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8 recordsLinked to original sources
USGS2021

Status and trends of pelagic and benthic prey fish populations in Lake Michigan, 2020

Lakewide acoustic (AC) and bottom trawl (BT) surveys are conducted annually to generate indices of pelagic and benthic prey fish densities in Lake Michigan. The BT survey had been conducted each fall from 1973 through 2019 using 12-m trawls at depths ranging from 9 to 110 m and included 70 fixed locations distributed across seven transects; this survey estimates densities of seven prey fish species (i.e., alewife, bloater, rainbow smelt, deepwater sculpin, slimy sculpin, round goby, ninespine stickleback) as well as for age-0 yellow perch and large burbot. The AC survey, which serves to estimate densities of three prey fish species (i.e., alewife, bloater, and rainbow smelt), had been conducted each late summer/early fall from 2004-2019. The data generated from these surveys are used to estimate various population parameters that are, in turn, used by state and tribal agencies in managing Lake Michigan fish stocks. The 2020 COVID-19 pandemic severely limited the Lake Michigan pelagic and benthic prey fish surveys. While the AC survey was not conducted, 32 tows across three of seven standard BT transects (Saugatuck, Waukegan and Port Washington) were completed during an abbreviated survey. Total prey fish biomass density from the abbreviated BT survey was 1.91 kg/ha, continuing a recent trend of historically low estimates below the long-term (i.e., 1973-2020) average of 34.94 kg/ha. Mean biomass of yearling and older (YAO) alewives in 2020 was 0.025 ± 0.017 kg/ha, tied for the lowest ever recorded on the BT survey. No age-0 alewife were captured in the bottom trawl and of the limited number (n=16) of alewife collected, none were older than age four. Bloater (1.39 kg/ha) and deepwater sculpin (0.47 kg/ha) accounted for greatest proportion of biomass in the BT survey, while biomass density of slimy sculpin, round goby and rainbow smelt were all ≤ 0.01 kg/ha. While caution must be taken when interpreting the results of the abbreviated BT survey, the estimates suggest that prey fish densities remain well below historical values.

Lake Michigan↗
USGS2025

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2024

A comprehensive understanding of fish populations and their interactions is the cornerstone of modern fishery management and the basis for Lake Erie’s Fish Community Objectives (FCOs) developed in 2020 (Francis et al. 2020). The 2024 U.S. Geological Survey (USGS) Lake Erie Biological Station Annual Report is responsive to these FCOs and the USGS obligations via a Memorandum of Understanding (MOU 2017) with the Great Lakes Fishery Commission (GLFC) Council of Lake Committees (CLC) to provide scientific information in support of fishery management. Goals for the USGS Great Lakes Deepwater Fish Assessment and Ecological Studies were to monitor long-term changes in the fish community and track population dynamics of key fishes of interest to management agencies. Specific to Lake Erie, expectations were sustained investigations of native percids, prey fish populations, and Lake Trout. All work was conducted as part of the Deepwater Science Program under the authority of the Great Lakes Fishery Research Authorization Act of 2019 (16 USC §941h). The USGS 2024 Deepwater Science Program fieldwork began in Lake Erie in March and concluded in December, using trawl, gill net, hydroacoustic, lower trophic sampling devices, and telemetry methods. This work resulted in 44 bottom trawls covering 41 ha of lake bottom and catching 48,936 fish totaling 995 kg in the West Basin of Lake Erie, with detailed results described below. Overnight gill net sets (n=25) for coldwater species were performed in the East Basin of Lake Erie. A total of 8 km of gillnet was deployed during these surveys, which caught 106 fish, 92 of which were native coldwater species: Lake Trout, Burbot, and Lake Whitefish. Results from coldwater species assessments will be reported in the Coldwater Task Group report to the GLFC and the CLC (CTG 2025). These reports are used to inform Lake Trout stocking decisions and direct lamprey control measures (16 USC §939a). USGS hydroacoustic sampling included twenty-six 5-km transects (130 km total) in the Central Basin as part of a collaborative lake-wide survey with details and results reported by the Forage Task Group (FTG 2025). Lower trophic sampling provided data from zooplankton samples (n=12) and water quality profiles (n=12) to populate a database maintained by the Michigan Department of Natural Resources (MDNR), Ontario Ministry of Natural Resources (OMNR), Ohio Department of Natural Resources (ODNR), Pennsylvania Fish and Boat Commission (PFBC), and New York State Department of Environmental Conservation (NYSDEC). USGS also assisted CLC member agencies with deployment and maintenance of Great Lakes Acoustic Telemetry Observation System (GLATOS) infrastructure throughout all three Lake Erie basins and tributaries, supporting multiple coordinated telemetry investigations. This report presents biomass-based summaries of fish communities in western Lake Erie derived from USGS bottom trawl surveys conducted from 2013 to 2024 during June and September. The survey design compliments the August ODNR- OMNRF effort by reinforcing stock assessments with more robust data. Analyses herein evaluated trends in total biomass, abundance of dominant predator and forage species, non-native species composition, biodiversity, and community structure. Data from this effort are accessible for download (Keretz et al. 2025)

