Plant ecology of an arid basin, Tres Alamos-Redington area, southeastern Arizona
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Professional Paper↗
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Plant ecology of Death Valley, California, with a section on distribution of fungi and algae
No abstract available.
California↗
Towards a predictive framework for biocrust mediation of plant performance: A meta‐analysis
Understanding the importance of biotic interactions in driving the distribution and abundance of species is a central goal of plant ecology. Early vascular plants likely colonized land occupied by biocrusts — photoautotrophic, surface‐dwelling soil communities comprised of cyanobacteria, bryophytes, lichens and fungi — suggesting biotic interactions between biocrusts and plants have been at play for some 2,000 million years. Today, biocrusts coexist with plants in dryland ecosystems worldwide, and have been shown to both facilitate or inhibit plant species performance depending on ecological context. Yet, the factors that drive the direction and magnitude of these effects remain largely unknown. We conducted a meta‐analysis of plant responses to biocrusts using a global dataset encompassing 1,004 studies from six continents. Meta‐analysis revealed there is no simple positive or negative effect of biocrusts on plants. Rather, plant responses differ by biocrust composition and plant species traits and vary across plant ontogeny. Moss‐dominated biocrusts facilitated, while lichen‐dominated biocrusts inhibited overall plant performance. Plant responses also varied among plant functional groups: C 4 grasses received greater benefits from biocrusts compared to C 3 grasses, and plants without N‐fixing symbionts responded more positively to biocrusts than plants with N‐fixing symbionts. Biocrusts decreased germination but facilitated growth of non‐native plant species. Synthesis . Results suggest that interspecific variation in plant responses to biocrusts, contingent on biocrust type, plant traits, and ontogeny can have strong impacts on plant species performance. These findings have important implications for understanding biocrust contributions to plant productivity and community assembly processes in ecosystems worldwide.
Journal of Ecology↗
Perspectives on the scientific legacy of J. Philip Grime
Perhaps as much as any other scientist in the 20th century, J.P. Grime transformed the study of plant ecology and helped shepherd the field toward international prominence as a nexus of ideas related to global environmental change. Editors at the Journal of Ecology asked a group of senior plant ecologists to comment on Grime's scientific legacy. This commentary piece includes individual responses of 14 scientists from around the world attesting to Grime's foundational role in plant functional ecology, including his knack for sparking controversy, his unique approach to theory formulation involving clever experiments and standardized trait measurements of large numbers of species, and the continued impact of his work on ecological science and policy.
Journal of Ecology↗
Climate and soil texture influence patterns of forb species richness and composition in big sagebrush plant communities across their spatial extent in the western US
Article for outlet: Plant Ecology. Abstract: Big sagebrush (Artemisia tridentata Nutt.) plant communities are widespread non-forested drylands in western North American and similar to all shrub steppe ecosystems world-wide are composed of a shrub overstory layer and a forb and graminoid understory layer. Forbs account for the majority of plant species diversity in big sagebrush plant communities and are important for ecosystem function. Few studies have explored the geographic patterns of forb species richness and composition and their relationships with environmental variables in these communities. Our objectives were to examine the small and large-scale spatial patterns in forb species richness and composition and the influence of environmental variables. We sampled forb species richness and composition along transects at 15 field sites in Colorado, Idaho, Montana, Nevada, Oregon, Utah, and Wyoming, built species-area relationships to quantify differences in forb species richness at sites, and used Principal Components Analysis and nonmetric multidimensional scaling to identify relationships among environmental variables and forb species richness and composition. We found that species richness was most strongly correlated with soil texture, while species composition was most related to climate. The combination of climate and soil texture influences water availability, with important consequences for forb species richness and composition, which suggests climate-change induced modification of soil water availability may have important implications for plant species diversity in the future. Our paper is the first to our knowledge to examine forb biodiversity patterns in big sagebrush ecosystems in relation to environmental factors across the big sagebrush region.
