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USGS2006

Commissioned Review. Carbon: freshwater plants

δ13C values for freshwater aquatic plant matter varies from −11 to −50‰ and is not a clear indicator of photosynthetic pathway as in terrestrial plants. Several factors affect δ13C of aquatic plant matter. These include: (1) The δ13C signature of the source carbon has been observed to range from +1‰ for HCO3− derived from limestone to −30‰ for CO2 derived from respiration. (2) Some plants assimilate HCO3−, which is –7 to –11‰ less negative than CO2. (3) C3, C4, and CAM photosynthetic pathways are present in aquatic plants. (4) Diffusional resistances are orders of magnitude greater in the aquatic environment than in the aerial environment. The greater viscosity of water acts to reduce mixing of the carbon pool in the boundary layer with that of the bulk solution. In effect, many aquatic plants draw from a finite carbon pool, and as in terrestrial plants growing in a closed system, biochemical discrimination is reduced. In standing water, this factor results in most aquatic plants having a δ13C value similar to the source carbon. Using Farquhar's equation and other physiological data, it is possible to use δ13C values to evaluate various parameters affecting photosynthesis, such as limitations imposed by CO2 diffusion and carbon source.

Plant, Cell & Environment↗

USGS2018

Reductions in tree performance during hotter droughts are mitigated by shifts in nitrogen cycling

Climate warming should result in hotter droughts of unprecedented severity in this century. Such droughts have been linked with massive tree mortality, and data suggest that warming interacts with drought to aggravate plant performance. Yet how forests will respond to hotter droughts remains unclear, as does the suite of mechanisms trees use to deal with hot droughts. We used an ecosystem‐scale manipulation of precipitation and temperature on piñon pine ( Pinus edulis ) and juniper ( Juniperus monosperma ) trees to investigate nitrogen (N) cycling‐induced mitigation processes related to hotter droughts. We found that while negative impacts on plant carbon and water balance are manifest after prolonged drought, performance reductions were not amplified by warmer temperatures. Rather, increased temperatures for 5 years stimulated soil N cycling under piñon trees and modified tree N allocation for both species, resulting in mitigation of hotter drought impacts on tree water and carbon functions. These findings suggest that adjustments in N cycling are likely after multi‐year warming conditions and that such changes may buffer reductions in tree performance during hotter droughts. The results highlight our incomplete understanding of trees' ability to acclimate to climate change, raising fundamental questions about the resistance potential of forests to long‐term, compound climatic stresses.

Plant, Cell & Environment↗

USGS2024

Direct and legacy effects of varying cool-season precipitation totals on ecosystem carbon flux in a semi-arid mixed grassland

In the semi-arid grasslands of the southwest United States, annual precipitation is divided between warm-season (July–September) convective precipitation and cool-season (December–March) frontal storms. While evidence suggests shifts in precipitation seasonal distribution, there is a poor understanding of the ecosystem carbon flux responses to cool-season precipitation and the potential legacy effects on subsequent warm-season carbon fluxes. Results from a two-year experiment with three cool-season precipitation treatments (dry, received 5th percentile cool-season total precipitation; normal, 50th; wet, 95th) and constant warm-season precipitation illustrate the direct and legacy effects on carbon fluxes, but in opposing ways. In wet cool-season plots, gross primary productivity (GPP) and ecosystem respiration (ER) were 103% and 127% higher than in normal cool-season plots. In dry cool-season plots, GPP and ER were 47% and 85% lower compared to normal cool-season plots. Unexpectedly, we found a positive legacy effect of the dry cool-season treatment on warm-season carbon flux, resulting in a significant increase in both GPP and ER in the subsequent warm season, compared to normal cool-season plots. Our results reveal positive legacy effects of cool-season drought on warm-season carbon fluxes and highlight the importance of the relatively under-studied cool-growing season and its direct/indirect impact on the ecosystem carbon budget.

