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Integrated hydrologic modeling of the Salinas River, California, for sustainable water management

The Salinas River is the largest river in California’s Central Coast region. Groundwater resources of the Salinas River basin are used to meet water supply needs, including crop irrigation and municipal water supply. Two large multipurpose reservoirs also supply irrigation and municipal water uses. Historical imbalances between supply and demand have resulted in sinking groundwater levels, seawater intrusion, regulatory actions on pumping, adjudication, and requirements for minimum in-stream fish flows. Present needs include finding replacement water supplies and improving watershed management to comply with legal mandates, adapt to future climate variability and landuse conversions, and improve environmental conditions. The Salinas Valley Integrated Hydrologic Model (SVIHM) was developed to help water managers evaluate and adjust to projected impacts on water supplies and demands in the Salinas Valley watershed caused by changes in land use, population, and climate. The SVIHM includes four modeling components: (1) the Basin Characterization Model (BCM), (2) the Hydrologic Simulation Program – FORTRAN (HSPF), (3) MODFLOW - One Water Hydrologic Model (MF-OWHM), and (4) the Surface Water Operations (SWO) package. The BCM and HSPF components compose the Salinas Valley Watershed Model (SVWM). The 4,530 square-mile (mi2) SVWM domain encompasses the entire Salinas River watershed, as well as coastal drainages adjacent to the Salinas River outflow, and includes two separate and connected HSPF model domains, the 2,540 mi2 upper Salinas River and the 1,990 mi2 lower Salinas River models. SVWM (1) simulates the water budget for the entire Salinas River basin containing both the SVIHM domain as well as the mountainous terrain of the tributary headwater areas not included in the SVIHM; and (2) was used to develop the 148 boundary inflows for the SVIHM. Simulated evapotranspiration (ET) is the largest component of the water budget after precipitation, with a 71-year average basin-wide ET of 13.9 in/yr, compared to the basin-wide average precipitation of 18.4 in/yr. Simulated ET ranges from 15 to 29 in/yr along the western side of the SVWM to less than 10 in/yr throughout the valley floor and in the southeast part of the Salinas River watershed. The simulated total 71-year average inflow to the SVIHM was 890 ft3/sec (about 640,000 acre-feet per year), with the highest average inflow of 270 ft3/sec simulated for the Nacimiento River; whereas, the simulated 71-year average streamflow at the mouth of the Salinas River was only about 190 ft3/sec, indicating that most of the streamflow generated in the Salinas River basin is lost to channel seepage. The lack of sustained baseflow causes streamflow to be highly sensitive to the temporal variability in precipitation, especially during the drier periods, and this increases the importance of developing adequate reservoir management, flow augmentation, and conjunctive water use scenarios for potential future drought periods and potentially increased temporal variability in precipitation.

California↗

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River Fall Chinook Salmon ESU: January 2019 - December 2019

