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At least 19 recordsLinked to original sources

MTH5: An archive and exchangeable data format for magnetotelluric time series data

Magnetotellurics (MT) is a passive electromagnetic geophysical method that measures variations in subsurface electrical resistivity. MT data are collected in the time domain and processed in the frequency domain to produce estimates of a transfer function representing the Earth’s electrical structure. Unfortunately, the MT community lacks metadata and data standards for time series data. As the community grows and findability, accessibility, interoperability, and reuse of digital assets (FAIR) data principles are enforced by government and funding agencies, a standard is needed for time series data. Presented here is a hierarchical data format (MTH5) that is logically formatted to how MT data are collected. Open-source Python packages are also described to read, write, and manipulate MTH5 files. These include a package to deal with metadata ( mt_metadata ) based on standards developed by the Working Group for Magnetotelluric Data Handling and Software assembled by the Incorporated Research Institutions for Seismology (IRIS), and mth5 : a package to interact with MTH5 files that uses mt_metadata . Example code and workflows are presented.

Computers & Geosciences↗

Assessment of forest degradation in Vietnam using Landsat time series data

Landsat time series data were used to characterize forest degradation in Lam Dong Province, Vietnam. We conducted three types of image change analyses using Landsat time series data to characterize the land cover changes. Our analyses concentrated on the timeframe of 1973–2014, with much emphasis on the latter part of that range. We conducted a field trip through Lam Dong Province to develop a better understanding of the ground conditions of the region, during which we obtained many photographs of representative forest sites with Global Positioning System locations to assist us in our image interpretations. High-resolution Google Earth imagery and Landsat data of the region were used to validate results. In general, our analyses indicated that many land-use changes have occurred throughout Lam Dong Province, including gradual forest to non-forest transitions. Recent changes are most marked along the relatively narrow interfaces between agricultural and forest areas that occur towards the boundaries of the province. One important observation is that the most highly protected national reserves in the region have not changed much over the entire Landsat timeframe (1972–present). Spectral changes within these regions have not occurred at the same levels as those areas adjacent to the reserves.

Forests↗

Simple statistical models can be sufficient for testing hypotheses with population time series data

Time-series data offer wide-ranging opportunities to test hypotheses about the physical and biological factors that influence species abundances. Although sophisticated models have been developed and applied to analyze abundance time series, they require information about species detectability that is often unavailable. We propose that in many cases, simpler models are adequate for testing hypotheses. We consider three relatively simple regression models for time series, using simulated and empirical (fish and mammal) datasets. Model A is a conventional generalized linear model of abundance, model B adds a temporal autoregressive term, and model C uses an estimate of population growth rate as a response variable, with the option of including a term for density dependence. All models can be fit using Bayesian and non-Bayesian methods. Simulation results demonstrated that model C tended to have greater support for long-lived, lower-fecundity organisms (K life-history strategists), while model A, the simplest, tended to be supported for shorter-lived, high-fecundity organisms (r life-history strategists). Analysis of real-world fish and mammal datasets found that models A, B, and C each enjoyed support for at least some species, but sometimes yielded different insights. In particular, model C indicated effects of predictor variables that were not evident in analyses with models A and B. Bayesian and frequentist models yielded similar parameter estimates and performance. We conclude that relatively simple models are useful for testing hypotheses about the factors that influence abundance in time-series data, and can be appropriate choices for datasets that lack the information needed to fit more complicated models. When feasible, we advise fitting datasets with multiple models because they can provide complementary information.

Ecology and Evolution↗

waterData--An R package for retrieval, analysis, and anomaly calculation of daily hydrologic time series data, version 1.0

Hydrologic time series data and associated anomalies (multiple components of the original time series representing variability at longer-term and shorter-term time scales) are useful for modeling trends in hydrologic variables, such as streamflow, and for modeling water-quality constituents. An R package, called waterData, has been developed for importing daily hydrologic time series data from U.S. Geological Survey streamgages into the R programming environment. In addition to streamflow, data retrieval may include gage height and continuous physical property data, such as specific conductance, pH, water temperature, turbidity, and dissolved oxygen. The package allows for importing daily hydrologic data into R, plotting the data, fixing common data problems, summarizing the data, and the calculation and graphical presentation of anomalies.

Open-File Report↗

User Manual for the Data-Series Interface of the Gr Application Software

This manual describes the data-series interface for the Gr Application software. Basic tasks such as plotting, editing, manipulating, and printing data series are presented. The properties of the various types of data objects and graphical objects used within the application, and the relationships between them also are presented. Descriptions of compatible data-series file formats are provided.