Lake Erie↗
USGS2020

Fisheries research and monitoring activities of the Lake Erie Biological Station, 2019

A comprehensive understanding of fish populations and their interactions is the cornerstone of modern fishery management and the basis for Fish Community Goals and Objectives for Lake Erie (Ryan et al. 2003). This report is responsive to U.S. Geological Survey (USGS) obligations via Memorandum of Understanding (MOU) with the Great Lakes Council of Lake Committees (CLC) to provide scientific information in support of fishery management. Goals for the USGS Great Lakes Deepwater Fish Assessment and Ecological Studies in 2019 were to monitor long-term changes in the fish community and population dynamics of key fishes of interest to management agencies. Specific to Lake Erie, expectations of this agreement were sustained investigations of native percids, forage (prey) fish populations, and Lake Trout. Our 2019 deepwater program operations began in April and concluded in December, and utilized trawl, gillnet, hydroacoustic, lower trophic sampling, and telemetry methods. This work resulted in 88 bottom trawls covering 65 ha of lake-bottom and catching 24,140 fish totaling 3,622 kg during three separate trawl surveys in the West and Central basins of Lake Erie. Overnight gillnet sets (n=44) for cold water species were performed at 42 unique locations in the West and East basins of Lake Erie. A total of 8.0 km of gillnet was deployed during these surveys, which caught 286 fish, 114 of which were native coldwater species: Lake Trout, Burbot, and Lake Whitefish. USGS hydroacoustic surveys in 2019 produced 240 km of transects, and lower trophic sampling provided data from zooplankton samples (n=21) and water quality profiles (n=21) to populate a database maintained by the Ontario Ministry of Natural Resources and Forestry (OMNRF), Ohio Division of Natural Resources (ODNR), Michigan Division of Natural Resources (MDNR), Pennsylvania Fish and Boat Commission (PFBC), and New York State Department of Environmental Conservation (NYSDEC). USGS also assisted CLC member agencies with deployment and maintenance of the Great Lakes Acoustic Telemetry Observation System (GLATOS) throughout all three Lake Erie sub-basins, supporting multiple coordinated telemetry investigations. In 2019, Lake Trout investigations included annual gill net surveys and acoustic telemetry of spawning migration and habitat use in coordination with OMNRF, NYSDEC, and PFBC. Results from Lake Trout investigations were reported in the Coldwater Task Group annual report to the Great Lakes Fishery Commission (GLFC) and the CLC (Coldwater Task Group 2020). Likewise, interagency forage fish assessments conducted with hydroacoustics were summarized and reported in the Forage Task Group annual report (Forage Task Group 2020). This report presents biomass-based summaries of fish communities in western Lake Erie derived from USGS bottom trawl surveys conducted from 2013 to 2019 during June and September. The survey design provided temporal and spatial coverage that did not exist in the historic interagency trawl database, and thus complemented the August ODNR-OMNRF effort to reinforce stock assessments with more robust data. Analyses herein evaluated trends in: total biomass, abundance of dominant predator and forage species, non-native species composition, biodiversity and community structure. Data from this effort can be explored interactively online (https://lebs.shinyapps.io/western-basin/), and are accessible for download (https://doi.org/10.5066/P9LL6YOR, Keretz et al. 2020). Annual survey data are added to these sources as the data become available.