Colorado, Idaho, Montana, Nevada, Oregon, Utah, Wy↗
Do nurse plant effects strengthen over time? Results from 12 years of desert habitat restoration
Nurse plant effects occur when benefactor perennials facilitate beneficiary plants below their canopies. Two poorly understood aspects of nurse plant ecology include whether facilitation strengthens as nurse plants mature and whether reestablishing perennials through ecological restoration at disturbed sites can trigger facilitation akin to in natural plant communities. We examined these uncertainties in a 12-year study by assessing plant communities below native perennials outplanted at disturbed sites and as compared with open interspaces and perennials in undisturbed sites in Joshua Tree National Park, Mojave Desert, USA. An overarching conclusion was that facilitation by outplants was intermittent. Results did not consistently support a hypothesis that facilitation strengthened as outplants matured, as the nuanced results hinged on beneficiary response metrics (cover or species richness), group of potential beneficiary species (e.g., native, non-native), and measurement year. There was, however, a general trend for beneficiary plant groups below outplants to shift through time. Non-native plant cover initially benefited when outplants were 1–9 years old, but this switched to native plants benefiting as outplants matured (9–12 years old). Facilitation was not strongest in dry years nor was nurse canopy cover usually strongly correlated with beneficiary metrics. An encouraging result for ecological restoration was that reestablishing native perennials appeared to disproportionately facilitate other native over non-native plants as restoration sites matured.
California↗
Invasive plants and their ecological strategies: Prediction and explanation of woody plant invasion in New England
Effective management of introduced species requires the early identification of species that pose a significant threat of becoming invasive. To better understand the invasive ecology of species in New England, USA, we compiled a character data set with which to compare non-native species that are known invaders to non-native species that are not currently known to be invasive. In contrast to previous biological trait-based models, we employed a Bayesian hierarchical analysis to identify sets of plant traits associated with invasiveness for each of three growth forms (vines, shrubs, and trees). The resulting models identify a suite of 'invasive traits' highlighting the ecology associated with invasiveness for each of three growth forms. The most effective predictors of invasiveness that emerged from our model were 'invasive elsewhere', 'fast growth rate', 'native latitudinal range', and 'growth form'. The contrast among growth forms was pronounced. For example, 'wind dispersal' was positively correlated with invasiveness in trees, but negatively correlated in shrubs and vines. The predictive model was able to correctly classify invasive plants 67% of the time (22/33), and non-invasive plants 95% of the time (204/215). A number of potential future invasive species in New England that deserve management consideration were identified. ?? 2007 The Authors.
Diversity and Distributions↗
Dispersion of copper from the San Manuel copper deposit, Pinal County, Arizona
At San Manuel, near Tucson, Arizona, recent churn drilling has blocked out large reserves of low-grade "porphyry copper" ore. This virgin deposit has a small outcrop and seems ideally suited for a geochemical study of the dispersion pattern produced by weathering in a desert climate. Samples of soils, alluvium, ground water, and vegetation were analyzed for copper. To avoid grinding, to accentuate differences in copper concentration, and to decrease sampling error, sampling was confined to the silt and clay fraction of the soil and alluvium. A sensitive field test for copper, using hydrochloric acid for a digestant and dithizone for copper determination, proved both quick and reliable. The results of the study show that at present little copper from the ore body dissolves in the ground water or runoff, and also that very little is taken up by plants growing on the ore outcrop. For this reason, prospecting for similar deposits by the sampling and analysis of ground water or vegetation is unlikely to be fruitful. A study of plant ecology, however, shows that certain plant species grow preferentially on outcrops of copper ore and may be useful as indicators of ore. Chrysocolla along joints carries most of the copper in the oxidized zone. The chrysocolla is slowly disintegrated mechanically as the rock weathers and enters the fine fraction of the soil. Slope wash and soil creep carry the copper along with the other soil materials into the nearby washes, where they are incorporated in the alluvium and swept downstream during floods. Abrasion probably continues to concentrate the copper in the fines, but the net change downstream is a decrease in copper content caused by dilution. As copper can now be readily determined by chemical analysis in the field, analysis of soil and alluvium seems to be one of the best geochemical methods of prospecting for copper in a desert environment. Wherever appreciable copper is found in alluvium or soils, upstream or upslope sampling can be used to trace the copper back to its source.
