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Quality Assurance Project Plan: Status and trends monitoring of small streams in the Puget Lowlands ecoregion for Stormwater Action Monitoring (SAM)

This Quality Assurance Project Plan (QAPP) details a long term status and trends monitoring study for small streams in the Puget Lowland as part of Stormwater Action Monitoring (SAM) program. SAM is the regional stormwater monitoring program funded by the Phase I Municipal Stormwater permit and the Western Washington Phase II Municipal Stormwater permit permittees. This study of small streams in the Puget Lowland Ecoregion (called Puget Small Streams, PSS study, or SAM_PSS study hereafter) is designed to answer the question, “Are regional conditions in receiving water quality and biota improving in concert with broad implementation of required stormwater management practices?” In 2015, the first round of monitoring evaluated the condition (status) of streams (DeGasperi et al., 2018). Beginning in 2020 and thereafter this study will monitor streams’ changes over time in urban, urbanizing and rural areas of the Puget Lowland. The PSS will follow the protocols developed for the on-going statewide stream health monitoring program-Status and Trends Monitoring for Watershed Health and Salmon Recovery (WHSR) for physical habitat, biological measurements, except for minor changes to water quality parameters to better capture the stormwater-related chemistry signals. In addition this effort will sample sieved sediments for stormwater-related chemistry signals. This QAPP ensures quality data collection, analysis, reporting and management of the SAM PSS monitoring study

Washington

Tampa Bay Ocean and Coastal Acidification Monitoring Quality Assurance Project Plan

Coastal acidification caused by eutrophication, freshwater inflow, and upwelling is already affecting many estuaries worldwide and can be exacerbated by ocean acidification that is caused by increasing carbon dioxide in the atmosphere. Effective management, mitigation, and (or) adaptation to the effects of coastal and ocean acidification require careful monitoring of the resulting changes in seawater chemistry. Local, regional, and national agencies and institutions organizing acidification-monitoring and research efforts work toward standardizing data collection and reporting protocols so that data can be shared and compared across regions and synthesized into national assessments. This document describes a Quality Assurance Project Plan for the collection and reporting of seawater chemical and physical data using standardized methods and published best practices relevant for monitoring coastal and ocean acidification. The plan specifically addresses procedures for a joint partnership, the Tampa Bay Ocean and Coastal Acidification Monitoring project, conducted by the U.S. Geological Survey, the U.S. Environmental Protection Agency, and the Tampa Bay Estuary Program in the Tampa Bay estuary, Florida. The plan describes recommended procedures for project organization, sampling process design and methods, data-quality objectives and criteria, data validation and management procedures, and project deliverables.

Florida

Research Implementation and Quality Assurance Project Plan: An Evaluation of Hyperspectral Remote Sensing Technologies for the Detection of Fugitive Contamination at Selected Superfund Hazardous Waste Sites

This project is a research collaboration between the U.S. Environmental Protection Agency (EPA) Office of Inspector General (OIG) and the U.S. Geological Survey (USGS) Eastern Geographic Science Center (EGSC), for the purpose of evaluating the utility of hyperspectral remote sensing technology for post-closure monitoring of residual contamination at delisted and closed hazardous waste sites as defined under the Comprehensive Environmental Response Compensation and Liability Act [CERCLA (also known as 'Superfund')] of 1980 and the Superfund Amendments and Reauthorization Act (SARA) of 1986.

Open-File Report

Evaluation of the Washington State Department of Transportation stormwater monitoring and effectiveness program for 2014–19