Lake Erie↗
USGS2008

Thiamine Deficiency Complex Workshop final report: November 6-7, 2008, Ann Arbor, MI

Fry mortality which was first observed in the late 1960s in Great Lakes salmonines and in Baltic Sea salmon in 1974 has now been linked to thiamine deficiency (historically referred to as Early Mortality Syndrome, or EMS and M74, respectively). Over the past 14 years significant strides have been made in our understanding of this perplexing problem. It is now known that thiamine deficiency causes embryonic mortality in these salmonids. Both overt mortality and secondary effects of thiamine deficiency are observed in juvenile and adult animals. Collectively the morbidity and mortality (fry and adult mortality, secondary metabolic and behavior affects in juveniles and adult fish) are referred to as Thiamine Deficiency Complex (TDC). A workshop was held in Ann Arbor, MI on 6-7 November 2008 that brought together 38 federal, state, provincial, tribal and university scientists to share information, present data and discuss the latest observations on thiamine status of aquatic animals with thiamine deficiency and the causative agent, thiaminase. Twenty presentations (13 oral and 7 posters) detailed current knowledge. In Lake Huron, low alewife Alosa pseudoharengus abundance has persisted and egg thiamine concentrations in salmonines continue to increase, along with evidence of natural reproduction in lake trout Salvelinus namaycush. Lake Michigan Chinook salmon Oncorhynchus tshawytscha appear to have a lower thiamine requirement than other salmonids in the lake. Lake Ontario American eel Anguilla rostrata foraging on alewife have approximately one third the muscle thiamine compared to eels not feeding on alewife, suggesting that eels may be suffering from thiamine deficiency. Secondary effects of low thiamine exist in Great Lakes salmonines and should not be ignored. Thiaminase activity in dreissenid mussels is extremely high but a connection to TDC has not been made. Thiaminase in net plankton was found more consistently in lakes Michigan and Ontario than other lakes evaluated. The biological role of thiaminase I, associated with thiamine deficiency, remains to be determined whereas thiaminase II has been reported to be part of a salvage pathway leading to thiamine synthesis. The use of gene array technology and 3-dimensional histology is adding new understanding to the affects of thiamine deficiency. Research is needed to determine the thiamine status of species feeding on dreissenids, the environmental sources of thiaminase and the biological role of thiaminase I.

Research Status Report↗
USGS2009

Thiamine content of eggs and lengths of coho salmon (Oncorhynchus kisutch) in relation to abundance of alewife (Alosa pseudoharengus) in eastern Lake ontario, 2003 to 2006

Early mortality syndrome in fry of Great Lakes salmonines is linked to reduced levels of thiamine in eggs, which reflects maternal consumption of forage fishes such as alewife (Alosa pseudoharengus) that contain thiaminase, an enzyme that destroys thiamine. We assessed annual variations in abundance and condition of alewives and thiamine status of coho salmon (Oncorhynchus kisutch) in Lake Ontario. We analyzed total thiamine in eggs of 20 coho salmon collected annually between 2003 and 2006 at the Salmon River Hatchery on the Salmon River, New York. Alewife abundance was assessed annually in southern and eastern Lake Ontario with bottom trawls during late April and early May. Mean thiamine concentration in eggs varied annually, with those collected in 2003 (2.5 nmol/g) being significantly higher than those collected in 2004 to 2006 (1.5 to 1.7 nmol/g). Although we did not test survival of fry, if reported threshold levels of thiamine for preventing mortality of Lake Michigan coho salmon fry apply, then many or most Lake Ontario coho salmon produced fry were likely to incur thiamine-deficiency mortality, especially during years 2004 to 2006. Comparison to indices of annual abundance of alewife in Lake Ontario with thiamine concentration in coho salmon eggs failed to show any significant correlations (P > 0.05). However, total length of female spawning coho salmon was positively correlated (P < 0.05) with increasing condition and estimated energy content of adult alewives in the previous spring. These results suggest that growth of coho salmon in Lake Ontario was first limited by energy intake, whereas the amount of thiamine provided by alewives was sufficient for growth (in length) but not for producing thiamine-adequate eggs.

East Lake Ontario↗
USGS1983

Biology, population structure, and estimated forage requirements of lake trout in Lake Michigan

Data collected during successive years (1971-79) of sampling lake trout ( Salvelinus namaycush ) in Lake Michigan were used to develop statistics on lake trout growth, maturity, and mortality, and to quantify seasonal lake trout food and food availability. These statistics were then combined with data on lake trout year-class strengths and age-specific food conversion efficiencies to compute production and forage fish consumption by lake trout in Lake Michigan during the 1979 growing season (i.e., 15 May-1 December). An estimated standing stock of 1,486 metric tons (t) at the beginning of the growing season produced an estimated 1,129 t of fish flesh during the period. The lake trout consumed an estimated 3,037 t of forage fish, to which alewives ( Alosa pseudoharengus ) contributed about 71%, rainbow smelt ( Osmerus mordax ) 18%, and slimy sculpins ( Cottus cognatus ) 11%. Seasonal changes in bathymetric distributions of lake trout with respect to those of forage fish of a suitable size for prey were major determinants of the size and species compositions of fish in the seasonal diet of lake trout.