Plant, Cell & Environment↗

USGS2021

Experimental warming across a tropical forest canopy height gradient reveals minimal photosynthetic and respiratory acclimation

Tropical forest canopies cycle vast amounts of carbon, yet we still have a limited understanding of how these critical ecosystems will respond to climate warming. We implemented in situ leaf-level + 3°C experimental warming from the understory to the upper canopy of two Puerto Rican tropical tree species, Guarea guidonia and Ocotea sintenisii . After approximately 1 month of continuous warming, we assessed adjustments in photosynthesis, chlorophyll fluorescence, stomatal conductance, leaf traits and foliar respiration. Warming did not alter net photosynthetic temperature response for either species; however, the optimum temperature of Ocotea understory leaf photosynthetic electron transport shifted upward. There was no Ocotea respiratory treatment effect, while Guarea respiratory temperature sensitivity ( Q 10 ) was down-regulated in heated leaves. The optimum temperatures for photosynthesis ( T opt ) decreased 3–5°C from understory to the highest canopy position, perhaps due to upper canopy stomatal conductance limitations. Guarea upper canopy T opt was similar to the mean daytime temperatures, while Ocotea canopy leaves often operated above T opt . With minimal acclimation to warmer temperatures in the upper canopy, further warming could put these forests at risk of reduced CO 2 uptake, which could weaken the overall carbon sink strength of this tropical forest.

Plant, Cell, and Environment↗

USGS2005

Mercury recycling in the United States in 2000

Reclamation and recycling of mercury from used mercury- containing products and treatment of byproduct mercury from gold mining is vital to the continued, though declining, use of this metal. Mercury is reclaimed from mercury-containing waste by treatment in multistep high-temperature retorts-the mercury is volatized and then condensed for purification and sale. Some mercury-containing waste, however, may be landfilled, and landfilled material represents loss of a recyclable resource and a threat to the environment. Related issues include mercury disposal and waste management, toxicity and human health, and regulation of mercury releases in the environment. End-users of mercury-containing products may face fines and prosecution if these products are improperly recycled or not recycled. Local and State environmental regulations require adherence to the Resource Conservation and Recovery Act and the Comprehensive Environmental Response, Compensation, and Liability Act to regulate generation, treatment, and disposal of mercury-containing products. In the United States, several large companies and a number of smaller companies collect these products from a variety of sources and then reclaim and recycle the mercury. Because mercury has not been mined as a principal product in the United States since 1992, mercury reclamation from fabricated products has become the main source of mercury. Principal product mercury and byproduct mercury from mining operations are considered to be primary materials. Mercury may also be obtained as a byproduct from domestic or foreign gold-processing operations. In the early 1990s, U.S. manufacturers used an annual average that ranged from 500 to 600 metric tons of recycled and imported mercury for fabrication of automobile convenience switches, dental amalgam, fluorescent lamps, medical uses and thermometers, and thermostats. The amount now used for fabrication is estimated to be 200 metric tons per year or less. Much of the data on mercury is estimated because it is a low-volume commodity and its production, use, and disposal is difficult to track. The prices and volumes of each category of mercury-containing material may change dramatically from year to year. For example, the average price of mercury was approximately $150 per flask from 2000 until 2003 and then rose sharply to $650 per flask in fall 2004 and approximately $850 per flask in spring 2005. Since 1927, the common unit for measuring and pricing mercury has been the flask in order to conform to the system used at Almaden, Spain (Meyers, 1951). One flask weighs 34.5 kilograms, and 29 flasks of mercury are contained in a metric ton. In the United States, the chlorine-caustic soda industry, which is the leading end-user of elemental mercury, recycles most of its mercury in-plant as home scrap. Annual purchases of replacement mercury by the chlorine-caustic soda industry indicate that some mercury may be lost through evaporation to the environment, put into a landfill as industrial waste, or trapped within pipes in the plant. Impending closure of domestic and foreign mercury-cell chlorine-caustic soda plants and the shift to nonmercury technology for chlorine-caustic soda production could ultimately result in a significant volume of elemental mercury for recycling, sale, or storage. Globally, mercury is widely used in artisanal, or small-scale, gold mining. Most of that mercury is lost to the environment and is not recycled. The recycling rate for mercury was not available owing to insufficient data in 2000, and the efficiency of mercury recycling was estimated to be 62 percent.

