata foraging on alewife have approximately one third the muscle thiamine compared to eels not feeding on alewife, suggesting that eels may be suffering from thiamine deficiency. Secondary effects of low thiamine exist in Great Lakes salmonines and should not be ignored. Thiaminase activity in dreissenid mussels is extremely high but a connection to TDC has not been made. Thiaminase in net plankton was found more consistently in lakes Michigan and Ontario than other lakes evaluated. The biological role of thiaminase I, associated with thiamine deficiency, remains to be determined whereas thiaminase II has been reported to be part of a salvage pathway leading to thiamine synthesis. The use of gene array technology and 3-dimensional histology is adding new understanding to the affects of thiamine deficiency. Research is needed to determine the thiamine status of species feeding on dreissenids, the environmental sources of thiaminase and the biological role of thiaminase I.

Research Status Report↗
USGS2007

Ground motion issues for seismic analysis of tall buildings: A status report

The Pacific Earthquake Engineering Research Center (PEER) is coordinating a major multidisciplinary programme, the Tall Buildings Initiative (TBI), to address critical technical issues related to the design and analysis of new tall buildings located in coastal California. The authors of this paper, listed alphabetically, are involved in various research studies related to ground motion modelling, selection, modification and simulation for analysis of tall buildings. This paper summarizes the scope and progress of ongoing activities related to ground motion issues for response history analysis of tall buildings.

Structural Design of Tall and Special Buildings↗
USGS2005

Geologic and hydrogeologic framework of the Espanola basin -- Proceedings of the 4th annual Espanola Basin Workshop, Santa Fe, New Mexico, March 1-3, 2005

This report presents abstracts of technical studies that pertain to the hydrogeologic framework of the This report presents abstracts of technical studies that pertain to the hydrogeologic framework of the Española basin, a major subbasin of the Cenozoic Rio Grande rift. Sediments and interbedded volcanic rocks that fill the Española basin comprise an aquifer system that is an important source of water for many residents of the basin, including people in the cities of Santa Fe, Española, and Los Alamos as well as Native Americans in eleven Pueblos. The abstracts describe results of technical studies that were presented either as poster exhibits or oral presentations at the forth-annual Española basin workshop, held March 1-2 of 2005 in Santa Fe, New Mexico. The principal goal of this workshop was to share information about ongoing studies. The Española basin workshop was hosted by the Española basin technical advisory group (EBTAG) and sponsored by the U.S. Geological Survey, the New Mexico Bureau of Geology and Mineral Resources, and both the Water Research Technical Assistance Office and the Groundwater Protection Program of Los Alamos National Laboratory. Abstracts in this report have been grouped into six information themes: Basic Water Data, Water Quality and Water Chemistry, Water Balance and Stream/Aquifer Interaction, Data Integration and Hydrologic Model Testing, Three-Dimensional Hydrogeological Architecture, and Geologic Framework. Taken together, the abstracts in this report provide a view of the current status of hydrogeologic research within the Española basin. , a major subbasin of the Cenozoic Rio Grande rift. Sediments and interbedded volcanic rocks that fill the Española basin comprise an aquifer system that is an important source of water for many residents of the basin, including people in the cities of Santa Fe, Española, and Los Alamos as well as Native Americans in eleven Pueblos. The abstracts describe results of technical studies that were presented either as poster exhibits or oral presentations at the forth-annual Española basin workshop, held March 1-2 of 2005 in Santa Fe, New Mexico. The principal goal of this workshop was to share information about ongoing studies. The Española basin workshop was hosted by the Española basin technical advisory group (EBTAG) and sponsored by the U.S. Geological Survey, the New Mexico Bureau of Geology and Mineral Resources, and both the Water Research Technical Assistance Office and the Groundwater Protection Program of Los Alamos National Laboratory. Abstracts in this report have been grouped into six information themes: Basic Water Data, Water Quality and Water Chemistry, Water Balance and Stream/Aquifer Interaction, Data Integration and Hydrologic Model Testing, Three-Dimensional Hydrogeological Architecture, and Geologic Framework. Taken together, the abstracts in this report provide a view of the current status of hydrogeologic research within the Española basin.