The portion of the Snake River fall Chinook salmon Oncorhynchus tshawytscha evolutionary significant unit (ESU) that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 19922019 in association with U.S. Endangered Species Act recovery efforts and other federally mandated actions. This annual report focuses on (1) numeric and habitat use responses by natural- and hatchery-origin spawners, (2) phenotypic and numeric responses by natural-origin juveniles, and (3) use of a small unmanned aerial system (sUAS) to search for fall Chinook salmon redds and carcasses. Spawners have located and used most of the available spawning habitat and that habitat is gradually approaching redd capacity. Timing of spawning and fry emergence have been relatively stable, but effects of density dependence are evident in juvenile life stages. Apparent abundance of juvenile fall Chinook salmon has increased and we noted the following responses: parr dispersal from riverine rearing habitat into Lower Granite Reservoir has become earlier; growth rate (g/d) and dispersal size of parr declined; and passage timing of smolts from the two Snake River reaches has become earlier and downstream movement rate faster. These findings coupled with stock-recruitment analyses presented in this report provide evidence for density-dependence in the Snake River reaches and in Lower Granite Reservoir that was influenced by the expansion of the recovery program. The long-term goal is to use this information in a comprehensive modeling effort to conduct action-effectiveness and uncertainty research and to inform Fish Population, Hydrosystem, Harvest, Hatchery, and Predation and Invasive Species Management Research, Monitoring, and Evaluation (RM&E) progams. In 2019, the U.S. Geological Survey (USGS) shifted survey efforts in the Snake River toward deepwater redd searches and fish collection for parentage-based tagging (PBT) analyses because all unmanned aerial system (UAS) activities were suspended by the Department of the Interior two weeks into the spawning season. We counted 81 deepwater redds at 17 of the 29 sites surveyed. Redd depths averaged 3.6 m. We collected a total of 123 live fall Chinook salmon from 16 unique geographic locations that spanned 55 river kilometers. Forty-six fish were recovered at Eureka Bar (rkm 307.1) and Kirby Creek (rkm 352.0), which accounted for 37% of all collected fish in 2019. Most (73 fish) post-spawned salmon were collected from early to mid-November just after peak spawning. A summary of 2019 PBT results can be found in Appendix A.1. In 2019, we PIT tagged subyearling fall Chinook salmon in both the Snake and Clearwater rivers. In the Snake River, we tagged 410 fish with 8-mm tags, 666 fish with 9-mm tags, and 1,082 fish 12-mm tags. During seining, our recapture rate of previously tagged fish was slightly higher in the lower reach at 11.4% than in the upper reach at 10.6%. In an effort to represent more of the population through tagging, we tagged fish as small as 45 mm with 8-mm tags at one site in the upper reach. This allowed us to increase the number of fish tagged in that reach by 17.7%. An additional 10.6% of collected fish could have been tagged in the lower reach had we used 8-mm tags in that reach. In the Clearwater River, we tagged 2,451 subyearlings and recaptured 260 (10.6%) fish in the river and 66 fish (48 tagged by USGS, 18 tagged by the Nez Perce Tribe) at Lower Granite Dam during October to provide information for growth estimation. Within riverine habitats, growth in both length and mass were higher for fish tagged with 8-mm tags than with 9- and 12-mm tags. Estimated growth in length and mass of subyearlings was higher in Lower Granite Reservoir than in riverine habitats. We adapted existing statistical models used to estimate abundance of steelhead and spring/summer Chinook salmon for fall Chinook salmon passing Lower Granite Dam. Run reconstruction efforts to date at Lower Granite Dam for Snake River fall Chinook salmon have provided estimates of the number of returning adults but with no measure of uncertainty about the estimates. The objective of this study was to estimate the abundance, with uncertainty, of marked (coded-wire tagged CWT or adipose clipped) and unmarked fall Chinook salmon past Lower Granite Dam for return years 20032018. Estimating uncertainty is important for informing the state-space life cycle model (Chapter 5), which incorporates both observation and process uncertainty into parameter estimates. The coefficient of variation (CV) for log- abundance was 1.0% or less in all years, whereas the CV for abundance averaged 4.2% and ranged from 1.4% to 10.4% among years. Over the past five years, we have been developing a two-stage state-space life-cycle model for naturally produced fall Chinook salmon in the Snake River basin. Initial efforts focused on generating juvenile and adult abundance estimates, with estimates of uncertainty, for informing the life-cycle model. In this report we 1) describe the statistical life-cycle model and improvements made since our last report to the Independent Scientific Advisory Board (ISAB), 2) estimate the effects of covariates on key demographic parameters, and 3) use the fitted life- cycle model to simulate population trajectories under hydrosystem actions proposed for the NOAA 2020 Biological Opinion (hereafter, the Proposed Action). Major recent advancements to the model include revised juvenile abundance estimates, the ability to estimate smolt-to-adult return rates (SAR) separately for subyearling and yearling juvenile fall Chinook salmon, and improvements in the observation model for estimating age, sex, and outmigration structure in adult returns. We examined the effect of numerous environmental, hydrosystem, and ocean covariates on key demographic parameters but only a few covariates were significant. For the adult-to-juvenile transition, we found the maximum weekly river flows during the winter egg- incubation period had a significant negative effect on the juvenile outmigrant abundance from that brood year. For subyearling outmigrants, percent spill during the summer had a significant positive effect on SAR and the mean winter PDO (Pacific Decadal Oscillation) had a significant negative effect on SAR. For yearling outmigrants, NPGO (North Pacific Gyre Oscillation) had a significant positive effect on SAR. We used the fitted model to simulate population trajectories under the Proposed Action, and the median 10-year geometric mean abundance was 8,222 female spawners (interquartile range: 2,592 26,714). Overall, the probability of quasi- extinction (probability of falling below 50 female spawners for 4 consecutive years) was low, with only 1.6% of all simulations having a quasi-extinction probability >0.95. Although quasi-extinction probability was low, we did not assess the additional effect of climate change, which would be expected to increase quasi-extinction probability.

Idaho, Oregon, Washington↗

Sediment dynamics in the restored reach of the Kissimmee River Basin, Florida: A vast subtropical riparian wetland

