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USGS2002

Proposal for adaptive management to conserve biotic integrity in a regulated segment of the Tallapoosa River, Alabama, U.S.A

Conserving river biota will require innovative approaches that foster and utilize scientific understanding of ecosystem responses to alternative river-management scenarios. We describe ecological and societal issues involved in flow management of a section of the Tallapoosa River (Alabama, U.S.A.) in which a species-rich native fauna is adversely affected by flow alteration by an upstream hydropower dam. We hypothesize that depleted Iow flows, flow instability and thermal alteration resulting from pulsed flow releases at the hydropower dam are most responsible for changes in the Tallapoosa River biota. However, existing data are insufficient to prescribe with certainty minimum flow levels or the frequency and duration of stable flow periods that would be necessary or sufficient to protect riverine biotic integrity. Rather than negotiate a specific change in the flow regime, we propose that stakeholders--including management agencies, the power utility, and river advocates--engage in a process of adaptive-flow management. This process would require that stakeholders (1) develop and agree to management objectives; (2) model hypothesized relations between dam operations and management objectives; (3) implement a change in dam operations; and (4) evaluate biological responses and other stakeholder benefits through an externally reviewed monitoring program. Models would be updated with monitoring data and stakeholders would agree to further modify flow regimes as necessary to achieve management objectives. A primary obstacle to adaptive management will be a perceived uncertainty of future costs for the power utility and other stakeholders. However, an adaptive, iterative approach offers the best opportunity for improving flow regimes for native biota while gaining information critical to guiding management decisions in other flow-regulated rivers.

Conservation Biology↗

USGS2005

Status and conservation of the fish fauna of the Alabama River system

The Alabama River system, comprising the Alabama, Coosa, and Tallapoosa subsystems, forms the eastern portion of the Mobile River drainage. Physiographic diversity and geologic history have fostered development in the Alabama River system of globally significant levels of aquatic faunal diversity and endemism. At least 184 fishes are native to the system, including at least 33 endemic species. During the past century, dam construction for hydropower generation and navigation resulted in 16 reservoirs that inundate 44% of the length of the Alabama River system main stems. This extensive physical and hydrologic alteration has affected the fish fauna in three major ways. Diadromous and migratory species have declined precipitously. Fish assemblages persisting downstream from large main-stem dams have been simplified by loss of species unable to cope with altered flow and water quality regimes. Fish populations persisting in the headwaters and in tributaries to the mainstem reservoirs are now isolated and subjected to effects of physical and chemical habitat degradation. Ten fishes in the Alabama River system (including seven endemic species) are federally listed as threatened or endangered. Regional experts consider at least 28 additional species to be vulnerable, threatened, or endangered with extinction. Conserving the Alabama River system fish fauna will require innovative dam management, protection of streams from effects of urbanization and water supply development, and control of alien species dispersal. Failure to manage aggressively for integrity of remaining unimpounded portions of the Alabama River system will result in reduced quality of natural resources for future generations, continued assemblage simplification, and species extinction.

Book chapter↗

USGS2005

Status and conservation of the fish fauna of the Alabama River system

American Fisheries Society Symposium↗

USGS1958

Chemicals and wildlife

Short paper that reviews some of the facts about effects of insecticides on wildlife and states principles that should be followed for maximum safety in treatment. These principles include minimal doses, good ground-to-plane control to avoid overdoses, and least possible pollution of water areas.

Alabama Conservation↗

USGS1952

Wildlife research: Or disaster!

No abstract available.

Alabama Conservation↗

USGS2020

Decision analysis of restoration actions for faunal conservation and other stakeholder values: Dauphin Island, Alabama

Dauphin Island is a barrier island located in the northern Gulf of Mexico and serves as the only barrier island providing protection to much of the State of Alabama’s coastal natural resources. The ecosystem spans over 3,500 acres of barrier island habitat including, beach, dune, overwash fans, intertidal wetlands, maritime forest and freshwater ponds. In addition, Dauphin Island provides protection to approximately one-third of the Mississippi Sound estuarine habitats in its lee including oyster reefs, mainland marshes and seagrasses. The habitat supports a variety of species including at least 347 species of birds, some of which are Federally or State listed species that either pass through or reside on the island. The island enhances the region’s recreational and commercial fishery habitat through maintenance and protection of water quality in the sound and adjacent nearshore habitats. Dauphin Island also serves as the location for cultural resources, the United States Air Force’s (USAF) early warning radar station, the State’s marine education facilities, infrastructure for the oil and gas industry, and a vibrant tourism economy. Consequently, anthropogenic actions (e.g., structural changes) and externally driven natural factors (e.g., storms and sea level rise) that impact Dauphin Island could affect both the conservation and economic value of the island.