Arizona↗
Wildfire and invasive species in the west: challenges that hinder current and future management and protection of the sagebrush-steppe ecosystem: a Gap Report
The Western Association of Fish and Wildlife Agencies (WAFWA) to satisfy the 45-day report requirement identified in Cooperative Agreement (F13AC00353) between WAFWA and the U. S. Fish and Wildlife Service (FWS) submit this “Gap Report”. This report summarizes the policy, fiscal and science challenges that land managers encounter related to the control and reduction of the invasive plant/fire complex, especially as it relates to the threaten or endangered species listing status of the Greater sage-grouse ( Centrocercus urophasianus ). While this Gap Report identifies 22 technical, policy, planning and funding gaps, it should be considered a “work in-progress”. To address this effort a Wildfire/Invasive Initiative Work Group (WG) was formed. The WG consist of nationally recognized experts in fire ecology, Sage-grouse ecology and management, range management and plant ecology. The WG developed this Gap Report and will be developing the final report for this Cooperative Agreement. Thus, as the WG evaluates the wildfire/invasive issue and makes recommendation to address scientific and management shortcomings, additional gaps will be identified and included in the final report. Within this report, the WG has suggested the top 5 gaps. However, the actual priority of what should be addressed first will depend on the significance and sequence of the limiting factor, available funding, current work, roles and responsibilities of the specific agencies, etc. The WG will continue to meet on a regular basis to further develop and expand this list of gaps. Additionally, the WG will offer specific options to address the identified gaps. However, the WG recommends that the FWS, possibly through the State/Federal (Western Governors Association) Sage Grouse Task Force or the National Sage-grouse Executive Oversight Committee, establish a Subcommittee to specifically review this Gap Report and develop a multi-agency approach on how to address each gap. The WG will continue to endeavor to establish a priority list and identify the “low hanging fruit” that can be addressed in the short-term to affect the listing decision. Additionally, the WG will propose a longer-term strategy. However, to successfully establish such a strategy it will take buy-in and commitment at the highest levels in federal and state governments. In an effort to provide managers an opportunity to address the most important issues this coming fiscal year, we offer the following top 5 gaps. Beyond these top 5, the WG has identified 17 additional gaps that should be evaluated by both federal and state agencies as a means to help better manage the wildfire/invasive threat in the west.
Report↗
From bacteria to elephants: Effects of land-use legacies on biodiversity and ecosystem structure in the Serengeti-Mara ecosystem: Chapter 8
Generally, ecological research has considered the aboveground and belowground components of ecosystems separately. Consequently, frameworks for integrating the two components are not well developed. Integrating the microbial components into ecosystem ecology requires different approaches from those offered by plant ecology, partly because of the scales at which microbial processes operate and partly because of measurement constraints. Studies have begun to relate microbial community structure to ecosystem function. results suggest that excluding people and livestock from the MMNR, or preventing heavier livestock from grazing around settlements, may not change the general structure of the ecosystem (soils, plant structure), but can change the numbers and diversity of wildlife, nematodes and microbes in this ecosystem in subtle ways.
Book chapter↗
Scalability and performance tradeoffs in quantifying relationships between elevation and tidal wetland plant communities
Elevation is a major driver of plant ecology and sediment dynamics in tidal wetlands, so accurate and precise spatial data are essential for assessing wetland vulnerability to sea-level rise and making forecasts. We performed survey-grade elevation and vegetation surveys of the Global Change Research Wetland, a brackish microtidal wetland in the Chesapeake Bay estuary, Maryland (USA), to both intercompare unbiased digital elevation model (DEM) creation techniques and to describe niche partitioning of several common tidal wetland plant species. We identified a tradeoff between scalability and performance in creating unbiased DEMs, with more data-intensive methods such as kriging performing better than 3 more scalable methods involving post-processing of light detection and ranging (LiDAR)-based DEMs. The LiDAR Elevation Correction with Normalized Difference Vegetation Index (LEAN) method provided a compromise between scalability and performance, although it underpredicted variability in elevation. In areas where native plants dominated, the sedge Schoenoplectus americanus occupied more frequently flooded areas (median: 0.22, 95% range: 0.09 to 0.31 m relative to North America Vertical Datum of 1988 [NAVD88]) and the grass Spartina patens , less frequently flooded (0.27, 0.1 to 0.35 m NAVD88). Non-native Phragmites australis dominated at lower elevations more than the native graminoids, but had a wide flooding tolerance, encompassing both their ranges (0.19, -0.05 to 0.36 m NAVD88). The native shrub Iva frutescens also dominated at lower elevations (0.20, 0.04 to 0.30 m NAVD88), despite being previously described as a high marsh species. These analyses not only provide valuable context for the temporally rich but spatially restricted data collected at a single well-studied site, but also provide broad insight into mapping techniques and species zonation.