Open-File Report↗

Assessing gap-filled Landsat land surface temperature time-series data using different observational datasets

Landsat Analysis Ready Data (ARD)-based time-series present challenges in monitoring surface urban heat islands (SUHI) due to rapid changes in land surface temperature (LST) compared to cloud-free satellite observations. This research investigates the use of a spatiotemporal gap-filling model as a feasible and cost-effective solution to produce Landsat time-series LST products with both high spatial resolution and temporal frequency. The study identified and filled Landsat ARD thermal times-series data gaps due to missing data, cloud and shadow effects, and data quality. The accuracy of Landsat gap-filled products was assessed using randomly selected clear observations of Landsat and uncertainty products from the gap-filling model and was evaluated using various existing temperature datasets, including climate data from NOAA Global Historical Climate Network station observations, Daily Surface Weather and Climatological Summaries (DAYMET), and LST including MODIS, VIIRS and ECOSTRESS. The result suggests that the gap-filled Landsat LST has significant correlations with existing datasets including field observation and remote sensing data derived from other sensors that have similar monthly and seasonal variation patterns. The uncertainty maps show spatial distributions of uncertainty for gap-filled pixels that have high or low uncertainties. The Landsat gap-filled time-series datasets can be used to measure annual, seasonal, or even monthly landscape thermal conditions, which are useful for SUHI and relevant research, and to perform multi-decade time-series LST change analysis under climate change conditions.

International Journal of Remote Sensing↗

Invertibility aware integration of static and time-series data: An application to lake temperature modeling

Accurate predictions of water temperature are the foundation for many decisions and regulations, with direct impacts on water quality, fishery yields, and power production. Building accurate broad-scale models for lake temperature prediction remains challenging in practice due to the variability in the data distribution across different lake systems monitored by static and time-series data. In this paper, to tackle the above challenges, we propose a novel machine learning based approach for integrating static and time-series data in deep recurrent models, which we call Invertibility-Aware-Long Short-Term Memory(IA-LSTM), and demonstrate its effectiveness in predicting lake temperature. Our proposed method integrates components of the Invertible Network and LSTM to better predict temperature profiles (forward modeling) and infer the static features (i.e., inverse modeling) that can eventually enhance the prediction when static variables are missing. We evaluate our method on predicting the temperature profile of 450 lakes in the Midwestern U.S. and report relative improvement of 4% to capture data heterogeneity and simultaneously outperform baseline predictions by 12% when static features are unavailable.

Conference Paper↗

Merging climate and multi-sensor time-series data in real-time drought monitoring across the U.S.A.

Droughts occur repeatedly in the United States resulting in billions of dollars of damage. Monitoring and reporting on drought conditions is a necessary function of government agencies at multiple levels. A team of Federal and university partners developed a drought decision- support tool with higher spatial resolution relative to traditional climate-based drought maps. The Vegetation Drought Response Index (VegDRI) indicates general canopy vegetation condition assimilation of climate, satellite, and biophysical data via geospatial modeling. In VegDRI, complementary drought-related data are merged to provide a comprehensive, detailed representation of drought stress on vegetation. Time-series data from daily polar-orbiting earth observing systems [Advanced Very High Resolution Radiometer (AVHRR) and Moderate Resolution Imaging Spectroradiometer (MODIS)] providing global measurements of land surface conditions are ingested into VegDRI. Inter-sensor compatibility is required to extend multi-sensor data records; thus, translations were developed using overlapping observations to create consistent, long-term data time series.

Conference Paper↗

Quantification of water-level variability effect on plant species populations using paleoecological and hydrological time series data