The U.S. Geological Survey was asked by the Washington State Department of Transportation to provide technical assistance as a third-party reviewer of their stormwater effectiveness monitoring program during the transition between the completion of the 2014 Washington State Department of Ecology permit requirements and start of the new 2019 Washington State Department of Ecology permit requirements. For the purposes of this evaluation, the U.S. Geological Survey reviewed Washington State Department of Transportation’s 2014 National Pollution Discharge Elimination System permit. This review focuses on sections S7, S8, G9, and appendix 4 of the permit that are specific to monitoring. These sections cover the methods of monitoring, the constituents that were monitored, laboratory requirements, reporting requirements, and data archival. Next, all quality-assurance project plans for the 2014 general permit and annual reports required for the permit were reviewed. The quality-assurance project plans and annual reports were reviewed to ensure that monitoring was executed and reported as required by the 2014 general permit. The monitoring requirements put forth from the permits were fully addressed in quality-assurance project plans and were completed and presented in the annual monitoring reports. Overall, the Washington State Department of Transportation monitoring program does not change much under its new 2019 permit. The Washington State Department of Transportation has followed through with the plan set out in each of its approved quality-assurance project plans and therefore, is in a good position to meet or exceed the new permit requirements in the upcoming 5-year permit cycle.

Open-File Report

Guidelines for the collection of continuous stream water-temperature data in Alaska

Objectives of stream monitoring programs differ considerably among many of the academic, Federal, state, tribal, and non-profit organizations in the state of Alaska. Broad inclusion of stream-temperature monitoring can provide an opportunity for collaboration in the development of a statewide stream-temperature database. Statewide and regional coordination could reduce overall monitoring cost, while providing better analyses at multiple spatial and temporal scales to improve resource decision-making. Increased adoption of standardized protocols and data-quality standards may allow for validation of historical modeling efforts with better projection calibration. For records of stream water temperature to be generally consistent, unbiased, and reproducible, data must be collected and analyzed according to documented protocols. Collection of water-temperature data requires definition of data-quality objectives, good site selection, proper selection of instrumentation, proper installation of sensors, periodic site visits to maintain sensors and download data, pre- and post-deployment verification against an NIST-certified thermometer, potential data corrections, and proper documentation, review, and approval. A study created to develop a quality-assurance project plan, data-quality objectives, and a database management plan that includes procedures for data archiving and dissemination could provide a means to standardize a statewide stream-temperature database in Alaska. Protocols can be modified depending on desired accuracy or specific needs of data collected. This document is intended to guide users in collecting time series water-temperature data in Alaskan streams and draws extensively on the broader protocols already published by the U.S. Geological Survey.

Alaska

Integrating quality assurance in project work plans of the U.S. Geological Survey

The U.S. Geological Survey's objectives for including quality assurance procedures in a project work plan are to ensure that the quality of the data collected is defined and is appropriate for the objectives of the investigation. The data- quality information can be used in the interpre- tation of the data. A project work plan that includes quality assessment provides definable benefits such as clarity of expectations, a method for obtaining a set of data that is expected and has been proven valid, a documentation trail, products that are produced on time and that meet project objectives, and a decrease in work that is lost or redone. Project chiefs must prepare and can publish the work plan for scientific investigations. An expanded outline of a framework that can be used to prepare a project work plan that includes quality assurance is described in this report and contains the following topics: data-quality objectives; project organization and responsibilities; data collection; data processing; project reviews; data analysis; remedial actions; project progress reports and quality assurance reports to management.

Open-File Report

Puget Sound Spatially Referenced Regression on Watershed Attributes (SPARROW)

The United States Geological Survey (USGS) and the Washington State Department of Ecology (Ecology) are collaborating on the development of refined, seasonal load estimates of total nitrogen and total phosphorus within watersheds draining to Washington waters of the Salish Sea for the period 2005-2020. The modeling approach for this work is based on SPARROW (Spatially Referenced Regression on Watershed Attributes), a watershed modeling technique developed by the USGS. SPARROW is typically used to estimate stream loads throughout a stream network. The estimated loads will be used within the context of the Puget Sound Nutrient Source Reduction Project to evaluate the influence of watershed contributions of nutrients throughout the stream network and to marine waters. This quality assurance project plan (QAPP) contains details about the technical approach, observational data, spatial and temporal source data, limitations, and quality assurance procedures that will be employed to develop the SPARROW models so that they can be used to inform additional actions to address excess nutrients.