Circular↗

USGS2005

Mercury recycling in the United States in 2000

Open-File Report↗

USGS2001

Green fluorescent protein is lighting up fungal biology

Prasher ( 42 ) cloned a cDNA for the green fluorescent protein (GFP) gene from the jellyfish Aequorea victoria in 1992. Shortly thereafter, to the amazement of many investigators, this gene or derivatives thereof were successfully expressed and conferred fluorescence to bacteria and Caenorhabditis elegans cells in culture ( 10 , 31 ), followed by yeast ( 24 , 39 ), mammals ( 40 ), Drosophila ( 66 ), Dictyostelium ( 23 , 30 ), plants ( 28 , 49 ), and filamentous fungi ( 54 ). The tremendous success of GFP as a reporter can be attributed to unique qualities of this 238-amino-acid, 27-kDa protein which absorbs light at maxima of 395 and 475 nm and emits light at a maximum of 508 nm. The fluorescence of GFP requires only UV or blue light and oxygen, and therefore, unlike the case with other reporters (β-glucuronidase, β-galacturonidase, chloramphenicol acetyltransferase, and firefly luciferase) that rely on cofactors or substrates for activity, in vivo observation of gfp expression is possible with individual cells, with cell populations, or in whole organisms interacting with symbionts or environments in real time. Complications caused by destructive sampling, cell permeablization for substrates, or leakage of products do not occur. Furthermore, the GFP protein is extremely stable in vivo and has been fused to the C or N terminus of many cellular and extracellular proteins without a loss of activity, thereby permitting the tagging of proteins for gene regulation analysis, protein localization, or specific organelle labeling. The mature protein resists many proteases and is stable up to 65°C and at pH 5 to 11, in 1% sodium dodecyl sulfate or 6 M guanidinium chloride (reviewed in references 17 and 67 ), and in tissue fixed with formaldehyde, methanol, or glutaraldehyde. However, GFP loses fluorescence in methanol-acetic acid (3:1) and can be masked by autofluorescent aldehyde groups in tissue fixed with glutaraldehyde. Fluorescence is optimal at pH 7.2 to 8.0 ( 67 ). Limitations on GFP as a reporter for some applications are its low turnover rate, 2-h lag time for autoactivation of its chromophore, improper folding at high temperatures (37°C), which results in nonfluorescent and insoluble forms of the protein, and requirement for oxygen, which is not present in equal concentrations in all subcellular locations or cell types (reviewed in references 17 and 67 ). These characteristics of GFP, however, have not posed a problem for many applications, and mutant forms of GFP that have an ability to fold properly at high temperatures, increased solubility and fluorescence, reduced photobleaching ( 16 , 17 , 51 ), and reduced half-lives ( 1 ) have been developed. Coupled with fluorescence-activated cell sorting, confocal microscopy or quantitative image analysis techniques, GFP technology can be used to isolate transformed cells or specific cell types from populations of cells ( 14 ), to quantify gene expression of individual cells within whole organisms ( 8 ), or to assess the dispersal and biomass of organisms in complex environments, such as in animal or plant hosts ( 38 , 59 ), in biofilms ( 55 ), in fermentors ( 41 ), on leaf surfaces ( 53 , 61 ), or in soils ( 2 ). The vast majority of studies utilizing GFP expression in fungi have been with yeast (reviewed in reference 13 ). Ustilago maydis was the first filamentous fungus for which successful expression of gfp was reported ( 54 ), followed closely by Aspergillus nidulans ( 22 , 57 ) and Aureobasidium pullulans ( 61 ). Presently, gfp expression has been reported for 16 species comprising 12 genera of filamentous fungi, including Colletotrichum ( 21 , 44 ), Mycosphaerella ( 52 ), Magnaporthe ( 32 , 35 ), Cochliobolus ( 38 ), Trichoderma ( 2 , 70 ), Podospora ( 5 ), Sclerotinia ( 63 ), Schizophyllum ( 37 ), Aspergillus ( 20 , 47 , 50 ) and Phytophthora ( 7 , 62 ). In this review we draw on published reports, with the goal of providing an overview of GFP technology as it applies to the biology of filamentous fungi. These reports are not exhaustive of potential applications of GFP technology, as examples of genomic approaches to utilizing GFP in bacterial and yeast systems attest ( 4 , 46 , 60 , 65 ). Expression of gfp in filamentous fungi requires a gfp variant that is efficiently translated in fungi, a transformation system, and a fungal promoter that satisfies the requirements of a given experimental objective. Transformation of fungi has recently been reviewed by Gold et al. ( 26 ). Robinson and Sharon ( 44 ) suggest that GFP can actually be used to optimize transformation protocols. In addition to reporting the construction of a new fungal transformation vector that expresses SGFP under the control of the ToxA gene promoter from Pyrenophora tritici-repentis ( 12 ) and demonstrating its use in plant pathogens belonging to eight different genera of filamentous fungi ( Fusarium, Botrytis, Pyrenophora, Alternaria, Cochliobolus, Sclerotinia, Colletotrichum , and Verticillium ), in this review we also enumerate and describe a comprehensive list of vectors for expressing GFP in fungi.