Alabama↗

USGS2010

Mussel remains from prehistoric salt works, clarke county, Alabama

Archaeological research at salt springs in Clarke County, AL (Tombigbee River drainage), documented bivalve mollusk exploitation by late prehistoric American Indians. A total of 582 valves representing 19 species of freshwater mussels (Unionidae) and an estuarine clam (Mactridae) from the Lower Salt Works Site (ca. A.D. 900-1550) and 41 valve fragments representing 6 mussel species from the Stimpson Site (ca. A.D. 1200-1550) were documented. The Lower Salt Works fauna was dominated numerically by Fusconaia ebena and Quadrula asperata, the dominant species reported during recent local surveys. The mussel species represented are known from medium to large streams in sand and gravel habitats and include four federally protected species and other species of conservation concern in Alabama. Results offer comparative data for other archaeological and ecological studies in the region.

Southeastern Naturalist↗

USGS2020

Strategic habitat conservation for beach mice: Estimating management scenario efficiencies

The Perdido Key beach mouse ( Peromyscus polionotus trissyllepsis ), Choctawhatchee beach mouse ( P. p. allophrys ), and St. Andrew beach mouse ( P. p. peninsularis ) are 3 federally endangered subspecies that inhabit coastal dunes of Alabama and Florida, USA. Conservation opportunities for these subspecies are limited and costly. Consequently, well‐targeted efforts are required to achieve their downlisting criteria. To aid the development of targeted management scenarios that are designed to achieve downlisting criteria, we developed a Bayesian network model that uses habitat characteristics to predict the probability of beach mouse presence at a 30‐m resolution across a portion of the Florida Panhandle. We then designed alternative management scenarios for a variety of habitat conditions for coastal dunes. Finally, we estimated how much area is needed to achieve the established downlisting criterion (i.e., habitat objective) and the amount of effort needed to achieve the habitat objective (i.e., management efficiency). The results suggest that after 7 years of post‐storm recolonization, habitat objectives were met for Perdido Key (within its Florida critical habitat) and Choctawhatchee beach mice. The St. Andrew beach mouse required 5.14 km 2 of additional critical habitat to be protected and occupied. The St. Andrew beach mouse habitat objective might be achieved by first restoring protected critical habitat to good dune conditions and then protecting or restoring the unprotected critical habitat with the highest predicted probability of beach mouse presence. This scenario provided a 28% increase in management efficiency compared to a scenario that randomly protected or restored undeveloped unprotected critical habitat. In total, when coupled with established downlisting criteria, these quantitative and spatial decision support tools could provide insight into how much habitat is available, how much more is needed, and targeted conservation or restoration efforts that might efficiently achieve habitat objectives.

Alabama, Florida↗

USGS2022

Thermal performance of the electron transport system Complex III in seven Alabama fishes

Management of fish populations for conservation in thermally variable systems requires an understanding of the fish's underlying physiology and responses to thermal stress. Physiological research at the organismal level provides information on the overall effects of stressors such as extreme temperature fluctuations. While experiments with whole organisms provide information as to the overall effects of temperature fluctuations, biochemical assays of thermal stress provide direct results of exposure that are both sensitive and specific. Electron transport system (ETS; Complex III) assays quantify a rate-limiting step of respiratory enzymes. Parameters that can be estimated via this approach include optimum thermal temperature ( T opt ) and optimal breadth of thermal performance ( T breadth ), which can both be related to organismal-level temperature thresholds. We exposed enzymes of seven fish species (native fish chosen to represent a typical community in Alabama streams) to temperatures in the range 11–44°C. The resultant enzymatic thermal performance curves showed that T opt , the lower temperature for enzyme optimal thermal performance ( T low ), the upper temperature for enzyme optimal thermal performance ( T up ), and T breadth differed among species. Relationships between enzymatic activity and temperature for all fish followed a pattern of steadily increasing enzyme activity to T opt before gradually decreasing with increasing temperature. A comparison of our enzyme optimum and upper-temperature limit results versus published critical thermal maxima values supports that ETS Complex III assays may be useful for assessing organismal-level thermal tolerance.