Historically, the Kissimmee River Basin consisted of a broad nearly annually inundated riparian wetland similar in character to tropical Southern Hemisphere large rivers. The river was channelized in the 1960s and 1970s, draining the wetland. The river is currently being restored with over 10 000 hectares of wetlands being reconnected to 70 river km of naturalized channel. We monitored riparian wetland sediment dynamics between 2007 and 2010 at 87 sites in the restored reach and 14 sites in an unrestored reference reach. Discharge and sediment transport were measured at the downstream end of the restored reach. There were three flooding events during the study, two as annual flood events and a third as a greater than a 5-year flood event. Restoration has returned periodic flood flow to the riparian wetland and provides a mean sedimentation rate of 11.3 mm per year over the study period in the restored reach compared with 1.7 mm per year in an unrestored channelized reach. Sedimentation from the two annual floods was within the normal range for alluvial Coastal Plain rivers. Sediment deposits consisted of over 20% organics, similar to eastern blackwater rivers. The Kissimmee River is unique in North America for its hybrid alluvial/blackwater nature. Fluvial suspended-sediment measurements for the three flood events indicate that a majority of the sediment (70%) was sand, which is important for natural levee construction. Of the total suspended sediment load for the three flood events, 3%–16% was organic and important in floodplain deposition. Sediment yield is similar to low-gradient rivers draining to the Chesapeake Bay and alluvial rivers of the southeastern USA. Continued monitoring should determine whether observed sediment transport and floodplain deposition rates are normal for this river and determine the relationship between historic vegetation community restoration, hydroperiod restoration, and sedimentation.

Florida↗

Declining geomorphic diversity and potential adaptive management opportunities on a highly regulated reach of the Bighorn River, Montana

Rivers downstream from dams often experience decreased flow variability and disrupted sediment transport. We investigated a highly regulated 35.5-kilometre reach of the Bighorn River, downstream from Yellowtail Dam, emplaced in 1965. This dam created a thriving trout fishery, but more recently, side channel networks and habitat diminished. We document how the Bighorn River's anabranching morphology responded to flow regulation and a near cessation of sediment supply. Geomorphic diversity drastically decreased since 1939 and the Bighorn River abandoned numerous side channels. By 1980, geomorphic loss slowed, and the river became laterally static. The 1980 river and side channel network could represent the maximum areal extent of a downscaled morphology, maintained through restoration and adaptive management. However, side channel restoration alone will not return natural alluvial processes to this river reach. The Bighorn River needs sediment to reinstate dynamic lateral movement, even within a downscaled morphology. Sediment augmentation is an option, but more complex to implement on rivers where potential downstream impacts and landowners must be considered. The decline of geomorphic diversity and potential adaptive management solutions on the Bighorn River has wide applicability to numerous dammed rivers, where similar changes to the flow and sediment transport regime are common.

Montana, Wyoming↗

A quantitative life history of endangered humpback chub that spawn in the Little Colorado River: variation in movement, growth, and survival

While the ecology and evolution of partial migratory systems (defined broadly to include skip spawning) have been well studied, we are only beginning to understand how partial migratory populations are responding to ongoing environmental change. Environmental change can lead to differences in the fitness of residents and migrants, which could eventually lead to changes in the frequency of the strategies in the overall population. Here, we address questions concerning the life history of the endangered Gila cypha (humpback chub) in the regulated Colorado River and the unregulated tributary and primary spawning area, the Little Colorado River. We develop eight multistate models for the population based on three movement hypotheses, in which states are defined in terms of fish size classes and river locations. We fit these models to mark–recapture data collected in 2009–2012. We compare survival and growth estimates between the Colorado River and Little Colorado River and calculate abundances for all size classes. The best model supports the hypotheses that larger adults spawn more frequently than smaller adults, that there are residents in the spawning grounds, and that juveniles move out of the Little Colorado River in large numbers during the monsoon season (July–September). Monthly survival rates for G. cypha in the Colorado River are higher than in the Little Colorado River in all size classes; however, growth is slower. While the hypothetical life histories of life-long residents in the Little Colorado River and partial migrants spending most of its time in the Colorado River are very different, they lead to roughly similar fitness expectations when we used expected number of spawns as a proxy. However, more research is needed because our study period covers a period of years when conditions in the Colorado River for G. cypha are likely to have been better than has been typical over the last few decades.

Colorado River;Little Colorado River↗

Carbon dynamics of river corridors and the effects of human alterations

Research in stream metabolism, gas exchange, and sediment dynamics indicates that rivers are an active component of the global carbon cycle and that river form and process can influence partitioning of terrestrially derived carbon among the atmosphere, geosphere, and ocean. Here we develop a conceptual model of carbon dynamics (inputs, outputs, and storage of organic carbon) within a river corridor, which includes the active channel and the riparian zone. The exchange of carbon from the channel to the riparian zone represents potential for storage of transported carbon not included in the “active pipe” model of organic carbon (OC) dynamics in freshwater systems. The active pipe model recognizes that river processes influence carbon dynamics, but focuses on CO 2 emissions from the channel and eventual delivery to the ocean. We also review how human activities directly and indirectly alter carbon dynamics within river corridors. We propose that dams create the most significant alteration of carbon dynamics within a channel, but that alteration of riparian zones, including the reduction of lateral connectivity between the channel and riparian zone, constitutes the most substantial change of carbon dynamics in river corridors. We argue that the morphology and processes of a river corridor regulate the ability to store, transform, and transport OC, and that people are pervasive modifiers of river morphology and processes. The net effect of most human activities, with the notable exception of reservoir construction, appears to be that of reducing the ability of river corridors to store OC within biota and sediment, which effectively converts river corridors to OC sources rather than OC sinks. We conclude by summarizing knowledge gaps in OC dynamics and the implications of our findings for managing OC dynamics within river corridors.