Applied and Environmental Microbiology↗

USGS2022

Bet-hedging and best-bet strategies shape seed dormancy

Seed dormancy (i.e. delayed germination even when conditions are favourable) is a key plant characteristic that occurs among many species worldwide. But, what selective pressures led to seed dormancy? A recent study provides a major analysis of the factors driving this trait at the global scale (Zhang et al ., 2022 ). Using c. 12 000 species and 10 million records across the globe, they conclude that dormancy is a strategy for plants living under ‘seasonal/unpredictable’ environments; and suggest that bet-hedging could be the major mechanism behind the pattern. To reach their conclusions the authors relate the proportion of species with dormant seeds in a grid-cell global map against climate variables related to annual precipitation, temperature and seasonality. Then they showed that the most significant variables were those related to climate seasonality that they equate with unpredictable climates (although seasonal climates usually are highly predictable in their seasonal cycles).

New Phytologist↗

USGS2013

Changing patterns in the use, recycling, and material substitution of mercury in the United States

Environmental concerns have led to numerous regulations that have dramatically decreased the reported production and use of mercury in the United States since the 1980s. Government legislation and subsequent industry actions have led to increased collection of mercury-containing materials and the recovery of mercury through recycling. Mercury emissions have been reduced and effective alternatives to mercury products have been developed for many applications. This study updates and quantifies the changes in demand, supply, use, and material flow for mercury in various sectors in the United States that have taken place since 1996. Nearly all primary mercury produced in the United States is derived as a byproduct of processing of gold and silver ore in Nevada. Since 2001, annual production of mercury from gold and silver mining in Nevada has decreased by 22 percent overall because ore from greater depths containing low grade mercury is recovered, and mercury emissions from this source have decreased by 95 percent as a result of increased regulation and improved collection and suppression technology. The distribution of consumption of mercury in the United States has changed as a result of regulation (elimination of large-scale mercury use in the paint and battery sectors), reduction by consumers (decommissioning of mercury-cell chloralkali manufacturing capacity), and technological advances (improvements in dental, lighting, and wiring sectors). Mercury use in the chloralkali sector, the leading end-use sector in the United States in 1996, has declined by 98 percent from 136 metric tons (t) in 1996 to about 0.3 t in 2010 because of increased processing and recycling efficiencies and plant closures or conversion to other technologies. As plants were closed, mercury recovered from the infrastructure of decommissioned plants has been exported, making the United States a net exporter of mercury, even though no mercury has been produced as the primary product from mines in the United States since 1992. In 1996, the three leading end-use sectors for mercury in the United States were chloralkali manufacturing (accounting for 38 percent of consumption), electrical and electronic instrumentation (13 percent of consumption), and instruments and measuring devices (11 percent of consumption). In 2010, the three leading end-use sectors were dental amalgam (accounting for between 35 and 57 percent of consumption), electrical and electronic instrumentation (29 percent of consumption), and batteries (8 percent of consumption). Mercury use in lighting is increasing because incandescent lights are being phased out in favor of mercury-containing compact fluorescent bulbs, but the demand for mercury per unit produced is small. Dental amalgam constituted the largest amount of mercury in use in the United States. One study reported about 290 t of mercury in dental amalgam was estimated to be contained in human mouths, an estimated 30 t of mercury amalgam was treated as waste, 28.5 t of mercury amalgam was released to the environment, 6 t of amalgam was recycled, and 3.5 t was treated and stored in landfills in 2009. Mercury contained in products recovered by State, municipal, or industry collection activities is recycled, but the estimated overall recycling rate is less than 10 percent. Increasingly, the U.S. mercury recycling industry has been processing a significant amount of mercury-containing material derived from foreign gold mining operations or decommissioned mercury-cell chloralkali plants. Regulation of mercury export and storage is expected to result in surplus mercury inventories in the United States. The Mercury Export Ban Act of 2008 limits elemental mercury exports for unregulated uses such as artisanal gold mining after January 1, 2013, and requires development of adequate long-term storage facilities in the United States for elemental mercury. During the past 4 years, producers and recyclers of elemental mercury have been exporting large quantities of mercury in anticipation of this regulation, but the U.S. inventory of mercury in 2010 was estimated to have exceeded 7,000 t from Government stockpiles and industry stocks. Costs attributed to long-term storage may affect the competitiveness of mercury recycling.

