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USGS2011

Referees and the publications crisis

Routine refereeing by peers of manuscripts submitted to scholarly journals is a logical and effective device that can obviate ‘crankiness, irrelevance and gross incompetence’ [ Ziman , 1970 a ] on the one hand and minimize editorial arbitrariness on the other. As reviewed by Zuckerman and Merton [1971], the device has historical roots that extend back to the beginning of the first scholarly journals, such as Transactions of the Royal Society, and Journal des Scavans . The growth of science since World War II and the pressure of burgeoning manuscript submission appear to have been important factors in making automatic peer review nearly universal in American and British Commonwealth natural science journals and in international journals influenced by Anglo‐North Americans. A 1962 survey cited by Zuckerman and Merton [1971] found that 71% of 156 physical and biological science journals in 13 countries made use of referees.

Eos, Earth and Space Science News↗

USGS2008

Mapping the information landscape: Discerning peaks and valleys for ecological monitoring

We investigate previously unreported phenomena that have a potentially significant impact on the design of surveillance monitoring programs for ecological systems. Ecological monitoring practitioners have long recognized that different species are differentially informative of a system's dynamics, as codified in the well-known concepts of indicator or keystone species. Using a novel combination of analysis techniques from nonlinear dynamics, we describe marked variation among spatial sites in information content with respect to system dynamics in the entire region. We first observed these phenomena in a spatially extended predator-prey model, but we observed strikingly similar features in verified water-level data from a NOAA/NOS Great Lakes monitoring program. We suggest that these features may be widespread and the design of surveillance monitoring programs should reflect knowledge of their existence.

Journal of Biological Physics↗

USGS2007

Spatial and temporal variability in oceanographic and meteorologic forcing along Central California and its implications on nearshore processes

In the past two decades, the understanding of the important large-scale phenomena (El Niño, upwelling, California current, etc) that drive physical, chemical, and biological processes along the US West Coast has greatly improved. However, the ability to predict the influence of annual and inter-annual events on a regional scale still remains limited. High-resolution hourly data from 6 National Oceanographic and Atmospheric Administration (NOAA) buoys deployed since the early 1980's off Central California were analyzed to improve our understanding of spatial and temporal variability of oceanographic and meteorologic forcing along the coastline. Seasonal to inter-annual trends in wave height, wave period, sea level barometric pressure, sea-surface temperature, and wind direction were identified, as were significant departures in these trends during El Niño and La Niña periods. The results suggest there are increasing wave heights and wave periods, decreasing sea level barometric pressures and variability in sea-surface temperatures, and increasingly variable winds off Central California between 1980 and 2002. The impact of these climatic trends on coastal physical, geological and biologic processes will also be addressed.

California↗

USGS2005

Geochemistry and the understanding of ground-water systems

Geochemistry has contributed significantly to the understanding of ground-water systems over the last 50 years. Historic advances include development of the hydrochemical facies concept, application of equilibrium theory, investigation of redox processes, and radiocarbon dating. Other hydrochemical concepts, tools, and techniques have helped elucidate mechanisms of flow and transport in ground-water systems, and have helped unlock an archive of paleoenvironmental information. Hydrochemical and isotopic information can be used to interpret the origin and mode of ground-water recharge, refine estimates of time scales of recharge and ground-water flow, decipher reactive processes, provide paleohydrological information, and calibrate ground-water flow models. Progress needs to be made in obtaining representative samples. Improvements are needed in the interpretation of the information obtained, and in the construction and interpretation of numerical models utilizing hydrochemical data. The best approach will ensure an optimized iterative process between field data collection and analysis, interpretation, and the application of forward, inverse, and statistical modeling tools. Advances are anticipated from microbiological investigations, the characterization of natural organics, isotopic fingerprinting, applications of dissolved gas measurements, and the fields of reaction kinetics and coupled processes. A thermodynamic perspective is offered that could facilitate the comparison and understanding of the multiple physical, chemical, and biological processes affecting ground-water systems.