Ecological Monographs↗

Lake sturgeon seasonal movements in regulated and unregulated Missouri River tributaries

Spatio-temporal movement patterns of aquatic organisms drive many ecological processes. However, dams block migrations and alter the hydrologic and thermal regimes influencing movement behaviour of freshwater fishes. In North America, many recovering southern Lake Sturgeon populations occur in rivers with hydroelectric dams, but few studies have examined the impact of hydrologic alteration on their seasonal movements. We conducted a 3-year telemetry study of 96 adult and subadult Lake Sturgeon to compare their migratory responses to temperature and hydrology in adjacent regulated and unregulated tributaries of the Missouri River. Many other populations of Lake Sturgeon use tributaries primarily for spring spawning; however, in our study, Lake Sturgeon used Missouri River tributaries during 78% of the year. Differences in river size, hydrologic and thermal regimes in the regulated Osage River may have contributed to the greater year-round residency, later initiation, more frequent directional changes and longer duration of spring migrations compared to the unregulated Gasconade River. Lake Sturgeon made spring upstream migrations at temperatures of 13–19°C and elevated discharges in both rivers. However, Osage River migrants responded less to changes in discharge or temperature during spring migrations, especially those that overwintered at upstream locations. Fall tributary migrations occurred in the Osage River at rising or high discharges but were uncommon in the Gasconade River. Our identification of the influences of abiotic variables on the timing, duration and extent of Lake Sturgeon seasonal migrations can help guide management of habitat and hydrology in regulated rivers to recover migratory fishes globally.

Missouri↗

Exploration of the 2016 Yellowstone River fish kill and proliferative kidney disease in wild fish populations

Proliferative kidney disease (PKD) is an emerging disease that recently resulted in a large mortality event of salmonids in the Yellowstone River (Montana, USA). Total PKD fish mortalities in the Yellowstone River were estimated in the tens of thousands, which resulted in a multi‐week river closure and an estimated economic loss of US$500,000. This event shocked scientists, managers, and the public, as this was the first occurrence of the disease in the Yellowstone River, the only reported occurrence of the disease in Montana in the past 25 yr, and arguably the largest wild PKD fish kill in the world. To understand why the Yellowstone River fish kill occurred, we used molecular and historical data to evaluate evidence for several hypotheses: Was the causative parasite Tetracapsuloides bryosalmonae a novel invader, was the fish kill associated with a unique parasite strain, and/or was the outbreak caused by unprecedented environmental conditions? We found that T. bryosalmonae is widely distributed in Montana and have documented occurrence of this parasite in archived fish collected in the Yellowstone River prior to the fish kill. T. bryosalmonae had minimal phylogeographic population structure, as the DNA of parasites sampled from the Yellowstone River and distant water bodies were very similar. These results suggest that T. bryosalmonae could be endemic in Montana. Due to data limitations, we could not reject the hypothesis that the fish kill was caused by a novel and more virulent genetic strain of the parasite. Finally, we found that single‐year environmental conditions are insufficient to explain the cause of the 2016 Yellowstone River PKD outbreak. Other regional rivers where we documented T. bryosalmonae had similar or even more extreme conditions than the Yellowstone River and similar or more extreme conditions have occurred in the Yellowstone River in the recent past, yet mass PKD mortalities have not been documented in either instance. We conclude by placing these results and unresolved hypotheses into the broader context of international research on T. bryosalmonae and PKD, which strongly suggests that a better understanding of bryozoans, the primary host of T. bryosalmonae , is required for better ecosystem understanding.

Montana↗

High potential but low achievement: Frequent disturbance constrains the light use efficiency of river ecosystems

We rarely consider light limitation in ecosystem productivity, yet light limitation is a major constraint on river autotrophy. Because the light that reaches benthic autotrophs must first pass through terrestrial vegetation and an overlying water column that can be loaded with sediments or colored organic material, there is strong selection for river autotrophs to have high light use efficiencies (LUEs), that is, the efficiency at which light energy is converted to biomass. In contrast to prior studies that have estimated river LUE on single days, we calculated continuous LUE over more than 6 full years for 64 free-flowing rivers across the United States. This dataset represents the largest compilation of continuous estimates of daily rates of gross primary productivity (GPP) and daily light inputs from which we calculated daily estimates of LUE. Early estimates of LUE in rivers found that clearwater springs with stable flows could achieve LUEs of 4%, much higher than LUEs reported for terrestrial plants. We found that 53% of the rivers in our dataset have LUEs that exceed 4% on at least one day of their time series. Because of the high variability in daily LUE, measurements taken on any given day may misrepresent a river ecosystem's annual LUE. Though most rivers share a high potential, the mean annual LUE of all rivers in our dataset is much lower, only 0.5%. We found that rivers with more variable flow regimes had lower annual LUEs, which indicates that LUE is constrained by hydrologic disturbances that remove, bury, or shade autotrophic biomass. Comparisons of LUE across ecosystems allow us to reframe our view of rivers, by recognizing the high efficiency with which they convert light to biomass compared with lentic, marine, and terrestrial ecosystems.