Scientific Investigations Report↗

USGS2003

Alternative Sources of Energy - An Introduction to Fuel Cells

Fuel cells are important future sources of electrical power and could contribute to a reduction in the amount of petroleum imported by the United States. They are electrochemical devices similar to a battery and consist of a container, an anode, a cathode, catalysts, an intervening electrolyte, and an attached electrical circuit. In most fuel cell systems, hydrogen is supplied to the anode and oxygen to the cathode which results in the production of electricity, water, and heat. Fuel cells are comparatively efficient and reliable, have no moving parts, operate without combustion, and are modular and scale-able. Their size and shape are flexible and adaptable. In operation, they are nearly silent, are relatively safe, and generally do not pollute the environment. During recent years, scientists and engineers have developed and refined technologies relevant to a variety of fuel cells. Types of fuel cells are commonly identified by the composition of their electrolyte, which could be either phosphoric acid, an alkaline solution, a molten carbonate, a solid metal oxide, or a solid polymer membrane. The electrolyte in stationary power plants could be phosphoric acid, molten carbonates, or solid metal oxides. For vehicles and smaller devices, the electrolyte could be an alkaline solution or a solid polymer membrane. For most fuel cell systems, the fuel is hydrogen, which can be extracted by several procedures from many hydrogen-bearing substances, including alcohols, natural gas (mainly methane), gasoline, and water. There are important and perhaps unresolved technical problems associated with using fuel cells to power vehicles. The catalysts required in several systems are expensive metals of the platinum group. Moreover, fuel cells can freeze and not work in cold weather and can be damaged by impacts. Storage tanks for the fuels, particularly hydrogen, must be safe, inexpensive, of a reasonable size, and contain a supply sufficient for a trip of several hundred miles. Additional major problems will be the extensive and costly changes in the national infrastructure to obtain, store, and distribute large amounts of the fuels, and in related manufacturing

Bulletin↗

USGS1992

Petrographic and anatomical characteristics of plant material from two peat deposits of Holocene and Miocene age, Kalimantan, Indonesia

Samples from two peat-forming environments of Holocene and Miocene age in Kalimantan (Borneo), Indonesia, were studied petrographically using nearly identical sample preparation and microscopic methodologies. Both deposits consist of two basic types of organic material: plant organs/tissues and fine-grained matrix. There are seven predominant types of plant organs and tissues: roots possessing only primary growth, stems possessing only primary growth, leaves, stems/roots with secondary growth, secondary xylem fragments, fragments of cork cells, and macerated tissue of undetermined origin. The fine-grained matrix consists of fragments of cell walls and cell fillings, fungal remains, spores and pollen grains, and resin. Some of the matrix material does not have distinct grain boundaries (at ??500) and this material is designated amorphous matrix. The major difference between the Holocene peat and Miocene lignite in reflected light, oil immersion is a loss of red coloration in the cell walls of tissue in the lignite, presumably due to loss of cellulosic compounds. In addition, cortex and phloem tissue (hence primary roots and stems) are difficult to recognize in the lignite, probably because these large, thin-walled tissues are more susceptible to microbial degradation and compaction. Particle size in both peat and lignite samples display a bimodal distribution when measurements are transformed to a - log2 or phi (??), scale. Most plant parts have modes of 2-3?? (0.25 - 0.125 mm), whereas the finer-grained particulate matrix has modes of 7-9?? (0.008-0.002 mm). This similarity suggest certain degradative processes. The 2-3?? range may be a "stable" size for plant parts (regardless of origin) because this is a characteristics of a substrate which is most suitable for plant growth in peat. The finer-grained matrix material (7-9??) probably results from fungal decay which causes plant material to weaken and with slight physical pressure to shatter into its component parts, i.e. fragments of cell walls and fillings. The absence of differences in particle size between the peat and lignite also indicate little compaction of organic components; rather an extreme loss in water content and pore space has occurred from between the particles of organic material. ?? 1992.

Review of Palaeobotany and Palynology↗

USGS2009

Anacostia River fringe wetlands restoration project: final report for the five-year monitoring program (2003 through 2007)