Maryland↗
Biodiversity and ecosystem functioning: Synthesis and perspectives
Does diversity matter in restored communities? This edited book explores the diversity–function debate, which has raged in ecology during the past several decades. The diversity–function question is relevant in restoration, but the question has not yet received a straightforward hearing in the field of restoration science. None of the authors of this book explicitly relate their ideas to restoration, but the book can educate restorationists about the most recent developments in the diversity–function debate. It is also an excellent book for students to learn about the recent developments and historical background of the diversity–function debate and can be used for graduate-level seminars in restoration or plant ecology.
Restoration Ecology↗
Temperature mediates secondary dormancy in resting cysts of Pyrodinium bahamense (Dinophyceae)
High‐biomass blooms of the toxic dinoflagellate Pyrodinium bahamense occur most summers in Tampa Bay, Florida, USA, posing a recurring threat to ecosystem health. Like many dinoflagellates, P. bahamense forms immobile resting cysts that can be deposited on the seafloor—creating a seed bank that can retain the organism within the ecosystem and initiate future blooms when cysts germinate. In this study, we examined changes in the dormancy status of cysts collected from Tampa Bay and applied lessons from plant ecology to explore dormancy controls. Pyrodinium bahamense cysts incubated immediately after field collection displayed a seasonal pattern in dormancy and germination that matched the pattern of cell abundance in the water column. Newly deposited (surface) cysts and older (buried) cysts exhibited similar germination patterns, suggesting that a common mechanism regulates dormancy expression in new and mature cysts. Extended cool‐ and warm‐temperature conditioning of field‐collected cysts altered the cycle of dormancy compared with that of cysts in nature, with the duration of cool temperature exposure being the best predictor of when cysts emerged from dormancy. Extended warm conditioning, on the other hand, elicited a return to dormancy, or secondary dormancy, in nondormant cysts. These results directly demonstrate environmental induction of secondary dormancy in dinoflagellates—a mechanism common and thoroughly documented in higher plants with seasonal growth cycles. Our findings support the hypothesis that a seasonal cycle in cyst germination drives P. bahamense bloom periodicity in Tampa Bay and point to environmentally induced secondary dormancy as an important regulatory factor of that cycle.
Florida↗
Landscape characteristics of Rhizophora mangle forests and propagule deposition in coastal environments of Florida (USA)
Field dispersal studies are seldom conducted at regional scales even though reliable information on mid-range dispersal distance is essential for models of colonization. The purpose of this study was to examine the potential distance of dispersal of Rhizophora mangle propagules by comparing deposition density with landscape characteristics of mangrove forests. Propagule density was estimated at various distances to mangrove sources (R. mangle) on beaches in southwestern Florida in both high-and low-energy environments, either facing open gulf waters vs. sheltered, respectively. Remote sensing and Geographic Information Systems were used to identify source forests and to determine their landscape characteristics (forest size and distance to deposition area) for the regression analyses. Our results indicated that increasing density of propagules stranded on beaches was related negatively to the distance of the deposition sites from the nearest stands of R. mangle and that deposition was greatly diminished 2 km or more from the source. Measures of fragmentation such as the area of the R. mangle forests were related to propagule deposition but only in low-energy environments. Our results suggest that geographic models involving the colonization of coastal mangrove systems should include dispersal dynamics at mid-range scales, i.e., for our purposes here, beyond the local scale of the forest and up to 5 km distant. Studies of mangrove propagule deposition at various spatial scales are key to understanding regeneration limitations in natural gaps and restoration areas. Therefore, our study of mid-range propagule dispersal has broad application to plant ecology, restoration, and modeling. ?? Springer 2005.