JEZ-A: Ecological and Integrative Physiology↗

USGS2015

The current status of mapping karst areas and availability of public sinkhole-risk resources in karst terrains of the United States

Subsidence from sinkhole collapse is a common occurrence in areas underlain by water-soluble rocks such as carbonate and evaporite rocks, typical of karst terrain. Almost all 50 States within the United States (excluding Delaware and Rhode Island) have karst areas, with sinkhole damage highest in Florida, Texas, Alabama, Missouri, Kentucky, Tennessee, and Pennsylvania. A conservative estimate of losses to all types of ground subsidence was $125 million per year in 1997. This estimate may now be low, as review of cost reports from the last 15 years indicates that the cost of karst collapses in the United States averages more than $300 million per year. Knowing when a catastrophic event will occur is not possible; however, understanding where such occurrences are likely is possible. The US Geological Survey has developed and maintains national-scale maps of karst areas and areas prone to sinkhole formation. Several States provide additional resources for their citizens; Alabama, Colorado, Florida, Indiana, Iowa, Kentucky, Minnesota, Missouri, Ohio, and Pennsylvania maintain databases of sinkholes or karst features, with Florida, Kentucky, Missouri, and Ohio providing sinkhole reporting mechanisms for the public.

Hydrogeology Journal↗

USGS2007

Population demographics of Hiodon tergisus (Mooneye) in the lower Tallapoosa River

We describe age structure, growth, and fecundity of Hiodon tergisus (Mooneye) from the lower Tallapoosa River, AL. Mooneye (N = 49, 214-316 mm total length, 79-284 g) were aged using otoliths, and a von Bertalanffy growth model was derived for the species (L??? = 316, K = 0.285, to = -0.7). Growth rates of Mooneye differed between the Tallapoosa River population and a previously studied population from the northern extent of the species' range (Assiniboine River, MB, Canada). In addition, fecundity of Mooneye from the Tallapoosa River was similar to the northern population, ranging from 5321 to 7432 eggs per female. Because the species is declining throughout its range in Alabama, we recommend that managers use our findings in conservation efforts. Future studies should investigate how hydrology influences the spawning success and early growth and development of Mooneye in regulated systems. More information about this species is needed regarding their early life history, including early growth, survival, and habitat use.

Southeastern Naturalist↗

USGS2016

Decision analysis for habitat conservation of an endangered, range-limited salamander

Many species of conservation concern are habitat limited and often a major focus of management for these species is habitat acquisition and/or restoration. Deciding the location of habitat restoration or acquisition to best benefit a protected species can be a complicated subject with competing management objectives, ecological uncertainties and stochasticity. Structured decision making (SDM) could be a useful approach for explicitly incorporating those complexities while still working toward species conservation and/or recovery. We applied an SDM approach to Red Hills salamander Phaeognathus hubrichti habitat conservation decision making. Phaeognathus hubrichti is a severely range-limited endemic species in south central Alabama and has highly specific habitat requirements. Many known populations live on private lands and the primary mode of habitat protection is habitat conservation planning, but such plans are non-binding and not permanent. Working with stakeholders, we developed an objectives hierarchy linking land acquisition or protection actions to fundamental objectives. We built a model to assess and compare the quality of the habitat in the known range of P. hubrichti . Our model evaluated key habitat attributes of 5814 pixels of 1 km 2 each and ranked the pixels from best to worst with respect to P. hubrichti habitat requirements. Our results are a spatially explicit valuation of each pixel, with respect to its probable benefit to P. hubrichti populations. The results of this effort will be used to rank pixels from most to least beneficial, then identify land owners in the most useful areas for salamanders who are willing to sell or enter into a permanent easement agreement.