Hydrogeology Journal↗

USGS2011

Changes in Selected Metals Concentrations from the Mid-1980s to the Mid-2000s in a Stream Draining the Picher Mining District of Oklahoma

After abandonment in the late 1960s, the Picher mining district of Oklahoma, once the largest source of lead and zinc in the world, continued to be affected by severe environmental degradation, with scattered subsidence and abundant toxic metals such as cadmium and lead seeping from flooded underground mine workings and seeping and running off from as much as 60 million tons of mine tailings remaining at the land surface. Water-quality data collected during the mid-1980s and the mid-2000s at the Tar Creek at 22nd Street Bridge in Miami, Oklahoma streamflow-gaging station (USGS number 07185095), located downstream from much of the district, indicate that total concentrations of iron, manganese, and zinc significantly decreased between the two sampling periods. Those water-quality improvements probably are due to a combination of reclamation activities and natural attenuation processes such as stabilization of exposed minerals in flooded underground mine workings, progressive wind and water erosion of the most readily erodible metalliferous particles from tailings, and colonization of volunteer plants that reduce physical erosion of soils and tailings.

Kansas, Missouri, Oklahoma↗

USGS2014

The value of geophysical methods in ground‐water studies

Two meanings are unfortunately given to the term geophysics. In the broad sense, based on the etymology of the term, geophysics means the physics of the Earth. This is its significance in the names “Geophysical Laboratory of the Carnegie Institution of Washington,” “International Union of Geodesy and Geophysics,” and “American Geophysical Union.” In this sense the sciences of geology and hydrology are largely geophysics, although in part they are geochemistry or biology. Geologists and hydraulic engineers who are elected to membership in the American Geophysical Union are, however, often surprised to find that they are regarded as “geophysicists.” I hope that when the Union establisnes a journal, its name will include the expression “Earth physics” or “Physics of the Earth,” in order that there will be no misunderstanding as to its scope.

Eos, Transactions, American Geophysical Union↗

USGS2024

A semi-mechanistic model for partitioning evapotranspiration reveals transpiration dominates the water flux in drylands

Popular evapotranspiration (ET) partitioning methods make assumptions that might not be well-suited to dryland ecosystems, such as high sensitivity of plant water-use efficiency (WUE) to vapor pressure deficit (VPD). Our objectives were to (a) create an ET partitioning model that can produce fine-scale estimates of transpiration (T) in drylands, and (b) use this approach to evaluate how climate controls T and WUE across ecosystem types and timescales along a dryland aridity gradient. We developed a novel, semi-mechanistic ET partitioning method using a Bayesian approach that constrains abiotic evaporation using process-based models, and loosely constrains time-varying WUE within an autoregressive framework. We used this method to estimate daily T and weekly WUE across seven dryland ecosystem types and found that T dominates ET across the aridity gradient. Then, we applied cross-wavelet coherence analysis to evaluate the temporal coherence between focal response variables (WUE and T/ET) and environmental variables. At yearly scales, we found that WUE at less arid, higher elevation sites was primarily limited by atmospheric moisture demand, and WUE at more arid, lower elevation sites was primarily limited by moisture supply. At sub-yearly timescales, WUE and VPD were sporadically correlated. Hence, ecosystem-scale dryland WUE is not always sensitive to changes in VPD at short timescales, despite this being a common assumption in many ET partitioning models. This new ET partitioning method can be used in dryland ecosystems to better understand how climate influences physically and biologically driven water fluxes.

New Mexico↗

USGS1970

Control methods for snail-borne zoonoses

All trematodes which cause infections and diseases in humans (zoonoses) require snails for their first intermediate host. Some have additional intermediate hosts such as crustaceans, fishes and frogs. In this paper I have discussed the use of various procedures for controlling snail populations thereby reducing the population of trematodes whose cercariae penetrate the skin of man, or which are acquired by eating raw aquatic vegetation such as watercress, or which cause pathology in fish. Biological, chemical, and physical snail control techniques are discussed. The most promising molluscucides are copper compounds, Bayluscide, biocidal rubber and molluscicidal bait.