The 6-hectare (ha) freshwater tidal Anacostia River Fringe Wetlands (Fringe Wetlands) were reconstructed along the mainstem of the Anacostia River in Washington, DC (Photograph 1, Figure 1) during the summer of 2003. The Fringe Wetlands consist of two separate planting cells. Fringe A, located adjacent to Lower Kingman Island, on the west bank of the Anacostia River, occupies 1.6 ha; Fringe B, located on the east bank of the Anacostia River, occupies 4.4 ha. This project is the third in a series of freshwater tidal wetland reconstructions on the Anacostia River designed and implemented by the US Army Corps of Engineers (USACE) Baltimore District and District Department of the Environment (DDOE) on lands managed by the National Park Service (NPS). The first was Kenilworth Marsh, reconstructed in 1993 (Syphax and Hammerschlag 2005); the second was Kingman Marsh, reconstructed in 2000 (Hammerschlag et al. 2006). Kenilworth and Kingman were both constructed in low-energy backwaters of the Anacostia. However, the Fringe Wetlands, which were constructed on two pre-existing benches along the high-energy mainstem, required sheet piling to provide protection from erosive impacts of increased flow and volume of water associated with storm events during the establishment phase (Photograph 2). All three projects required the placement of dredged sediment materials to increase elevations enough to support emergent vegetation (Photograph 3). The purpose of all three wetland reconstruction projects was to restore pieces of the once extensive tidal freshwater marsh habitat that bordered the Anacostia River historically, prior to the dredge and fill operations and sea wall installation that took place there in the early to mid-1900's (Photograph 4).

Washington;D.C.↗

USGS1988

Osmotic potential and projected drought tolerance of four phreatophytic shrub species in Owens Valley, California

A large part of the water used by plant communities growing on the floor of Owens Valley, California, is derived from a shallow unconfined aquifer. Fluctuations in the water table caused by groundwater withdrawal may result in periods when this water supply is not accessible to plants. The capacity of the plants to adapt to these periods of water loss depend on the availability of water stored in the soil and on physiological characteristics related to the ability of the plants to resist dehydration and wilting. Osmotic adjustment occurred in four phreatophytic shrub species at sites near bishop, California, where the water table had been lowered by a system of pump-equipped wells installed in the vicinity of vegetation transects. The pressure-volume techniques was used to determine osmotic potential and cell-wall elasticity between March 1985 and September 1986 for Atriplex torreyi, Chrysothamnus nauseosus , Sarcobatus vermiculatus, and Artemisia tridentata. Although not usually classified as a phreatophyte, Artemisia tridentata, where it grows on the valley floor, is apparently dependent on the depth to the water table. During late summer, osmotic potentials were 0.37 to 0.41 megapascal lower in plants growing on the site where the water table had been lowered compared to an adjacent site where the water table remained at its natural levels. Measurements of soil matric potential at the two sites indicated that osmotic adjustment occurred in response to stress caused by lowering the water table. A theoretical lower limit of osmotic adjustment was determined by comparing initial cell osmotic potentials with initial xylem water potentials. These experimentally derived limits indicated that A. torreyi and S. vermiculatus may maintain leaf cell turgor at significantly lower cell water potentials (about -4.5 megapascals) than C. nauseosus or A. tridentata (about -2.5 megapascals) and allows them to function in dryer soil environments. (Author 's abstract)

California↗

USGS2017

Disease protection and allelopathic interactions of seed-transmitted endophytic pseudomonads of invasive reed grass ( Phragmites australis )

Background and aims Non-native Phragmites australis (haplotype M) is an invasive grass that decreases biodiversity and produces dense stands. We hypothesized that seeds of Phragmites carry microbes that improve seedling growth, defend against pathogens and maximize capacity of seedlings to compete with other plants. Methods We isolated bacteria from seeds of Phragmites , then evaluated representatives for their capacities to become intracellular in root cells, and their effects on: 1.) germination rates and seedling growth, 2.) susceptibility to damping-off disease, and 3.) mortality and growth of competitor plant seedlings (dandelion ( Taraxacum officionale F. H. Wigg) and curly dock ( Rumex crispus L.)). Results Ten strains (of 23 total) were identified and characterized; seven were identified as Pseudomonas spp. Strains Sandy LB4 ( Pseudomonas fluorescens ) and West 9 ( Pseudomonas sp.) entered root meristems and became intracellular. These bacteria improved seed germination in Phragmites and increased seedling root branching in Poa annua . They increased plant growth and protected plants from damping off disease. Sandy LB4 increased mortality and reduced growth rates in seedlings of dandelion and curly dock. Conclusions Phragmites plants associate with endophytes to increase growth and disease resistance, and release bacteria into the soil to create an environment that is favorable to their seedlings and less favorable to competitor plants.