conterminous United States↗

Biomarker response and health of polychlorinated biphenyl- and chlordane-contaminated paddlefish from the Ohio River Basin, USA

Fifty paddlefish ( Polyodon spathula ) collected from two sites on the Ohio River and from one site on the Cumberland River, USA, were examined to determine gonad polychlorinated biphenyl (PCB) and chlordane concentrations, amounts of plasma sex steroids (testosterone and estradiol), hepatic microsomal ethoxyresorufin- O -deethylase (EROD) activity, and the presence of immunoreactive cytochrome P450 1A (CYP1A) protein. Percent hatch and liver, spleen, and kidney histology were also determined. Gonad PCB and chlordane concentrations were significantly higher in Ohio River paddlefish than in Cumberland River paddlefish. Gonad PCB and chlordane concentration and gonad percent lipid were correlated in Ohio River paddlefish. Five of 10 Ohio River egg samples exceeded the Food and Drug Administration's action limit for chlordane (0.30 μg/g). Polychlorinated biphenyl congener-specific analysis detected predominantly the tetra-, penta-, and hexachlorobiphenyls in paddlefish testes. Plasma testosterone levels were significantly lower in males collected from the upper Ohio River site than those collected from the lower part of the river. There was no measurable hepatic microsomal EROD activity in any of the 50 paddlefish collected from the three sites. Western blotting analysis confirmed that a rabbit antitrout CYP1A1 IgG antibody did not recognize a CYP1A protein in paddlefish liver microsomes. Percent hatch was not significantly different in eggs collected from the Cumberland (88–96%) and Ohio Rivers (90–95%). Histological analysis of liver, spleen, and kidney detected the presence of hepatic steatosis and hemosiderosis, splenic lymphoid cell depletion, and hyperplasia of interrenal and chromaffin tissues. Immunosuppression, hepatic metabolic disorders, and altered neuroendocrine function may be occurring in Ohio River paddlefish. Results presented here suggest that organochlorine exposure may be jeopardizing the long-term health of Ohio River paddlefish and that additional investigation of contaminant effects on immune system function and hormone levels in paddlefish is warranted.

Alabama, Georgia, Illinois, Indiana, Kentucky, Mar↗

Rethinking the longitudinal stream temperature paradigm: region-wide comparison of thermal infrared imagery reveals unexpected complexity of river temperatures

Prevailing theory suggests that stream temperature warms asymptotically in a downstream direction, beginning at the temperature of the source in the headwaters and leveling off downstream as it converges to match meteorological conditions. However, there have been few empirical examples of longitudinal patterns of temperature in large rivers due to a paucity of data. We constructed longitudinal thermal profiles (temperature versus distance) for 53 rivers in the Pacific Northwest (USA) using an extensive dataset of remotely sensed summertime river temperatures and classified each profile into one of five patterns of downstream warming: asymptotic (increasing then flattening), linear (increasing steadily), uniform (not changing), parabolic (increasing then decreasing), or complex (not fitting other classes). We evaluated (1) how frequently profiles warmed asymptotically downstream as expected, and (2) whether relationships between river temperature and common hydroclimatic variables differed by profile class. We found considerable diversity in profile shape, with 47% of rivers warming asymptotically, and 53% having alternative profile shapes. Water temperature did not warm substantially over the course of the river for coastal parabolic and uniform profiles, and for some linear and complex profiles. Profile classes showed no clear geographical trends. The degree of correlation between river temperature and hydroclimatic variables differed among profile classes, but there was overlap among classes. Water temperature in rivers with asymptotic or parabolic profiles was positively correlated with August air temperature, tributary temperature and velocity, and negatively correlated with elevation, August precipitation, gradient, and distance upstream. Conversely, associations were less apparent in rivers with linear, uniform, or complex profiles. Factors contributing to the unique shape of parabolic profiles differed for coastal and inland rivers, where downstream cooling was influenced locally by climate or cool water inputs, respectively. Potential drivers of shape for complex profiles were specific to each river. These thermal patterns indicate diverse thermal habitats that may promote resilience of aquatic biota to climate change. Without this spatial context, climate change models may incorrectly estimate loss of thermally suitable habitat.