Washington

Geospatial standard operating procedures of the Chesapeake Bay Program

Introduction The Chesapeake Bay Program (CBP) has operated a geographic information system (GIS) program since the early 1990s to address the established and growing need for and use of geospatial data, maps, and analysis within the CBP Partnership. This report is intended to detail the standard operating procedures of the CBP GIS program and address the quality assurance, quality control, and other technical activities that CBP will implement to ensure the commitment of the CBP GIS Team to performance standards (U.S. Environmental Protection Agency, 2003). The report is intended as an update to the 2011 Quality Assurance Project Plan (QAPP). For specialized tasks or analytical projects beyond the scope of this QAPP, a separate specialized QAPP with details on quality control, assurance procedures, and the geospatial methods associated with all aspects of the project may be required.

Open-File Report

Collection and analysis of high-resolution elevation data for the Lincoln Lidar Project, Lincoln, Nebraska, 2004

The Lincoln Lidar Project was a partnership developed between the U.S. Geological Survey National Center for Earth Resources Observations and Science (EROS), Lancaster County and the city of Lincoln, Nebraska. This project demonstrated a successful planning, collection, analysis and integration of high-resolution elevation information using Light Detection and Ranging, (Lidar) data. This report describes the partnership developed to collect local Lidar data and transform the data into information useable at local to national levels. This report specifically describes project planning, quality assurance, processing, transforming raw Lidar points to useable data layers, and visualizing and disseminating the raw and final products.

Nebraska

Detection of environmental DNA of bigheaded carps in samples collected from selected locations in the St. Croix River and in the Mississippi River

The use of molecular methods, such as the detection of environmental deoxyribonucleic acid (eDNA), have become an increasingly popular tool in surveillance programs that monitor for the presence of invasive species in aquatic systems. One early application of these methods in aquatic systems was surveillance for DNA of Asian carps (specifically bighead carp Hypophthalmichthys nobilis and silver carp H. molitrix) in water samples taken from the Chicago Area Waterway System. The ability to identify DNA of a species in an environmental sample presents a potentially powerful tool because these sensitive analyses can presumably detect the presence of DNA in water even when the species is not abundant or are difficult to catch or monitor with traditional gear. Prior to research presented in this report, an initial eDNA surveillance effort was completed in selected locations in the Upper Mississippi and St. Croix Rivers in 2011 after the capture of a bighead carp in the St. Croix River near Prescott, WI. Data presented in this report were developed to duplicate the 2011 monitoring results from the Upper Mississippi and St. Croix Rivers and to provide critical insight into the technique to inform future work in these locations. We specifically sought to understand the potential confounding effects of other pathways of eDNA movement (e.g., fish-eating birds, watercraft) on the variation in background DNA by collecting water samples from (1) sites within the St. Croix River and the upper Mississippi River where the DNA of silver carp was previously detected, (2) sites considered to be free of Asian carp, and (3) a site known to have a large population of Asian carp. We also sought to establish a baseline Asian carp eDNA signature to which future eDNA sampling efforts could be compared. All samples taken as part of this effort were processed using conventional polymerase chain reaction (PCR) according to procedures outlined in the U.S. Army Corps of Engineers Quality Assurance Project Plan with minor deviations designed to enhance the rigor of our data. Presence of DNA in PCR-positive samples was confirmed by Sanger sequencing (forward and reverse) and sequences were considered positive only if sequences (forward and reverse) of ≥150 base pairs had a match of ≥95% to those of published sequences for bighead carp or silver carp. The DNA of bighead carp and silver carp was not detected in environmental samples collected above and below St. Croix Falls Dam on the St. Croix River, above and below the Coon Rapids Dam and below Lock and Dam 1 on the Upper Mississippi River, and from two negative control lakes, Square Lake and Lake Riley. The DNA of silver carp was detected in environmental samples collected below Lock and Dam 19 at Keokuk, Iowa, a reach of the river with high silver carp abundance. The portion (68%) of environmental samples taken below Lock and Dam 19 that were determined to contain the DNA of silver carp was similar to that reported in the scientific literature for other abundant species. The DNA of bighead carp, however, was not detected in environmental samples collected below Lock and Dam 19, a reach of the river known to have bighead carp. Previous reported detections of the DNA of silver carp in samples collected in 2011 were not replicated in this study. Additional analyses are planned for the DNA extracted from the samples collected in 2012. Those analyses may provide additional information regarding the lack of amplification of bighead carp DNA and the lengths of the sequences of silver carp DNA present in samples taken below Lock and Dam 19. These additional analyses may help inform the use of eDNA monitoring in large, complex systems like the Mississippi River.