Technical Paper↗
USGS2017

Report from the Workshop on Coregonine Restoration Science

Summary Great Lakes fishery managers have the opportunity and have expressed interest in reestablishing a native forage base in the Great Lakes consisting of various forms and species within the genus Coregonus . This report summarizes the proceedings of a workshop focused on a subset of the genus, and the term “coregonines” is used to refer to several species of deepwater ciscoes (also known as “chubs”) and the one more pelagic-oriented cisco species ( Coregonus artedi , also known as “lake herring”). As the principal conservation agency for the United States Government, the Department of Interior has unique and significant authorities and capacities to support a coregonine reestablishment program in the Great Lakes. To identify and discuss key uncertainties associated with such a program and develop a coordinated approach, the U.S. Geological Survey (USGS) and the U.S. Fish and Wildlife Service (FWS), the principal Department of the Interior bureaus to address Great Lakes fishery issues, held the first of a series of workshops on coregonine science in Ann Arbor, Michigan, on October 11–13, 2016. Workshop objectives were to identify (1) perceived key uncertainties associated with coregonine restoration in the Great Lakes and (2) DOI capacities for addressing these key uncertainties.

Open-File Report↗
USGS1973

Lake Michigan: Man's effects on native fish stocks and other biota

Man's activities have caused great changes in Lake Michigan in the past 120 years. Although changes in water chemistry and lower biota have been generally modest (except locally), those in native fish stocks have been vast. Exploitation, exotic fish species, and eutrophication and other forms of pollution all have played a role in bringing about the changes (mostly declines in abundance) in fish populations. Exploitation resulted in a noticeable reduction in abundance of certain native species (especially whitefish) soon after the establishment of the commercial fishery in the 1840's. By the 1930's the sturgeon and the two largest deepwater ciscoes (Coregonus nigripinnis and C. johannae) became severely depleted. Other species- whitefish (Coregonus clupeaformis), lake trout (Salvelinus namaycush), and lake herring (C. artedii)- remained important commercially, but at a lower level of production than originally; greatly increased fishing effort and efficiency were required to maintain even these decreased catches. The catch of intermediate-size ciscoes held relatively stable, but again only through sharply increased fishing effort and efficiency. The earliest serious effects of exotic fish species on native fish stocks may have been during the 1930's, when smelt (Osmerus mordax), first became abundant. Powerful influences by exotics were not obvious, however, until the 1940's, when the sea lamprey's (Petromyzon marinus) predation on several species, particularly the lake trout, became critical. In the 1950's the sea lamprey was joined by the alewife (Alosa pseudoharengus), another exotic strongly deleterious to several native fish. The alewife apparently inhibited reproduction of deepwater ciscoes, yellow perch (Perca flavescens), deepwater sculpins (Myoxocephalus quadricornis), emerald shiners (Notropis atherinoides), and perhaps others (through competing with young, or feeding on them). At the same time, however, the alewife as a prolific forage fish has made possible the highly successful introduction of several species of salmonines. The effects of accelerated eutrophication and other pollution, although not always as easy to identify as the influences of other factors, were nevertheless clearly important as early as the mid-1800's. The first conspicuous contamination of Lake Michigan was by sawmill wastes, which covered spawning grounds in streams and around stream mouths. This type of pollution was particularly destructive to whitefish. Other forms of stream degradation (e.g., dams, deforestation of watersheds) although not strictly "pollution," must also have been detrimental to stream spawners. Heavy pollution in southern Green Bay (a large area of the bottom of which is now covered with anoxic gray sludge) probably has resulted in reduction in abundance of several species, e.g., lake herring and walleye (Stizostedion v. vitreum). Exploitation was largely responsible for the changes in Lake Michigan fish stocks before the invasion of the smelt, and probably before the invasion of the sea lamprey. The lamprey and alewife, however, have exerted a greater impact than the fishery on native fish populations in recent decades. Accelerated eutrophication and other pollution, although important, have not equalled the other factors in causing changes in native fish populations.

Technical Report↗