California, Idaho, Oregon, Washington↗

The effect of mining and related activities on the sediment-trace element geochemistry of Lake Coeur d'Alene, Idaho, USA. Part III. Downstream effects: The Spokane River Basin

During 1998/1999, surface and subsurface sediment samples were collected along the entire length of the Spokane River from its outlet at the northern end of Lake Coeur d'Alene (CDA), Idaho, to Lake Roosevelt on the Columbia River, Washington. The study was conducted to determine if the trace element enrichments observed in Lake CDA and on the floodplain and in the CDA River extend through the Spokane River Basin (SRB). As in Lake CDA, surface sediments in the SRB are enriched in Pb, Zn, As, Cd, Sb and Hg relative to local background levels. Pb, Cd and Zn are the most elevated, with maximum enrichment occurring in the upper Spokane River in close proximity to Lake CDA. On average, enrichment decreases downstream, apparently reflecting both increased distance from the inferred source (the CDA River Basin), as well as increased dilution by locally derived but unenriched materials. Only Cd and Zn display marked enrichment throughout the SRB. Pb, Zn and Cd seem to be associated mainly with an operationally defined iron oxide phase, whereas the majority of the As and Sb seem to be matrix-held. Subsurface sediments also are enriched in Pb, Zn, As, Cd, Sb and Hg relative to background levels. Based on 137Cs and excess 210Pb dating, trace element enrichment began in the middle part of the SRB (Long Lake) between 1900 and 1920. This is contemporaneous with similar enrichments observed in Lake CDA, as well as the completion of Long Lake Dam (1913). In the most downstream part of the basin (Spokane River Arm of Lake Roosevelt), enrichment began substantially later, between 1930 and 1940. The temporal difference in enrichment between Long Lake and the River Arm may reflect the latter's greater distance from the presumed source of the enrichment (the CDA River Basin); however, the difference is more likely the result of the completion of Grand Coulee Dam (1934-1941), which formed Lake Roosevelt, backed up the Spokane River, and increased water levels in the River Armby about 30 m.

Hydrological Processes↗

In situ quantification of spatial and temporal variability of hyporheic exchange in static and mobile gravel-bed rivers

Seepage meters modified for use in flowing water were used to directly measure rates of exchange between surface and subsurface water in a gravel‐ and cobble bed river in western Pennsylvania, USA (Allegheny River, Qmean = 190 m3/s) and a sand‐ and gravel‐bed river in Colorado, USA (South Platte River, Qmean = 9·7 m3/s). Study reaches at the Allegheny River were located downstream from a dam. The bed was stable with moss, algae, and river grass present in many locations. Median seepage was + 0·28 m/d and seepage was highly variable among measurement locations. Upward and downward seepage greatly exceeded the median seepage rate, ranging from + 2·26 (upward) to − 3·76 (downward) m/d. At the South Platte River site, substantial local‐scale bed topography as well as mobile bedforms resulted in spatial and temporal variability in seepage greatly in exceedence of the median groundwater discharge rate of 0·24 m/d. Both upward and downward seepage were recorded along every transect across the river with rates ranging from + 2·37 to − 3·40 m/d. Despite a stable bed, which commonly facilitates clogging by fine‐grained or organic sediments, seepage rates at the Allegheny River were not reduced relative to those at the South Platte River. Seepage rate and direction depended primarily on measurement position relative to local‐ and meso‐scale bed topography at both rivers. Hydraulic gradients were small at nearly all seepage‐measurement locations and commonly were not a good indicator of seepage rate or direction. Therefore, measuring hydraulic gradient and hydraulic conductivity at in‐stream piezometers may be misleading if used to determine seepage flux across the sediment‐water interface. Such a method assumes that flow between the well screen and sediment‐water interface is vertical, which appears to be a poor assumption in coarse‐grained hyporheic settings.

Pennsylvania↗

Movement dynamics of nonnative Burbot in the upper Green River system and implications for management

Burbot Lota lota were illegally introduced to the Green River, Wyoming, in the mid-1990s and pose a threat to recreational fisheries and native fish conservation. Although much is known about Burbot population dynamics, little is known about their movement patterns. Our objectives were to describe the movement dynamics of Burbot in the upper Green River system to provide information on the ecology of Burbot and insight on possible management actions. In total, 875 Burbot were tagged with PIT tags in the upper Green River and Fontenelle Reservoir; their movements were tracked from August 2016 to March 2018. Additionally, 22 Burbot were tagged with radio transmitters in Fontenelle Reservoir in November 2017, and 13 Burbot were tagged with radio transmitters in the upper Green River in November 2018. Of these fish, 11 Burbot tagged in Fontenelle Reservoir and all river-tagged Burbot were tracked as they migrated into the Green River and associated tributaries during the spawning season. Upstream and downstream movements of Burbot tagged with PIT tags in Fontenelle Reservoir and the upper Green River peaked during December–January and were synchronized with river temperatures reaching 0°C. Of the total number of PIT-tagged Burbot, 10–15% of those tagged in Fontenelle Reservoir were detected in the Green River during the spawning season and 15% of those tagged in the Green River were detected moving downstream toward Fontenelle Reservoir during the spawning period. Movements of radiotelemetered Burbot were synchronized with river ice-up in mid-December. Maximum upstream distance traveled by adfluvial Burbot was 5.8 km. Fluvial Burbot primarily migrated downstream during the spawning period, and maximum downstream distance traveled was 17.7 km. Detection data suggest that both fluvial and adfluvial Burbot occupy the same reaches during the spawning period and areas near Fontenelle Reservoir are important for spawning. Results of this study will assist with the management of Burbot in this system by shedding light on Burbot movement patterns and identifying areas of high Burbot use for targeted suppression efforts. Results also contribute to our understanding of the variability in Burbot ecology.