Soil cores provide valuable data on historical changes in vegetation and hydrologic conditions. Empirical models were developed to quantify the effect of meteorological and hydrologic forcing on plant species distributions over a 110-year period in Water Conservation Area 1 (WCA1) in the Florida Everglades, also known as the Arthur R. Marshall Loxahatchee National Wildlife Refuge. Empirical models that predict plant species distributions at sites within WCA1 were developed by linking temporally sparse seed bank data from soil cores with continuous multi-decadal daily meteorological and hydrologic time series data. The meteorological data included rainfall and maximum daily temperatures that spanned the entire study period of 110 years. The hydrologic data included stage data from two gages in WCA1 established in 1954. These stage data were hindcasted to be concurrent with the meteorological data by using correlation models that fit measured stages as a function of the meteorological parameters. The historical plant species data came from seven peat cores from WCA1. Different depths from each core were carbon-dated and assayed for relative percentages of 83 plant species using pollen counts. The oldest dates were more than 1,000 years old; however, only core data that overlapped the study period were used, for a total of 67 assays among the seven cores. Twenty-three of the species had ratios of at least 5 percent for one or more of the 67 assays, hereafter referred to as the "top23". Using the assays as input vectors, the top23 were grouped using the k-means clustering into four plant classes that represented the extent to which the various species have historically appeared together. This reduced the modeling problem to one of predicting the relative ratios of the four plant classes from the hindcasted stage time-series data. A separate empirical model was developed for each class using a multi-layer perceptron artificial neural network, which provides multivariate, nonlinear curve fitting. The models predicted the relative ratios of the classes, and the sums of the predictions are near 1. The coefficient of determination (R2) of the models varied from 0.87 to 0.96, indicating that the relative ratios of the plant classes are predictable, and therefore controllable, from stage forcing. Similar soil cores are available for the Coastal Plain of North Carolina and are planned for the Congaree National Park in South Carolina.

Florida↗

Documentation for HYDMOD; a program for extracting and processing time-series data from the U.S. Geological Survey's modular three-dimensional finite-difference ground-water flow model

This report presents a FORTRAN computer program that generates simulated time-series data as output from the U.S. Geological Survey Modular Finite-Difference Ground-Water Flow Model at user-specified point locations or a collection of points that compose a profile through the modeled region. The program can save time-series data at user-specified locations for simulated water levels, drawdown, critical head, compaction, subsidence, streamflow, streamflow stage, and streamflow leakage. A set of locations also can be specified to create time-series profiles through the model. These data can be used to establish the performance of the model and can help with model calibration and other forms of flow-system and water-resource analysis.

Open-File Report↗

Downsizer - A Graphical User Interface-Based Application for Browsing, Acquiring, and Formatting Time-Series Data for Hydrologic Modeling

The U.S. Geological Survey Downsizer is a computer application that selects, downloads, verifies, and formats station-based time-series data for environmental-resource models, particularly the Precipitation-Runoff Modeling System. Downsizer implements the client-server software architecture. The client presents a map-based, graphical user interface that is intuitive to modelers; the server provides streamflow and climate time-series data from over 40,000 measurement stations across the United States. This report is the Downsizer user's manual and provides (1) an overview of the software design, (2) installation instructions, (3) a description of the graphical user interface, (4) a description of selected output files, and (5) troubleshooting information.

Open-File Report↗

Changes in agricultural cropland areas between a water-surplus year and a water-deficit year impacting food security, determined using MODIS 250 m time-series data and spectral matching techniques, in the Krishna river basin (India)

The objective of this study was to investigate the changes in cropland areas as a result of water availability using Moderate Resolution Imaging Spectroradiometer (MODIS) 250 m time-series data and spectral matching techniques (SMTs). The study was conducted in the Krishna River basin in India, a very large river basin with an area of 265 752 km 2 (26 575 200 ha), comparing a water-surplus year (2000–2001) and a water-deficit year (2002–2003). The MODIS 250 m time-series data and SMTs were found ideal for agricultural cropland change detection over large areas and provided fuzzy classification accuracies of 61–100% for various land‐use classes and 61–81% for the rain-fed and irrigated classes. The most mixing change occurred between rain-fed cropland areas and informally irrigated (e.g. groundwater and small reservoir) areas. Hence separation of these two classes was the most difficult. The MODIS 250 m-derived irrigated cropland areas for the districts were highly correlated with the Indian Bureau of Statistics data, with R 2 -values between 0.82 and 0.86. The change in the net area irrigated was modest, with an irrigated area of 8 669 881 ha during the water-surplus year, as compared with 7 718 900 ha during the water-deficit year. However, this is quite misleading as most of the major changes occurred in cropping intensity, such as changing from higher intensity to lower intensity (e.g. from double crop to single crop). The changes in cropping intensity of the agricultural cropland areas that took place in the water-deficit year (2002–2003) when compared with the water-surplus year (2000–2001) in the Krishna basin were: (a) 1 078 564 ha changed from double crop to single crop, (b) 1 461 177 ha changed from continuous crop to single crop, (c) 704 172 ha changed from irrigated single crop to fallow and (d) 1 314 522 ha changed from minor irrigation (e.g. tanks, small reservoirs) to rain-fed. These are highly significant changes that will have strong impact on food security. Such changes may be expected all over the world in a changing climate.