Minnesota, Wisconsin

Preliminary geologic framework developed for a proposed environmental monitoring study of a deep, unconventional Marcellus Shale drill site, Washington County, Pennsylvania

Background In the fall of 2011, the U.S. Geological Survey (USGS) was afforded an opportunity to participate in an environmental monitoring study of the potential impacts of a deep, unconventional Marcellus Shale hydraulic fracturing site. The drill site of the prospective case study is the “Range Resources MCC Partners L.P. Units 1-5H” location (also referred to as the “RR–MCC” drill site), located in Washington County, southwestern Pennsylvania. Specifically, the USGS was approached to provide a geologic framework that would (1) provide geologic parameters for the proposed area of a localized groundwater circulation model, and (2) provide potential information for the siting of both shallow and deep groundwater monitoring wells located near the drill pad and the deviated drill legs. The lead organization of the prospective case study of the RR–MCC drill site was the Groundwater and Ecosystems Restoration Division (GWERD) of the U.S. Environmental Protection Agency. Aside from the USGS, additional partners/participants were to include the Department of Energy, the Pennsylvania Geological Survey, the Pennsylvania Department of Environmental Protection, and the developer Range Resources LLC. During the initial cooperative phase, GWERD, with input from the participating agencies, drafted a Quality Assurance Project Plan (QAPP) that proposed much of the objectives, tasks, sampling and analytical procedures, and documentation of results. Later in 2012, the proposed cooperative agreement between the aforementioned partners and the associated land owners for a monitoring program at the drill site was not executed. Therefore, the prospective case study of the RR–MCC site was terminated and no installation of groundwater monitoring wells nor the collection of nearby soil, stream sediment, and surface-water samples were made. Prior to the completion of the QAPP and termination of the perspective case study the geologic framework was rapidly conducted and nearly completed. This was done for three principal reasons. First, there was an immediate need to know the distribution of the relatively undisturbed surface to near-surface bedrock geology and unconsolidated materials for the collection of baseline surface data prior to drill site development (drill pad access road, drill pad leveling) and later during monitoring associated with well drilling, well development, and well production. Second, it was necessary to know the bedrock geology to support the siting of: (1) multiple shallow groundwater monitoring wells (possibly as many as four) surrounding and located immediately adjacent to the drill pad, and (2) deep groundwater monitoring wells (possibly two) located at distance from the drill pad with one possibly being sited along one of the deviated production drill legs. Lastly, the framework geology would provide the lateral extent, thickness, lithology, and expected discontinuities of geologic units (to be parsed or grouped as hydrostratigraphic units) and regional structure trends as inputs into the groundwater model. This report provides the methodology of geologic data accumulation and aggregation, and its integration into a geographic information system (GIS) based program. The GIS program will allow multiple data to be exported in various formats (shapefiles [.shp], database files [.dbf], and Keyhole Markup Language files [.KML]) for use in surface and subsurface geologic site characterization, for sampling strategies, and for inputs for groundwater modeling.

Pennsylvania

Effects of 6PPD, 6PPD-quinone, and potential alternatives on freshwater mussels.