Wyoming↗

Limnological aspects of the St. Clair River

To better characterize neoplasm epizootics in the Great Lakes basin and their association with families of contaminants, we sampled five locations: the Fox and Menominee rivers, Lake Michigan; Munuscong Lake, St. Mary's River; and the Black and Cuyahoga rivers, Lake Erie. Frequencies of external and liver tumors were determined for brown bullhead ( Ictalurus nebulosus ) from all locations except the Black River and for walleye ( Stizostedion vitreum ) from the Lake Michigan and St. Mary's River sites. Sediment samples were analyzed for metals, polychlorinated aromatics, and polynuclear aromatic hydrocarbons (PAH). Liver neoplasms occurred in brown bullhead from the Cuyahoga River and Munuscong Lake; brown bullhead captured from Munuscong Lake were older than those collected from the other locations. Brown bullhead from these same two rivers had elevated hepatosomatic indexes. No liver neoplasms were found in brown bullhead from the Fox and Menominee rivers, although polychlorinated aromatics were highest in both Fox River sediment and Fox and Menominee brown bullhead, and arsenic was highest in Menominee River sediment and fish. Liver neoplasms in brown bullhead from the Cuyahoga River fit the prevailing hypothesis that elevated PAH in sediment can induce cancer in wild fish. The cause of the liver neoplasms in Munuscong Lake brown bullhead is undetermined.

Michigan;Ontario↗

Field evaluation of lead effects on Canada geese and mallards in the Coeur d'Alene River Basin, Idaho

Hatch year (HY) mallards ( Anas platyrhynchos ) in the Coeur d'Alene (CDA) River Basin had higher concentrations of lead in their blood than HY Western Canada geese ( Branta canadensis moffitti ) (geometric means 0.98 versus 0.28 μg/g, wet weight). The pattern for adults of both species was similar, although geometric means (1.77 versus 0.41 μg/g) were higher than in HY birds. HY mallards captured in the CDA River Basin in 1987 contained significantly lower lead concentrations in their blood than in 1994–95 (0.36 versus 0.98 μg/g); however, some very young mallards were sampled in 1987, and concentrations in adults were not significantly different in 1987, 1994, or 1995 (1.52, 2.07, 1.55 μg/g, respectively). Both species in the CDA River Basin in 1994–95 showed significantly reduced red blood cell delta-aminolevulinic acid dehydratase (ALAD) activity compared to the reference areas: Canada geese (HY −65.4 to −86.0%, adults −82.3%), and mallards (HY −90.7 to −95.5%, adults −94.1%). Canada goose goslings were divided into size classes, and the two smaller classes from the CDA River Basin had significantly elevated free erythrocyte protoporphyrin (protoporphyrin) levels compared to the reference area (15.2× and 6.9×). HY and adult mallards both had significantly elevated protoporphyrin (5.9× and 7.5×). Recognizing that interspecific differences exist in response and sensitivity to lead, it appears (at least for hemoglobin and hematocrit) that Canada geese were more sensitive to lead than mallards, i.e ., adverse hematologic effects occur at lower blood lead concentrations. Only Canada geese from the CDA River Basin, in spite of lower blood lead concentrations, had significantly reduced mean hemoglobin and hematocrit values. No euthanized Canada geese (all HYs) from CDA River Basin were classified as clinically lead poisoned, but 38 Canada geese found dead in the CDA River Basin during a concurrent study succumbed to lead poisoning between 1992 and 1997. Only 6 (15.8%) of these 38 contained ingested lead shot, which contrasts greatly with the 75–94% incidence of ingested lead shot when mortality was due to lead shot ingestion. Lead from other contaminated sources ( i.e ., sediments and vegetation) in the CDA River Basin was strongly implicated in most Canada goose deaths. Based on the 31 live mallards and Canada geese collected in the CDA River Basin, which were representative of the live populations blood sampled only, the prevalence of subclinical and clinical lead poisoning (as determined by liver lead concentrations, excluding birds with ingested lead shot) was higher in mallards: subclinical (4 of 8, 50% HYs and 6 of 11, 55% adults); clinical (0% HYs and 4 of 11, 36% adults), with less data available for Canada geese (only 1 of 9, 11% HYs marginally subclinical). The clinically lead-poisoned mallards had extremely high concentrations of lead in blood (2.69–8.82 μg/g) and liver (6.39–17.89 μg/g). Eight mallards found dead in the CDA River Basin during a concurrent study were diagnosed as lead poisoned, and only one (12.5%) contained ingested lead shot, which again strongly implicates other lead sources. The finding of dead lead poisoned Canada geese together with the high percentage of live mallards classified as subclinically or clinically lead poisoned, in combination with the low incidence of ingested lead shot causes us concern for both of these species, which live in association with lead-contaminated sediment in the CDA River Basin.