Journal of Wildlife Diseases↗

USGS2005

Bioeconomic analysis of selected conservation practices on soil erosion and freshwater fisheries

Farmers can generate environmental benefits (improved water quality and fisheries and wildlife habitat), but they may not be able to quantify them. Furthermore, farmers may reduce their incomes from managing lands to produce these positive externalities but receive little monetary compensation in return. This study simulated the relationship between agricultural practices, water quality, fish responses to suspended sediment and farm income within two small watersheds, one of a cool water stream and one of a warm water stream. Using the Agricultural Drainage and Pesticide Transport (ADAPT) model, this study related best management practices (BMPs) to calculated instream suspended sediment concentrations by estimating sediment delivery, runoff, base flow, and streambank erosion to quantify the effects of suspended sediment exposure on fish communities. By implementing selected BMPs in each watershed, annual net farm income declined $18,000 to $28,000 (1 to 3 percent) from previous levels. “Lethal” fish events from suspended sediments in the cool water watershed decreased by 60 percent as conservation tillage and riparian buffers increased. Despite reducing suspended sediments by 25 percent, BMPs in the warm water watershed did not reduce the negative response of the fisheries. Differences in responses (physical and biological) between watersheds highlight potential gains in economic efficiency by targeting BMPs or by offering performance based “green payments.”

Journal of the American Water Resources Associatio↗

USGS2005

Physically modeling operative temperatures and evaporation rates in amphibians

(1) We designed a physical model that simulates the thermal and evaporative properties of live Western toads ( Bufo boreas ). (2) In controlled tests, the model tracked the body temperature of live toads with an average error of 0.3±0.03 °C (test range=4–30 °C). (3) It estimated the evaporative water loss of live toads with an average error of 0.35–0.65 g/h, or about 14% (test range=0.7–9 g/h). (4) Data collected with this physical model should provide an effective way for biologists to better understand habitat selection in toads and other amphibians.

Journal of Thermal Biology↗

USGS2007

A watershed approach to ecosystem monitoring in Denali National Park and preserve, Alaska

The National Park Service and the National Biological Service initiated research in Denali National Park and Preserve, a 2.4 million-hectare park in southcentral Alaska, to develop ecological monitoring protocols for national parks in the Arctic/Subarctic biogeographic area. We are focusing pilot studies on design questions, on scaling issues and regionalization, ecosystem structure and function, indicator selection and evaluation, and monitoring technologies. Rock Creek, a headwater stream near Denali headquarters, is the ecological scale for initial testing of a watershed ecosystem approach. Our conceptual model embraces principles of the hydrological cycle, hypotheses of global climate change, and biological interactions of organisms occupying intermediate, but poorly studied, positions in Alaskan food webs. The field approach includes hydrological and depositional considerations and a suite of integrated measures linking key aquatic and terrestrial biota, environmental variables, or defined ecological processes, in order to establish ecological conditions and detect, track, and understand mechanisms of environmental change. Our sampling activities include corresponding measures of physical, chemical, and biological attributes in four Rock Creek habitats believed characteristic of the greater system diversity of Denali. This paper gives examples of data sets, program integration and scaling, and research needs.

Journal of the American Water Resources Associatio↗

USGS2010

A trial of two trouts: Comparing the impacts of rainbow and brown trout on a native galaxiid

Rainbow trout Oncorhynchus mykiss and brown trout Salmo trutta are the world's two most widespread exotic fishes, dominate the fish communities of most cold-temperate waters in the southern hemisphere and are implicated in the decline and extirpation of native fish species. Here, we provide the first direct comparison of the impacts of rainbow and brown trout on populations of a native fish by quantifying three components of exotic species impact: range, abundance and effect. We surveyed 54 small streams on the island of Chilo?? in Chilean Patagonia and found that the rainbow trout has colonized significantly more streams and has a wider geographic range than brown trout. The two species had similar post-yearling abundances in allopatry and sympatry, and their abundances depended similarly on reach-level variation in the physical habitat. The species appeared to have dramatically different effects on native drift-feeding Aplochiton spp., which were virtually absent from streams invaded by brown trout but shared a broad sympatric range with rainbow trout. Within this range, the species' post-yearling abundances varied independently before and after controlling for variation in the physical habitat. In the north of the island, Aplochiton spp. inhabited streams uninvaded by exotic trouts. Our results provide a context for investigating the mechanisms responsible for apparent differences in rainbow and brown trout invasion biology and can help inform conservation strategies for native fishes in Chilo?? and elsewhere. ?? 2010 The Authors. Journal compilation ?? 2010 The Zoological Society of London.