New Mexico↗
USGS2006

The 'Orsten': more than a Cambrian Konservat-Lagerstätte yielding exceptional preservation

In several areas of southern Sweden, limestone nodules, locally called Orsten occur within bituminous alum shales. These shales and nodules were deposited under dysoxic conditions at the bottom of what was most likely a shallow sea during the late Middle to Upper Cambrian (ca. 500 million years ago). Subsequently, the name ‘Orsten’ has been referred to particular, mainly arthropod, fossils from such nodules, and, in a wider sense, to the specific type of preservation of minute fossil through secondarily phosphatization. This preservation is exceptional in yielding uncompacted and diagenetically undeformed three-dimensional fossils. ‘Orsten’-type preservation resulted from incrustation of a thin external layer and also by impregnation by calcium phosphate and, therefore, mineralization of the surface of the former animals during early diagenesis. Primarily, this type of preservation seems to have affected only cuticle-bearing metazoans such as cycloneuralian nemathelminths and arthropods. ‘Orsten’ preservation in this sense seems to be limited by size, in having yielded no partial or complete animals larger than 2 mm. On the other end of the scale, even larvae 100 μm long are preserved, often more complete than larger specimens, and details such as setules and pores smaller than 1 μm can be observed. Fossils preserved in such a manner are almost exclusively hollow carcasses, but can be filled secondarily; less common are completely phosphatized compact specimens. The high quality of preservation makes the Swedish ‘Orsten’ a typical Konservat-Lagerstätte. Yet, its special type of preservation is more widespread in time and geographical distribution than assumed initially, and the origin of the phosphate is not necessarily restricted just to one source. Subsequent to the first discoveries of limb fragments of Cambrian arthropods in 1975, animals in this special preservational type have been discovered in several continents and across a broad stratigraphic range including even Proterozoic strata. The latter have yielded early cleavage and metazoan embryonic stages, expanding knowledge on the preservational capacities of the ‘Orsten’. Here, we report the recent status of our research on the ‘Orsten’ and give perspectives for future exploration on a worldwide scale, particularly in light of a recently formed international research group named Center of Orsten Research and Exploration (C.O.R.E.).

Palaeoworld↗
USGS2010

Extended abstracts from the Coastal Habitats in Puget Sound (CHIPS) 2006 Workshop

Puget Sound is the second largest estuary in the United States. Its unique geology, climate, and nutrient-rich waters produce and sustain biologically productive coastal habitats. These same natural characteristics also contribute to a high quality of life that has led to a significant growth in human population and associated development. This population growth, and the accompanying rural and urban development, has played a role in degrading Puget Sound ecosystems, including declines in fish and wildlife populations, water-quality issues, and loss and degradation of coastal habitats. In response to these ecosystem declines and the potential for strategic large-scale preservation and restoration, a coalition of local, State, and Federal agencies, including the private sector, Tribes, and local universities, initiated the Puget Sound Nearshore Ecosystem Restoration Project (PSNERP). The Nearshore Science Team (NST) of PSNERP, along with the U.S. Geological Survey, developed a Science Strategy and Research Plan (Gelfenbaum and others, 2006) to help guide science activities associated with nearshore ecosystem restoration. Implementation of the Research Plan includes a call for State and Federal agencies to direct scientific studies to support PSNERP information needs. In addition, the overall Science Strategy promotes greater communication with decision makers and dissemination of scientific results to the broader scientific community. On November 14–16, 2006, the U.S. Geological Survey sponsored an interdisciplinary Coastal Habitats in Puget Sound (CHIPS) Research Workshop at Fort Worden State Park, Port Townsend, Washington. The main goals of the workshop were to coordinate, integrate, and link research on the nearshore of Puget Sound. Presented research focused on three themes: (1) restoration of large river deltas; (2) recovery of the nearshore ecosystem of the Elwha River; and (3) effects of urbanization on nearshore ecosystems. The more than 35 presentations covered a wide range of ongoing inter-disciplinary research, including studies of sediment geochemistry of aquatic environments, sediment budgets, tracking fish pathways, expansion of invasive forams, beach and nearshore sedimentary environments, using influence diagrams as a decision support tool, forage fish, submarine groundwater, and much, much more. The primary focus within these themes was on developing information on the physical, chemical, and biological processes, as well as the human dimensions, associated with the restoration or rehabilitation of the nearshore environment. The workshop was an excellent opportunity for USGS scientists and collaborators who are working on Puget Sound coastal habitats to present their preliminary findings, discuss upcoming research, and to identify opportunities for interdisciplinary collaboration. A compilation of extended abstracts from workshop participants, this proceedings volume serves as a useful reference for attendees of the workshop and for those unable to attend. Taken together, the abstracts in this report provide a view of the current status of USGS multidisciplinary research on Puget Sound coastal habitats.