N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine (6PPD) is an antioxidant and antiozonant widely used in tires. When 6PPD reacts with ozone, it transforms into a breakdown product called 6PPD-quinone (6PPDQ). Both compounds are currently being studied because of their high aquatic toxicity to fish, particularly coho salmon ( Oncorhynchus kisutch ). The Washington State Legislature directed Ecology to perform an Alternatives Assessment on 6PPD in motor vehicle tires. The goal is to identify and evaluate potential replacement compounds for these products. As part of this work, Ecology is studying how potential alternatives interact with species of concern and compare those effects with what is already known about 6PPD and 6PPDQ. One of those species of concern is freshwater mussels. Freshwater mussels are an imperiled group of organisms with high cultural and ecological significance. However, there are major data gaps concerning how 6PPD affects aquatic species other than salmonids. Mussels are of particular concern due to their unique parasitic life cycle where a fish host is required to fully develop into a juvenile. If their fish host is sensitive to 6PPD, mussel populations could also be at risk. This project aims to determine lethal and sublethal toxicity of 6PPD, 6PPDQ, and any potential alternatives to freshwater mussels. This objective will be accomplished by conducting acute toxicity tests with the compounds to determine median lethal concentrations (LC 50 s) of the tested compounds to freshwater mussels. Sublethal toxicity will be studied by then determining if the presence of 6PPD, 6PPDQ, and potential alternatives impacts the mussel’s ability to use a fish host for the important parasitic stage of its life cycle.

Washington

Preparations for water sampling

The “National Field Manual for the Collection of Water-Quality Data” (NFM) provides guidelines and procedures for U.S. Geological Survey (USGS) personnel who collect data used to assess the quality of the Nation’s surface-water and groundwater resources. This chapter, NFM A1, provides an overview of preparations for water sampling, which includes site reconnaissance, project work plans, quality-assurance plans, basic equipment and supplies needed for fieldwork, safety precautions, and planning for data management. It updates and supersedes USGS Techniques of Water-Resources Investigations, book 9, chapter A1, version 2.0, by F.D. Wilde. Before 2017, the NFM chapters were released in the USGS Techniques of Water-Resources Investigations series. Effective in 2018, new and revised NFM chapters are being released in the USGS Techniques and Methods series; this series change does not affect the content and format of the NFM. More information is in the general introduction to the NFM (USGS Techniques and Methods, book 9, chapter A0) at https://doi.org/10.3133/tm9A0 . The authoritative current versions of NFM chapters are available in the USGS Publications Warehouse at https://pubs.er.usgs.gov/ . Comments, questions, and suggestions related to the NFM can be addressed to nfm-owq@usgs.gov .

Techniques and Methods

Quality-assurance plan for water-resources activities of the U.S. Geological Survey in Idaho

To ensure continued confidence in its products, the Water Resources Division of the U.S. Geological Survey implemented a policy that all its scientific work be performed in accordance with a centrally managed quality-assurance program. This report establishes and documents a formal policy for current (1995) quality assurance within the Idaho District of the U.S. Geological Survey. Quality assurance is formalized by describing district organization and operational responsibilities, documenting the district quality-assurance policies, and describing district functions. The districts conducts its work through offices in Boise, Idaho Falls, Twin Falls, Sandpoint, and at the Idaho National Engineering Laboratory. Data-collection programs and interpretive studies are conducted by two operating units, and operational and technical assistance is provided by three support units: (1) Administrative Services advisors provide guidance on various personnel issues and budget functions, (2) computer and reports advisors provide guidance in their fields, and (3) discipline specialists provide technical advice and assistance to the district and to chiefs of various projects. The district's quality-assurance plan is based on an overall policy that provides a framework for defining the precision and accuracy of collected data. The plan is supported by a series of quality-assurance policy statements that describe responsibilities for specific operations in the district's program. The operations are program planning; project planning; project implementation; review and remediation; data collection; equipment calibration and maintenance; data processing and storage; data analysis, synthesis, and interpretation; report preparation and processing; and training. Activities of the district are systematically conducted under a hierarchy of supervision an management that is designed to ensure conformance with Water Resources Division goals quality assurance. The district quality-assurance plan does not describe detailed technical activities that are commonly termed "quality-control procedures." Instead, it focuses on current policies, operations, and responsibilities that are implemented at the management level. Contents of the plan will be reviewed annually and updated as programs and operations change.