Plant and Soil↗

USGS2018

Evaluation of targeted and untargeted effects-based monitoring tools to assess impacts of contaminants of emerging concern on fish in the South Platte River, CO

Rivers in the arid Western United States face increasing influences from anthropogenic contaminants due to population growth, urbanization, and drought. To better understand and more effectively track the impacts of these contaminants, biologically-based monitoring tools are increasingly being used to complement routine chemical monitoring. This study was initiated to assess the ability of both targeted and untargeted biologically-based monitoring tools to discriminate impacts of two adjacent wastewater treatment plants (WWTPs) on Colorado's South Platte River. A cell-based estrogen assay ( in vitro , targeted) determined that water samples collected downstream of the larger of the two WWTPs displayed considerable estrogenic activity in its two separate effluent streams. Hepatic vitellogenin mRNA expression ( in vivo , targeted) and NMR-based metabolomic analyses ( in vivo , untargeted) from caged male fathead minnows also suggested estrogenic activity downstream of the larger WWTP, but detected significant differences in responses from its two effluent streams. The metabolomic results suggested that these differences were associated with oxidative stress levels. Finally, partial least squares regression was used to explore linkages between the metabolomics responses and the chemical contaminants that were detected at the sites. This analysis, along with univariate statistical approaches, identified significant covariance between the biological endpoints and estrone concentrations, suggesting the importance of this contaminant and recommending increased focus on its presence in the environment. These results underscore the benefits of a combined targeted and untargeted biologically-based monitoring strategy when used alongside contaminant monitoring to more effectively assess ecological impacts of exposures to complex mixtures in surface waters.

Colorado↗

USGS1969

Factors initiating phytoplankton blooms and resulting effects on dissolved oxygen in Duwamish River estuary, Seattle, Washington

Phytoplankton productivity, standing stock, and related environmental factors were studied during 1964-66 in the Duwamish River estuary, at Seattle, Wash., to ascertain the factors that affect phytoplankton growth in the estuary; a knowledge of these factors in turn permits the detection and evaluation of the influence that effluent nutrients have on phytoplankton production. The factors that control the concentration of dissolved oxygen were also evaluated because of the importance of dissolved oxygen to the salmonid populations that migrate through the estuary. Phytoplankton blooms, primarily of diatoms, occurred in the lower estuary during August 1965 and 1966. No bloom occurred during 1964, but the presence of oxygen-supersaturated surface water in August 1963 indicates that a bloom did occur then. Nutrients probably were not the primary factor controlling the timing of phytoplankton blooms. Ammonia ,and phosphate concentrations increased significantly downstream from the Municipality of Metropolitan Seattle's Renton Treatment Plant outfall after the plant began operation in June 1965, and concentrations of nitrogen and phosphorus were relatively high before operation of the Renton Treatment Plant and during nonbloom periods. The consistent coincidence of blooms with minimum fresh-water discharge and tidal exchange during August throughout the study period indicates that bloom timing probably was controlled mostly by hydrographic factors that determine retention time and stability of the surface-water layer. This control was demonstrated in part by a highly significant correlation of gross productivity with retention time (as indicated by fresh-water discharge) and vertical stability (as indicated by the difference between mean surface and mean bottom temperatures). The failure of a bloom to develop in 1964 is related to a minimum fresh-water discharge that was much greater than normal during that summer. Hydrographic factors are apparently important because, as shown by studies of other estuarine environments by other workers, phytoplankton production increases when the zone of vertical turbulent mixing is not markedly deeper than the compensation depth. Phytoplankton cells produced in the surface waters sink, thereby contributing oxidizable organic matter to the bottom saline-water wedge. The maximum BOD (biochemical oxygen demand) in this bottom wedge occurs in the same section of the estuary and ,at the same time as the maximum phytoplankton biomass (as indicated by chlorophyll a) and minimum DO (dissolved oxygen). Other sources of BOD occur in the estuary, and conditions of minimum discharge and tidal exchange assist in reducing DO. Nonetheless, the highly significant correlation of chlorophyll a with BOD throughout the summer indicates that respiration and decomposition of phytoplankton cells is dearly an important contributor of BOD. Increases in the biomass and resultant B0D of blooms because of increased effluent nutrients presumably would further decrease the concentration of DO. This possible effect of effluent nutrients was evaluated by laboratory .bioassays and by a comparison of mean annual biomasses in the estuary. A green algal population in vitro did increase in response to added effluent nutrients; however, the available field data suggest that a 46-percent increase in effluent discharge between 1965 and 1966 did not increase the estuary's phytoplankton biomass significantly.