Animal Conservation↗

USGS2018

UZIG research: Measurement and characterization of unsaturated zone processes under wide-ranging climates and changing conditions

Unsaturated zone properties and processes are central to understanding the interacting effects of land-use change, contamination, and hydroclimate on our ability to grow food, sustain clean water supplies, and minimize loss of life and property. Advances in unsaturated zone science are being achieved through collaborations across traditional boundaries where information from biological, physical, and chemical disciplines is combined for new insights. The Unsaturated Zone Interest Group (UZIG) is an organization that exists principally to promote multidisciplinary collaborations and the sharing of ideas, expertise, and technical assets. Here we summarize key findings from 14 papers, several of which originated from a meeting convened by UZIG in 2017 at the University of Florida in Gainesville titled “Land-Use Change, Climate Change, and Hydrologic Extremes: Unsaturated Zone Responses and Feedbacks.” This special section of Vadose Zone Journal contains multidisciplinary research in three general categories relevant to measuring and understanding unsaturated zone responses to changing land uses and climate: (i) unsaturated zone properties and processes; (ii) soil–plant–atmosphere interactions; and (iii) novel field sampling devices. A strong cross-cutting theme in these papers is the value of continuous monitoring data and ways of utilizing them to discover novel hydrologic, biologic, and pedologic information. As climatic and land-use conditions change and demands for resources and stresses on ecosystems continue to intensify, it is vital to improve our fundamental understanding of the processes at work in the unsaturated zone. Toward that goal, we discuss the need for improved ground-based unsaturated zone monitoring networks.

Vadose Zone Journal↗

USGS2012

Strategies for soil quality assessment using VNIR gyperspectral spectroscopy in a western Kenya Chronosequence

Visible and near-infrared reflectance spectroscopy (VNIRS) is a rapid and nondestructive method that can predict multiple soil properties simultaneously, but its application in multidimensional soil quality (SQ) assessment in the tropics still needs to be further assessed. In this study, VNIRS (350–2500 nm) was employed to analyze 227 air-dried soil samples of Ultisols from a soil chronosequence in western Kenya and assess 16 SQ indicators. Partial least squares regression (PLSR) was validated using the full-site cross-validation method by grouping samples from each farm or forest site. Most suitable models successfully predicted SQ indicators (R 2 ≥ 0.80; ratio of performance to deviation [RPD] ≥ 2.00) including soil organic matter (OM LOI ), active C, Ca, cation exchange capacity (CEC), and clay. Moderately-well predicted indicators (0.50 ≤ R 2 < 0.80; 1.40 ≤ RPD < 2.00) were water stable aggregation (WSA), Cu, silt, Mg, pH, sand, water content at permanent wilting point (Θ pwp ), and field capacity (Θ fc ). Poorly predicted indicators (R 2 < 0.50; RPD < 1.40) were EC, S, P, available water capacity (AWC), K, Zn, and penetration resistance. Combining VNIRS with selected field- and laboratory-measured SQ indicator values increased predictability. Furthermore, VNIRS showed moderate to substantial agreement in predicting interpretive SQ scores and a composite soil quality index (CSQI) especially when combined with directly measured SQ indicator values. In conclusion, VNIRS has good potential for low cost, rapid assessment of physical and biological SQ indicators but conventional soil chemical tests may need to be retained to provide comprehensive SQ assessments.

Western Kenya↗

USGS1983

Selective control of common carp: Ineffectiveness of 2-(digeranylamino)-ethanol (GD-174) in pond trials

The candidate piscicide, 2‐(digeranylamino)‐ethanol, (commonly known as GD‐174) was subjected to efficacy trials in ponds under a wide variety of conditions. Results of the trials were disappointing considering that laboratory tests had shown the compound to be selectively toxic to common carp ( Cyprinus carpio ). Results of pretreatment, on‐site toxicity tests were misleading and indicated concentrations that failed to kill all of the carp in 19 of 23 ponds. In a few instances, the chemical killed the carp with little or no effect on nontarget fishes. No fish were killed in some trials and large numbers of nontarget fishes were killed in others. Twenty of 25 pond trials were judged to be unsuccessful. Success or failure of pond treatments could not be correlated with any particular combination of physical, chemical, and biological factors. Because the activity of GD‐174 against mixed populations of fish cannot be predicted, further development of this compound as a selective toxicant for carp has been discontinued at the National Fishery Research Laboratory.