Open-File Report↗
USGS2009

Rebuttal of "Polar bear population forecasts: a public-policy forecasting audit"

Observed declines in the Arctic sea ice have resulted in a variety of negative effects on polar bears ( Ursus maritimus ). Projections for additional future declines in sea ice resulted in a proposal to list polar bears as a threatened species under the United States Endangered Species Act. To provide information for the Department of the Interior's listing-decision process, the US Geological Survey (USGS) produced a series of nine research reports evaluating the present and future status of polar bears throughout their range. In response, Armstrong et al. [Armstrong, J. S., K. C. Green, W. Soon. 2008. Polar bear population forecasts: A public-policy forecasting audit. Interfaces 38 (5) 382–405], which we will refer to as AGS, performed an audit of two of these nine reports. AGS claimed that the general circulation models upon which the USGS reports relied were not valid forecasting tools, that USGS researchers were not objective or lacked independence from policy decisions, that they did not utilize all available information in constructing their forecasts, and that they violated numerous principles of forecasting espoused by AGS. AGS (p. 382) concluded that the two USGS reports were "unscientific and inconsequential to decision makers." We evaluate the AGS audit and show how AGS are mistaken or misleading on every claim. We provide evidence that general circulation models are useful in forecasting future climate conditions and that corporate and government leaders are relying on these models to do so. We clarify the strict independence of the USGS from the listing decision. We show that the allegations of failure to follow the principles of forecasting espoused by AGS are either incorrect or are based on misconceptions about the Arctic environment, polar bear biology, or statistical and mathematical methods. We conclude by showing that the AGS principles of forecasting are too ambiguous and subjective to be used as a reliable basis for auditing scientific investigations. In summary, we show that the AGS audit offers no valid criticism of the USGS conclusion that global warming poses a serious threat to the future welfare of polar bears and that it only serves to distract from reasoned public-policy debate.

Interfaces↗
USGS2006

Geologic and hydrogeologic framework of the Espa?ola basin -- Proceedings of the 5th annual Espa?ola basin workshop, Santa Fe, New Mexico, March 7-8, 2006

This report presents abstracts of technical studies that are focused on the hydrogeologic framework of the Espa?ola basin, a major subbasin of the Cenozoic Rio Grande rift. The Rio Grande, Rio Chama, Santa Fe River, and their tributaries carry important surface water in the Espa?ola basin. Sediments and interbedded volcanic rocks fill the Espa?ola basin and form extensive aquifer systems for ground water. Surface and ground water provide the principal sources of water for most residents of the basin, including people in the cities of Santa Fe, Espa?ola, and Los Alamos as well as Native Americans in several Pueblos. The abstracts describe results of technical studies that were presented either as poster exhibits or oral presentations at the fifth-annual Espa?ola basin workshop, held March 7-8 of 2006 in Santa Fe, New Mexico. The principal goal of this workshop was to share information about ongoing studies. The Espa?ola basin workshop was hosted by the Espa?ola basin technical advisory group (EBTAG) and sponsored by the U.S. Geological Survey, the New Mexico Bureau of Geology and Mineral Resources, and the Water Research Technical Assistance Office of Los Alamos National Laboratory. Abstracts in this report have been grouped into six information themes: Basic Water Data, Water Quality and Water Chemistry, Water Balance and Stream/Aquifer Interaction, Data Integration and Hydrologic Model Testing, Three-Dimensional Hydrogeological Architecture, and Geologic Framework. Abstracts submitted by U.S. Geological Survey authors in this report have had their technical content peer reviewed before they were included in the report. Technical reviews were not required for abstracts submitted by authors outside the USGS, although most did receive peer reviews within their originating agencies. Taken together, the abstracts in this report provide a view of the current status of hydrogeologic research within the Espa?ola basin.

Open-File Report↗
USGS2012

Olympic Fisher Reintroduction Project: Progress report 2008-2011

This progress report summarizes the final year of activities of Phase I of the Olympic fisher restoration project. The intent of the Olympic fisher reintroduction project is to reestablish a self-sustaining population of fishers on the Olympic Peninsula. To achieve this goal, the Olympic fisher reintroduction project released 90 fishers within Olympic National Park from 2008 to 2010. The reintroduction of fishers to the Olympic Peninsula was designed as an adaptive management project, including the monitoring of released fishers as a means to (1) evaluate reintroduction success, (2) investigate key biological and ecological traits of fishers, and (3) inform future reintroduction, monitoring, and research efforts. This report summarizes reintroduction activities and preliminary research and monitoring results completed through December 2011. The report is non-interpretational in nature. Although we report the status of movement, survival, and home range components of the research, we have not completed final analyses and interpretation of research results. Much of the data collected during the monitoring and research project will be analyzed and interpreted in the doctoral dissertation being developed by Jeff Lewis; the completion of this dissertation is anticipated prior to April 2013. We anticipate that this work, and analyses of other data collected during the project, will result in several peer-reviewed scientific publications in ecological and conservation journals, which collectively will comprise the final reporting of work summarized here. These publications will include papers addressing post-release movements, survival, resource selection, food habits, and age determination of fishers.