Landscape Ecology↗
The Bayesian group lasso for confounded spatial data
Generalized linear mixed models for spatial processes are widely used in applied statistics. In many applications of the spatial generalized linear mixed model (SGLMM), the goal is to obtain inference about regression coefficients while achieving optimal predictive ability. When implementing the SGLMM, multicollinearity among covariates and the spatial random effects can make computation challenging and influence inference. We present a Bayesian group lasso prior with a single tuning parameter that can be chosen to optimize predictive ability of the SGLMM and jointly regularize the regression coefficients and spatial random effect. We implement the group lasso SGLMM using efficient Markov chain Monte Carlo (MCMC) algorithms and demonstrate how multicollinearity among covariates and the spatial random effect can be monitored as a derived quantity. To test our method, we compared several parameterizations of the SGLMM using simulated data and two examples from plant ecology and disease ecology. In all examples, problematic levels multicollinearity occurred and influenced sampling efficiency and inference. We found that the group lasso prior resulted in roughly twice the effective sample size for MCMC samples of regression coefficients and can have higher and less variable predictive accuracy based on out-of-sample data when compared to the standard SGLMM.
Journal of Agricultural, Biological, and Environme↗
An overview of agent-based models in plant biology and ecology
Agent-based modeling (ABM) has become an established methodology in many areas of biology, ranging from the cellular to the ecological population and community levels. In plant science, two different scales have predominated in their use of ABM. One is the scale of populations and communities, through the modeling of collections of agents representing individual plants, interacting with each other and with the environment. The other is the scale of the individual plant, through the modeling, by functional-structural plant models (FSPMs), of agents representing plant building blocks, or metamers, to describe the development of plant architecture and functions within individual plants. The purpose of this review is to show key results and parallels in ABM for growth, mortality, carbon allocation, competition, and reproduction across the scales from the plant organ to populations and communities on a range of spatial scale to the whole landscape. Several areas of application of ABMs are reviewed, showing that some issues are addressed by both population-level ABMs and FSPMs. Continued increase in the relevance of ABM to environmental science and management will be helped by greater integration of ABMs across these two scales.
Annals of Botany↗
Geochemical prospecting for ores; a progress report
Methods of prospecting for mineral deposits by means of chemical studies of residual soil, alluvium, glacial moraine, vegetation, and natural water were first applied on a systematic scale in Scandinavia and Russia about 15 years ago. Since the war, work in this field has been undertaken by several independent groups in the United States and Canada, including the Geochemical Prospecting Unit of the U. S. Geological Survey.Best results have been obtained by systematic analysis of zinc in residuum, ground water, and vegetation; copper and lead in gossan and residuum; tin in residuum and alluvium; molybdenum in residuum; and cobalt, nickel, and gold in vegetation. In addition, studies of plant ecologies and toxicity symptoms in vegetation in relation to metal-rich soil appear to be promising.Rapid colorimetric and spectrographic tests for traces of metals in soil, water, and vegetation have been developed for use under field conditions.
Economic Geology↗
Periodic heat flow in a stratified medium with application to permafrost problems
Solutions to the Fourier heat equation for quasi-steady periodic flow in a stratified semi-infinite medium can be obtained readily by standard methods. The results have wide application to studies of earth-temperature variations induced by diurnal, annual, and other periodic variations in ground surface temperature. Much of the previous work on this subject has been interpreted with reference to the solution for the homogeneous case; and this can be seriously in error when applied to stratified earth materials. One application of the theory is to the important problem of determining the minimum thickness of gravel fill required to maintain the material on which it rests (the subgrade) in a perennially frozen state in permafrost areas. The results indicate that the required fill thickness is quite sensitive to the thermal properties of the subgrade. If a thin layer of material with low thermal contact coefficient, such as spruce logs, is placed between the fill and subgrade, the thickness of fill required to maintain undisturbed permafrost can be greatly reduced. The thermal properties of the soil beneath the layer supporting plant growth can exercise an important influence on the temperature in that layer. This effect, which cannot be explained by studies of the ground surface and the surficial layer, is likely to have important application to plant ecology in the Arctic.
Open-File Report↗