Alabama↗

USGS2009

Assessing rates of forest change and fragmentation in Alabama, USA, using the vegetation change tracker model

Forest change is of great concern for land use decision makers and conservation communities. Quantitative and spatial forest change information is critical for addressing many pressing issues, including global climate change, carbon budgets, and sustainability. In this study, our analysis focuses on the differences in geospatial patterns and their changes between federal forests and nonfederal forests in Alabama over the time period 1987–2005, by interpreting 163 Landsat Thematic Mapper (TM) scenes using a vegetation change tracker (VCT) model. Our analysis revealed that for the most part of 1990 s and between 2000 and 2005, Alabama lost about 2% of its forest on an annual basis due to disturbances, but much of the losses were balanced by forest regeneration from previous disturbances. The disturbance maps revealed that federal forests were reasonably well protected, with the fragmentation remaining relatively stable over time. In contrast, nonfederal forests, which are predominant in area share (about 95%), were heavily disturbed, clearly demonstrating decreasing levels of fragmentation during the time period 1987–1993 giving way to a subsequent accelerating fragmentation during the time period 1994–2005. Additionally, the identification of the statistical relationships between forest fragmentation status and forest loss rate and forest net change rate in relation to land ownership implied the distinct differences in forest cutting rate and cutting patterns between federal forests and nonfederal forests. The forest spatial change information derived from the model has provided valuable insights regarding regional forest management practices and disturbance regimes, which are closely associated with regional economics and environmental concerns.

Forest Ecology and Management↗

USGS2003

Conservation genetics of North American freshwater mussels Amblema and Megalonaias

Freshwater bivalves are among the most endangered groups of organisms in North America. Efforts to protect the declining mussel fauna are confounded by ambiguities associated with recognition of distinct evolutionary entities or species. This, in part, is due to the paucity of reliable morphological characters for differentiating taxa. We have employed allozymes and DNA sequence data to search for diagnosably distinct evolutionary entities within two problematic genera of unionid mussels, Amblema and Megalonaias. Within the genus Amblema three species are recognized based on our DNA sequence data for the mitochondrial 16S rRNA and allozyme data (Amblema neislerii, A. plicata, and A. elliotti). Only one taxonomically distinct entity is recognized within the genus Megalonaias—M. nervosa. Megalonaias boykiniana of the Apalachicolan Region is not diagnosable and does not warrant specific taxonomic status. Interestingly, Megalonaias from west of the Mississippi River, including the Mississippi, exhibited an allozyme and mtDNA haplotype frequency shift suggestive of an east-west dichotomy. The results of this study eliminate one subspecies of Amblema and increase the range of A. plicata. This should not affect the conservation status of “currently stable” assigned to A. plicata by Williams et al. (1993). The conservation status of A. elliotti needs to be reexamined because its distribution appears to be limited to the Coosa River System in Alabama and Georgia.

Conservation Biology↗

USGS2020

Quantifying harvestable fish and crustacean production and associated economic values provided by oyster reefs

Quantifying ecosystem services can provide information to justify conservation and restoration decisions so as to allocate limited resources effectively. Consequently, decision makers and public typically ask for simple and understandable information with confidence regarding the availability of the services and the probable economic value. Here, we compiled published information on density enhancement and species life-history information to quantify fish and crustacean production and its uncertainty associated with the current extent of oyster ( Crassostrea virginica ) reefs in Mobile Bay, Alabama. We applied Alabama fishing size limits as a cutoff to exclude the production of non-harvestable size individuals. Fishery landing (2005–2015) and Willingness-To-Pay information were used to quantify the economic benefit of the harvestable production enhancement (commercial and recreational production). Sixteen species were found to be production-enhanced in the bay with a mean of 354 ± 182 g m −2 year −1 , of which 170 ± 112 g m −2 year −1 was economically quantifiable based on their harvestable production and landing information. The mean economic value was $509,000 year −1 in direct economic value for commercial fishers and $19.59 million year −1 estimated by the willingnesstopay value from recreational anglers. The results demonstrated a substantial positive economic benefit of ecosystem services from oyster reefs associated with fishery production in Mobile Bay, Alabama. The method could be applied elsewhere to estimate the economic return from the investment of conserving and restoring of similar structured habitats.