North American Journal of Fisheries Management↗

USGS2018

Associations of stream geomorphic conditions and prevalence of alternative reproductive tactics among sockeye salmon populations

In many species, males may exhibit alternative life histories to circumvent the costs of intrasexual competition and female courtship. While the evolution and underlying genetic and physiological mechanisms behind alternative reproductive tactics are well studied, there has been less consideration of the ecological factors that regulate their prevalence. Here, we examine six decades of age composition records from thirty‐six populations of sockeye salmon ( Oncorhynchus nerka ) to quantify associations between spawning habitat characteristics and the prevalence of precocious sneakers known as ‘jacks’. Jack prevalence was independent of neutral genetic structure among stream populations, but varied among habitat types and as a function of continuous geomorphic characteristics. Jacks were more common in streams relative to beaches and rivers, and their prevalence was negatively associated with stream width, depth, elevation, slope and area, but positively related to bank cover. Behavioural observations showed that jacks made greater use of banks, wood and shallows than guard males, indicating that their reproductive success depends on the availability of such refuges. Our results emphasize the role of the physical habitat in shaping reproductive tactic frequencies among populations, likely through local adaptation in response to variable fitness expectations under different geomorphic conditions.

Journal of Evolutionary Biology↗

USGS2015

Stock-specific advection of larval walleye ( Sander vitreus ) in western Lake Erie: Implications for larval growth, mixing, and stock discrimination

Physical processes can generate spatiotemporal heterogeneity in habitat quality for fish and also influence the overlap of pre-recruit individuals (e.g., larvae) with high-quality habitat through hydrodynamic advection. In turn, individuals from different stocks that are produced in different spawning locations or at different times may experience dissimilar habitat conditions, which can underlie within- and among-stock variability in larval growth and survival. While such physically-mediated variation has been shown to be important in driving intra- and inter-annual patterns in recruitment in marine ecosystems, its role in governing larval advection, growth, survival, and recruitment has received less attention in large lake ecosystems such as the Laurentian Great Lakes. Herein, we used a hydrodynamic model linked to a larval walleye ( Sander vitreus ) individual-based model to explore how the timing and location of larval walleye emergence from several spawning sites in western Lake Erie (Maumee, Sandusky, and Detroit rivers; Ohio reef complex) can influence advection pathways and mixing among these local spawning populations (stocks), and how spatiotemporal variation in thermal habitat can influence stock-specific larval growth. While basin-wide advection patterns were fairly similar during 2011 and 2012, smaller scale advection patterns and the degree of stock mixing varied both within and between years. Additionally, differences in larval growth were evident among stocks and among cohorts within stocks which were attributed to spatiotemporal differences in water temperature. Using these findings, we discuss the value of linked physical–biological models for understanding the recruitment process and addressing fisheries management problems in the world's Great Lakes.

Journal of Great Lakes Research↗

USGS2016

A simple prioritization tool to diagnose impairment of stream temperature for coldwater fishes in the Great Basin

We provide a simple framework for diagnosing the impairment of stream water temperature for coldwater fishes across broad spatial extents based on a weight-of-evidence approach that integrates biological criteria, species distribution models, and geostatistical models of stream temperature. As a test case, we applied our approach to identify stream reaches most likely to be thermally impaired for Lahontan Cutthroat Trout Oncorhynchus clarkii henshawi in the upper Reese River, located in the northern Great Basin, Nevada. We first evaluated the capability of stream thermal regime descriptors to explain variation across 170 sites, and we found that the 7-d moving average of daily maximum stream temperatures (7DADM) provided minimal among-descriptor redundancy and, based on an upper threshold of 20°C, was also a good indicator of acute and chronic thermal stress. Next, we quantified the range of Lahontan Cutthroat Trout within our study area using a geographic distribution model. Finally, we used a geostatistical model to assess spatial variation in 7DADM and predict potential thermal impairment at the stream reach scale. We found that whereas 38% of reaches in our study area exceeded a 7DADM of 20°C and 35% were significantly warmer than predicted, only 17% both exceeded the biological criterion and were significantly warmer than predicted. This filtering allowed us to identify locations where physical and biological impairment were most likely within the network and that would represent the highest management priorities. Although our approach lacks the precision of more comprehensive approaches, it provides a broader context for diagnosing impairment and is a useful means of identifying priorities for more detailed evaluations across broad and heterogeneous stream networks.

Nevada↗