Report↗
USGS2004

A preliminary assessment of geologic framework and sediment thickness studies relevant to prospective US submission on extended continental shelf

Under the provisions of Articles 76 and 77 of the United Nations Convention on the Law of the Sea (UNCLOS), coastal States have sovereign rights over the continental shelf territory beyond 200-nautical mile (nm) from the baseline from which the territorial sea is measured if certain conditions are met regarding the geologic and physiographic character of the legal continental shelf as defined in those articles. These claims to an extended continental shelf must be supported by relevant bathymetric, geophysical and geological data according to guidelines established by the Commission on the Limits of the Continental Shelf (CLCS, 1999). In anticipation of the United States becoming party to UNCLOS, Congress in 2001 directed the Joint Hydrographic Center/Center for Coastal and Ocean Mapping at the University of New Hampshire to conduct a study to evaluate data relevant to establishing the outer limit of the juridical continental shelf beyond 200 nm and to recommend what additional data might be needed to substantiate such an outer limit (Mayer and others, 2002). The resulting report produced an impressive and sophisticated GIS database of data sources. Because of the short time allowed to complete the report, all seismic reflection data were classified together; the authors therefore recommended that USGS perform additional analysis on seismic and related data holdings. The results of this additional analysis are the substance of this report, including the status of geologic framework, sediment isopach research, and resource potential in the eight regions1 identified by Mayer and others (2002) where analysis of seismic data might be crucial for establishing an outer limit . Seismic reflection and refraction data are essential in determining sediment thickness, one of the criteria used in establishing the outer limits of the juridical continental shelf. Accordingly, the initial task has been to inventory public-domain seismic data sources, primarily those regionally extensive data held within the Department of the Interior (DOI). The numerous seismic reflection and refraction surveys collected prior to 1970 by academic and governmental institutions are generally not included in this compilation, except where they provide unique data in a region. These data sources were omitted from this report because they were deemed to be of insufficient quality (poorly navigated or low resolution) to meet the CLCS standards for a submission, or they were redundant with higher-quality, more modern data. Hence, this report attempts to identify those data sets of highest utility for establishing the outer limits of the juridical continental shelf. If there was any ambiguity or uncertainty about the relevance of a data set to a continental shelf submission, either by its quality, location, or other parameter, it was included in this compilation. This report does not summarize other geophysical data (such as marine magnetics or gravity) that might be relevant to understanding crustal provenance and geological continuity. Detailed metadata tables and maps are included to facilitate the location and utilization of these sources when a comprehensive assessment (?desktop study?) is undertaken.

Open-File Report↗
USGS1989

Habitat suitability criteria for assessment of instream flow needs of fish

In the western portion of the United States, competition for stream water gas often been fierce. Water resource management agencies in the southeastern United States, where water has been relatively abundant, are not being faced with similar competing demands for water, and with increasing pressures to develop and defend recommendations for protecting fish and invertebrates in streams. Streamflow depletion at any time can result in severe long-term effects on fish populations(Peters, 1982). The allocation of stream water to any numerous instream or offstream uses is tied to the issues of water quantity, quality, and timing, which center on two critical questions: (1)when and how much water of an acceptable quality should be left in a stream, and (2) what happens if flow regimes are changed? Answers to these questions will probably be complex, but reliable answers are needed to protect instream and offstream values. If instream flow interests expect to compete with offstream uses for limited water supplies, they must be able to determine reliable and defensible methods for determining instream flow needs and demonstrate the environmental consequences of altered flow regimes. My objectives in this paper are: (a) to present an overview of the need, development, and use of stream habitat suitability criteria, and the use of these criteria for the assessment of instream flow needs; (b) to give a status report on the plan of the National Ecology Research Center (NERC) for expansion of instream flow research in the Southeast; and (c) to discuss the relevancy of the research to river corridor management.

Book↗
USGS2005

Status and Trends of Biological Resources Program: Goals and Objectives 2004-2009

The mission of the Status and Trends of Biological Resources Program is to measure, predict, assess, and report the status and trends of the Nation's biological resources to facilitate research, enable resource management and stewardship, and promote public understanding and appreciation of our living resources.

General Information Product↗
USGS2009

Unconventional energy resources: 2007-2008 review

This paper summarizes five 2007–2008 resource commodity committee reports prepared by the Energy Minerals Division (EMD) of the American Association of Petroleum Geologists. Current United States and global research and development activities related to gas hydrates, gas shales, geothermal resources, oil sands, and uranium resources are included in this review. These commodity reports were written to advise EMD leadership and membership of the current status of research and development of unconventional energy resources. Unconventional energy resources are defined as those resources other than conventional oil and natural gas that typically occur in sandstone and carbonate rocks. Gas hydrate resources are potentially enormous; however, production technologies are still under development. Gas shale, geothermal, oil sand, and uranium resources are now increasing targets of exploration and development, and are rapidly becoming important energy resources that will continue to be developed in the future.

Natural Resources Research↗