International Journal of Remote Sensing↗

Evaluating consumptive and nonconsumptive predator effects on prey density using field times series data

Determining the degree to which predation affects prey abundance in natural communities constitutes a key goal of ecological research. Predators can affect prey through both consumptive effects (CEs) and nonconsumptive effects (NCEs), although the contributions of each mechanism to the density of prey populations remain largely hypothetical in most systems. Common statistical methods applied to time series data cannot elucidate the mechanisms responsible for hypothesized predator effects on prey density (e.g., differentiate CEs from NCEs), nor provide parameters for predictive models. State space models (SSMs) applied to time series data offer a way to meet these goals. Here, we employ SSMs to assess effects of an invasive predatory zooplankter, Bythotrephes longimanus, on an important prey species, Daphnia mendotae, in Lake Michigan. We fit mechanistic models in a SSM framework to seasonal time series (1994-2012) using a recently developed, maximum likelihood-based optimization method, iterated filtering, which can overcome challenges in ecological data (e.g. nonlinearities, measurement error, and irregular sampling intervals). Our results indicate that B. longimanus strongly influences D. mendotae dynamics, with mean annual peak densities of B. longimanus observed in Lake Michigan estimated to cause a 61% reduction in D. mendotae population growth rate and a 59% reduction in peak biomass density. Further, the observed B. longimanus effect is most consistent with an NCE via reduced birth rates. The SSM approach also provided estimates for key biological parameters (e.g., demographic rates) and the contribution of dynamic stochasticity and measurement error. Our study therefore provides evidence derived directly from survey data that the invasive zooplankter B. longimanus is affecting zooplankton demographics and offer parameter estimates needed to inform predictive models that explore the effect of B. longimanus under different scenarios such as climate change.

Ecology↗

An evaluation of the accuracy of modeled and computed streamflow time-series data for the Ohio River at Hannibal Lock and Dam and at a location upstream from Sardis, Ohio

Between July 2013 and June 2014, the U.S. Geological Survey (USGS) made 10 streamflow measurements on the Ohio River about 1.5 miles (mi) downstream from the Hannibal Lock and Dam (near Hannibal, Ohio) and 11 streamflow measurements near the USGS Sardis gage (station number 03114306) located approximately 2.4 mi upstream from Sardis, Ohio. The measurement results were used to assess the accuracy of modeled or computed instantaneous streamflow time series created and supplied by the USGS, U.S. Army Corps of Engineers (USACE), and National Weather Service (NWS) for the Ohio River at Hannibal Lock and Dam and (or) at the USGS streamgage. Hydraulic or hydrologic models were used to create the modeled time series; index-velocity methods or gate-opening ratings coupled with hydropower operation data were used to create the computed time series. The time step of the various instantaneous streamflow time series ranged from 15 minutes to 24 hours (once-daily values at 12:00 Coordinated Universal Time [UTC]). The 15-minute time-series data, computed by the USGS for the Sardis gage, also were downsampled to 1-hour and 24-hour time steps to permit more direct comparisons with other streamflow time series. To facilitate comparisons between measurement results and time-series data, streamflows corresponding to the times of the streamflow measurements were computed from the time-series data by time-based linear interpolation. Prior to doing interpolations, measurement times for the Hannibal Lock and Dam location were adjusted for traveltime to account for the fact that the streamflow measurements were made about 1.5 mi downstream from the location corresponding to the modeled/computed time-series data. Measured and interpolated streamflows were tabulated along with residuals (the difference between measured and interpolated streamflows) and selected summary statistics. Overall, streamflows interpolated from the USGS computed 15-minute time-series data (hereafter referred to as the USGS 15-minute time-series data) had the smallest root-mean-square error (RMSE) (3,939 cubic feet per second [ft 3 /s]) and the second smallest mean absolute residual (2,636 ft 3 /s), whereas streamflows interpolated from the USACE 12 UTC time series had the largest RMSE (14,590 ft 3 /s) and the largest mean absolute residual (10,800 ft 3 /s). The larger RMSEs for streamflows interpolated from the USACE 12 UTC time series likely resulted in part from the coarser time step of that time series. Streamflows interpolated from the USGS downsampled 1-hour time series had the second smallest RMSE (4,025 ft 3 /s) and the smallest mean absolute residual (2,600 ft 3 /s). Somewhat surprisingly, streamflows interpolated from the NWS 6-hour model time series had the third smallest RMSE (4,483 ft 3 /s) and mean absolute residual (4,050 ft 3 /s) in spite of being determined from a time series with a coarser time step than the USACE 1-hour modeled and computed time series. Measured streamflows at the Sardis gage and at the Hannibal Lock and Dam measurement location were plotted versus residuals (expressed as a percentage of the measured streamflows) of corresponding interpolated time-series streamflow values. Results for each of the time series exhibited some anomaly, possibly indicating the need and (or) potential for improvement in the streamflow computational/modeling processes. Streamflow hydrographs were plotted for modeled/computed time series for the Ohio River near the USGS Sardis gage and the Ohio River at the Hannibal Lock and Dam. In general, the time series at these two locations compared well. Some notable differences include the exclusive presence of short periods of negative streamflows in the USGS 15-minute time-series data for the gage on the Ohio River above Sardis, Ohio, and the occurrence of several peak streamflows in the USACE gate/hydropower time series for the Hannibal Lock and Dam that were appreciably larger than corresponding peaks in the other time series, including those modeled/computed for the downstream Sardis gage