Water Supply Paper↗

USGS2012

Data resources for the Wyoming Landscape Conservation Initiative (WLCI) Integrated Assessment (IA)

The data contained in this report were compiled, modified, and analyzed for the Wyoming Landscape Conservation Initiative (WLCI) Integrated Assessment (IA). The WLCI is a long-term science based effort to assess and enhance aquatic and terrestrial habitats at a landscape scale in southwest Wyoming while facilitating responsible energy development through local collaboration and partnerships. The IA is an integrated synthesis and analysis of WLCI resource values based on best available data and information collected from multiple agencies and organizations. It is a support tool for landscape-scale conservation planning and evaluation, and a data and analysis resource that can be used for addressing specific management questions. The IA analysis was conducted using a Geographic Information System in a raster (that is, a grid) environment using a cell size of 30 meters. To facilitate the interpretation of the data in a regional context, mean values were summarized and displayed at the subwatershed unit (WLCI subwatersheds were subset from the National Hydrography Dataset, Hydrologic Unit Code 12/Level 6). A dynamic mapping platform, accessed via the WLCI webpage at http://www.wlci.gov is used to display the mapped information, and to access underlying resource values that were combined to produce the final mapped results. The raster data used in the IA are provided here for use by interested parties to conduct additional analyses and can be accessed via the WLCI webpage. This series contains 74 spatial data sets: WLCI subwatersheds (vector) and 73 geotiffs (raster) that are segregated into the major categories of Multicriteria Index (including Resource Index and Condition), Change Agents, and Future Change. The Total Multicriteria Index is composed of the Aquatic Multicriteria Index and the Terrestrial Multicriteria Index. The Aquatic Multicriteria Index is composed of the Aquatic Resource Index and the Aquatic Condition. The Aquatic Resource Index is composed of the following components: Groundwater, Special Management Areas, and Priority Areas. The Aquatic Condition is composed of the following components: Focal Species, Species of Concern, Focal Ecosystems, and Proper Functioning Condition. The Terrestrial Multicriteria Index is composed of the Terrestrial Resource Index and the Terrestrial Condition. The Terrestrial Resource Index is composed of the following components: Special Management Areas, Agriculture, and Priority Areas. The Terrestrial Condition is composed of the following components: Focal Species, Big Game, Species of Concern, Rare Plants, and Focal Ecosystems. The Change Agents are composed the following components: Roads, Energy, Mines, and Urban. The Future Change is composed of the following components: Oil-Gas-Coal, Wind, Minerals, Climate-Temperature, Invasive Species, and Urban.

Wyoming↗

USGS2023

Multi-omics responses in tree swallow (Tachycineta bicolor) nestlings from the Maumee Area of Concern, Maumee River, Ohio

A multi-omics approach was utilized to identify altered biological responses and functions, and to prioritize contaminants to assess the risks of chemical mixtures in the Maumee Area of Concern (AOC), Maumee River, OH, USA. The Maumee AOC is designated by the United States Environmental Protection Agency as having significant beneficial use impairments, including degradation of fish and wildlife populations, bird or animal deformities or reproduction problems, and loss of fish and wildlife habitat. Tree swallow ( Tachycineta bicolor ) nestlings were collected at five sites along the Maumee River, which included wastewater treatment plants (WWTPs) and industrial land-use sites. Polychlorinated biphenyls (PCBs), polybrominated diphenyl ethers (PBDEs), polycyclic aromatic hydrocarbons (PAHs), polychlorinated dibenzo p dioxins and furans (PCDD/Fs), and chlorinated pesticide concentrations were elevated in Maumee tree swallows, relative to a remote reference site, Star Lake, WI, USA. Liver tissue was utilized for non-targeted transcriptome and targeted metabolome evaluation. A significantly differentially expressed gene cluster related to a downregulation in cell growth and cell cycle regulation was identified when comparing all Maumee River sites with the reference site. There was an upregulation of lipogenesis genes, such as PPAR signaling ( HMGCS2 , SLC22A5 ), biosynthesis of unsaturated fatty acids (FASN, SCD, ELOVL2, and FADS2), and higher lipogenesis related metabolites, such as docosapentaenoic acid (DPA), docosahexaenoic acid (DHA), eicosapentaenoic acid (EPA), and arachidonic acid (AA) at two industrial land-use sites, Ironhead and Maumee, relative to WWTP sites (Perrysburg and SideCut), and the reference site. Toledo Water, in the vicinity of the other two industrial sites and also adjacent to a WWTP, showed a mix of signals between industrial land-use and WWTP land-use. PAHs, oxychlordane, and PBDEs were determined to be the most likely causes of the differentiation in biological responses, including de novo lipogenesis and biosynthesis of unsaturated fatty acids.

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