Idaho↗

Effects of contaminants in dredge material from the Lower Savannah River

Contaminants entering aquatic systems from agricultural, industrial, and municipal activities are generally sequestered in bottom sediments. The environmental significance of contaminants associated with sediments dredged from Savannah Harbor, Georgia, USA, are unknown. To evaluate potential effects of contaminants in river sediments and sediments dredged and stored in upland disposal areas on fish and wildlife species, solid-phase sediment and sediment pore water from Front River, Back River, an unnamed Tidal Creek on Back River, and Middle River of the distributary system of the lower Savannah River were tested for toxicity using the freshwater amphipod Hyalella azteca . In addition, bioaccumulation of metals from sediments collected from two dredge-disposal areas was determined using the freshwater oligochaete Lumbriculus variegatus . Livers from green-winged teals ( Anas crecca ) and lesser yellowlegs ( Tringa flavipes ) foraging in the dredge-spoil areas and raccoons ( Procyon lotor ) from the dredge-disposal/river area and an upland site were collected for metal analyses. Survival of H. azteca was not reduced in solid-phase sediment exposures, but was reduced in pore water from several locations receiving drainage from dredge-disposal areas. Basic water chemistry (ammonia, alkalinity, salinity) was responsible for the reduced survival at several sites, but PAHs, metals, and other unidentified factors were responsible at other sites. Metal residues in sediments from the Tidal Creek and Middle River reflected drainage or seepage from adjacent dredge-disposal areas, which could potentially reduce habitat quality in these areas. Trace metals increased in L. variegatus exposed in the laboratory to dredge-disposal sediments; As, Cu, Hg, Se, and Zn bioaccumulated to concentrations higher than those in the sediments. Certain metals (Cd, Hg, Mo, Se) were higher in livers of birds and raccoons than those in dredge-spoil sediments suggesting bioavailability. Cadmium, Ct, Hg, Pb, and Se in livers from raccoons collected near the river and dredge-disposal areas were significantly higher than those of raccoons from the upland control site. Evidence of bioaccumulation from laboratory and field evaluations and concentrations in sediments from dredge-disposal areas and river channels demonstrated that some metals in the dredge-disposal areas are mobile and biologically available. Drainage from dredge-disposal areas may be impacting habitat quality in the river, and fish and wildlife that feed and nest in the disposal area pm the lower Savannah River may be at risk from metal contamination.

Georgia, South Carolina↗

Assessing ecological integrity of Ozark rivers to determine suitability for protective status

Preservation of extraordinary natural resources, protection of water quality, and restoration of impaired waters require a strategy to identify and protect least-disturbed streams and rivers. We applied two objective, quantitative methods to determine stream ecological integrity of headwater reaches of 10 Ozark rivers, 5 with Wild and Scenic River federal protective status. Thirty-four variables representing macroinvertebrate and fish assemblage characteristics, in-stream habitat, riparian vegetation, water quality, and watershed attributes were quantified for each river and analyzed using two multivariate approaches. The first approach, cluster and discriminant analyses, identified two groups of river with only one variable (% forested watershed) reliably distinguishing groups. Our second approach employed ordinal scaling to compare variables for each river to conceptually ideal conditions that were developed as a composite of optimal attributes among the 10 rivers. The composite distance of each river from ideal was then calculated using a unidimensional ranking technique. Two rivers without Wild and Scenic River designation ranked highest relative to ideal (highest ecological integrity), and two others, also without designation, ranked most distant from ideal (lowest ecological integrity). Fish density, number of intolerant fish species, and invertebrate density were influential biotic variables for scaling. Contributing physical variables included riparian forest cover, water nitrate concentration, water turbidity, percentage of forested watershed, percentage of private land ownership, and road density. These methods provide a framework for refinement and application in other regions to facilitate the process of establishing least-disturbed reference conditions and identifying rivers for protection and restoration. ?? 2005 Springer Science+Business Media, Inc.

Environmental Management↗