Ohio↗

Southern Salish Sea Habitat Map Series data catalog

In 2010, the U.S. Environmental Protection Agency, Region 10 initiated the Puget Sound Scientific Studies and Technical Investigations Assistance Program, which was designed to support research for implementing the Puget Sound Action Agenda. The Action Agenda was created because Puget Sound was designated as one of 28 estuaries of National Significance under section 320 of the Clean Water Act, and its overall goal is to restore the environment of the Puget Sound Estuary by 2020. The Southern Salish Sea Mapping Project was funded through the Assistance Program request for proposal process which also supports a large number of coastal-zone- and ocean-management issues, and includes the recommendations of the Marine Protected Areas Work Group to the Washington State Legislature. These recommendations include a Puget Sound and coast-wide marine conservation needs assessment, gap analysis of existing Marine Protected Areas and recommendations for action. Four areas with recently acquired National Ocean Service hydrographic data are included in the Southern Salish Sea Habitat Map Series (fig. 1), each to be published individually as USGS Open File Reports at a scale of 1:40,000. The map products display seafloor geoforms, substrate, and biotopes using the Coastal and Marine Ecological Classification Standard. This data catalog contains much of the data used to prepare the SIMs in the Southern Salish Sea Habitat Map Series. Other data that were used to prepare the maps were compiled from previously published sources (for example, sediment samples and seismic reflection profiles) and are not included in this data series.

Washington↗

Chesapeake bay watershed land cover data series

To better understand how the land is changing and to relate those changes to water quality trends, the USGS EGSC funded the production of a Chesapeake Bay Watershed Land Cover Data Series (CBLCD) representing four dates: 1984, 1992, 2001, and 2006. EGSC will publish land change forecasts based on observed trends in the CBLCD over the coming year. They are in the process of interpreting and publishing statistics on the extent, type and patterns of land cover change for 1984-2006 in the Bay watershed, major tributaries and counties.

Chesapeake Bay Watershed↗

California State Waters Map series data catalog

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California's State Waters. The CSMP approach is to create highly detailed seafloor maps and associated data layers through the collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. CSMP has divided coastal California into 110 map blocks (fig. 1), each to be published individually as USGS Scientific Investigations Maps (SIMs) at a scale of 1:24,000. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the seafloor geology and shallow (to about 100 m) subsurface geology. This CSMP data catalog contains much of the data used to prepare the SIMs in the California State Waters Map Series. Other data that were used to prepare the maps were compiled from previously published sources (for example, onshore geology) and, thus, are not included herein.

California↗

Hydrogeologic applications for historical records and images from rock samples collected at the Nevada National Security Site and vicinity, Nye County, Nevada - A supplement to Data Series 297

Rock samples have been collected, analyzed, and interpreted from drilling and mining operations at the Nevada National Security Site for over one-half of a century. Records containing geologic and hydrologic analyses and interpretations have been compiled into a series of databases. Rock samples have been photographed and thin sections scanned. Records and images are preserved and available for public viewing and downloading at the U.S. Geological Survey ScienceBase, Mercury Core Library and Data Center Web site at https://www.sciencebase.gov/mercury/ and documented in U.S. Geological Survey Data Series 297. Example applications of these data and images are provided in this report.

Nevada↗