Alabama↗

USGS2016

Predicting the occurrence of cave-inhabiting fauna based on features of the earth surface environment

One of the most challenging fauna to study in situ is the obligate cave fauna because of the difficulty of sampling. Cave-limited species display patchy and restricted distributions, but it is often unclear whether the observed distribution is a sampling artifact or a true restriction in range. Further, the drivers of the distribution could be local environmental conditions, such as cave humidity, or they could be associated with surface features that are surrogates for cave conditions. If surface features can be used to predict the distribution of important cave taxa, then conservation management is more easily obtained. We examined the hypothesis that the presence of major faunal groups of cave obligate species could be predicted based on features of the earth surface. Georeferenced records of cave obligate amphipods, crayfish, fish, isopods, beetles, millipedes, pseudoscorpions, spiders, and springtails within the area of Appalachian Landscape Conservation Cooperative in the eastern United States (Illinois to Virginia and New York to Alabama) were assigned to 20 x 20 km grid cells. Habitat suitability for these faunal groups was modeled using logistic regression with twenty predictor variables within each grid cell, such as percent karst, soil features, temperature, precipitation, and elevation. Models successfully predicted the presence of a group greater than 65% of the time (mean = 88%) for the presence of single grid cell endemics, and for all faunal groups except pseudoscorpions. The most common predictor variables were latitude, percent karst, and the standard deviation of the Topographic Position Index (TPI), a measure of landscape rugosity within each grid cell. The overall success of these models points to a number of important connections between the surface and cave environments, and some of these, especially soil features and topographic variability, suggest new research directions. These models should prove to be useful tools in predicting the presence of species in understudied areas.

Appalachian Landscape Conservation Cooperative↗

USGS2014

Comprehensive framework for ecological assessment of the Migratory Bird Habitat Initiative following the Deepwater Horizon oil spill

Following the Deepwater Horizon oil spill in the Gulf of Mexico in April 2010, the USDA Natural Resources Conservation Service (NRCS) established and funded the Migratory Bird Habitat Initiative (MBHI), with the goal of improving and increasing wetland habitats on private lands to benefit wintering and migrating waterbirds displaced from oil-impacted coastal wetlands. The NRCS and conservation partners provided financial and technical assistance to landowners and managers of sites enrolled in various conservation easement programs, and incorporated approximately 190,000 ha of wetlands and agricultural lands in the Mississippi Alluvial Valley (MAV) and Gulf Coast regions in the MBHI. In fall 2010, the NRCS worked with scientists and graduate students from three universities and various conservation agencies to design and implement landscape-scale evaluations of (1) the use of MBHI-managed wetlands and comparable non-MBHI wetlands by Charadriiformes (shorebirds), Anseriformes (waterfowl), and other waterbirds; and (2) the relative effectiveness of different MBHI practices for providing habitat and food resources for migrating, resident, and wintering waterbirds. In this paper, we describe the scientific framework designed to evaluate the MBHI in improving waterbird habitats on private lands in the MAV, the Gulf Coast Prairies in Louisiana and Texas, and Gulf coastal wetlands of Mississippi and Alabama. The results of our evaluation will enhance our understanding of the influence of MBHI, other Farm Bill Conservation Initiative managed lands (e.g., Wetland Reserve Program), and selected agricultural working lands (e.g., Oryza sativa L. [Rice] fields in southern Louisiana and Texas) on wintering and migrating waterbirds. A proactive approach that uses science to evaluate governmental conservation programs is relevant and can inform development of meaningful public policy that likely will be needed for effective delivery of future conservation programs and to justify financial incentives paid to landowners to apply best management practices.

Southeastern Naturalist↗

USGS2015

Spotted bass Micropterus punctulatus (Rafinesque 1819)

Three subspecies of Spotted Bass Micropterus punctulatus were historically recognized: the smaller Northern Spotted Bass M. p. punctulatus , the larger, longer-lived Alabama Spotted Bass M. p. henshalli , and the now invalidated Wichita Spotted Bass M. p. wichitae (Bailey and Hubbs 1940; Cofer 1995; Warren 2009; Rider and Maceina 2015, this volume). The subspecific status has been examined over the past decade as advanced genetic analyses have been developed (e.g., Kassler et al. 2002; Baker et al. 2008; Tringali et al. 2015, this volume). The American Fisheries Society has recently changed the designation of the Alabama Spotted Bass to a separate species, Alabama Bass M. henshalli (Page et al. 2013). The remainder of this paper will discuss the biology and conservation of only Spotted Bass. Both species have been observed to hybridize with other Micropterus spp. (Koppelman 1994; Pierce and Van Den Avyle 1997; Barwick et al. 2006).

American Fisheries Society Symposium↗