Idaho

Field methods, quality-assurance, and data management plan for water-quality activities and water-level measurements, Idaho National Laboratory, Idaho

Introduction Water-quality activities and water-level measurements conducted by the U.S. Geological Survey (USGS) Idaho National Laboratory (INL) Project Office coincide with the USGS mission of evaluating the quantity and quality of the Nation’s water resources. The activities are conducted in cooperation with the U.S. Department of Energy’s (DOE) Idaho Operations Office. Results of water-quality and hydraulic head research efforts are presented in various USGS and scientific journal publications (refer to Fisher, 2022). These data are stored internally in the Aquarius Time Series and Aquarius Samples databases and are publicly accessible through National Water Quality Monitoring Council (2025) and U.S. Geological Survey (2025). Data collected from our studies are used by researchers, Federal and State agencies, water management and regulatory organizations, as well as the public. This quality assurance plan (QAP) describes the methods and processes for field methods, data collection, data management, data auditing, and equipment management for both the water-quality and water-level programs at the USGS INL Project Office (hereto referred to as INL Project Office). A comprehensive quality assurance (QA) plan ensures that the processes defined in this document will guide the program staff to collect and publish reliable, useful, and defensible data products for stakeholders. This QAP supersedes previous versions of this document and is intended to complement the Quality Assurance and Data Management (QADM) Plan for the Idaho Water Science Center (IDWSC; Christopher Mebane and Lauren Zinsser, written commun., 2024).

Idaho

Surface-water-quality assessment of the upper Illinois River basin in Illinois, Indiana, and Wisconsin; project description

In 1986, the U.S. Geological Survey began a National Water-Quality Assessment program to (1) provide nationally consistent descriptions of the current status of water quality for a large, diverse, and geographically distributed part of the Nation's surface- and ground-water resources; (2) define, where possible, trends in water quality; and (3) identify and describe the relations of both status and trends in water quality to natural factors and the history of land use and land- and waste-management activities. The program is presently in a pilot phase that will test and modify, as necessary, concepts and approaches in preparation for possible full implementation of the program in the future. The upper Illinois River basin is one of four basins selected to test the concepts and approaches of the surface-water-quality element of the national program. The basin drains 10,949 square miles of Illinois, Indiana, and Wisconsin. Three principal tributaries are the Kankakee and Des Plaines Rivers that join to form the Illinois River and the Fox River. Land use is predominantly agricultural; about 75 percent of the basin is cultivated primarily for production of corn and soybeans. About 13 percent of the basin is urban area, most of which is located in the Chicago metropolitan area. The population of the basin is about 7 million. About 6 million people live in the Des Plaines River basin. Many water-quality issues in the upper Illinois River basin are related to sediment, nutrients, potentially toxic inorganic and organic constituents, and to water-management practices. Occurrence of sediment and the chemical constituents in the rivers and lakes within the basin has the potential to adversely affect the water's suitability for aquatic life, recreation, or, through the consumption of fish, human health. The upper Illinois River basin project consists of five major activities. The first activity--analysis of existing information and preparation of a report that describes recent water-quality conditions and trends--is currently underway. The second activity--fixed-station water-quality sampling at eight stations--began in April 1987 and will last at least 3 years. Water-quality data collected at these stations will be used to determine the frequency of occurrence of constituent concentrations, their annual and seasonal loads, and time trends in concentrations for a selected number of constituents. The third activity will be synoptic water-quality studies. Each study will involve sampling many sites at specific flow conditions and for selected water-quality constituents. Information gained from these studies will supplement informa tion gained from fixed-station sampling. A synoptic study of streambed sediments is tentatively planned for the summer of 1987 to describe the occurrence and distribution of trace elements in the basin. The fourth activity will consist of one or more topical subbasin or river-reach studies. The purpose of such studies is to better define certain water-quality conditions in specific areas and gain an understanding of the processes affecting the observed conditions. The fifth activity is the preparation of reports that will describe results from each of the first four activities. Quality assurance and coordination are being provided at both the national and pilot-project levels. A technical quality-assurance plan that addresses all aspects of sample collection, analysis, and reporting is being prepared at the national level. This plan will be appended as needed at the pilot-project level. A National Coordinating Work Group that functions under the auspices of the Interagency Advisory Committee on Water Data and the Advisory Committee on Water Data for Public Use has been established at the national level. A local liaison committee consisting of representatives from Federal, State, and local agencies has been established to enhance communication and to ensure that the scientific information produced by the

Open-File Report