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USGS1986

Irrigated acreage and other land uses on the Snake River Plain, Idaho and eastern Oregon

Prompted by the need for a current, accurate, and repeatable delineation of irrigated acreage on the Snake River Plain, the U.S. Geological Survey entered into a cooperative agreement with the Idaho Department of Water Resources Image Analysis Facility and the U.S. Bureau of Reclamation to delineate 1980 land use form Landsat data. Irrigated acreage data were needed as input to groundwater flow models developed by the U.S. Geological Survey in a study of the regional aquifer system underlying the Snake River Plain. Single-date digital multispectral scanner data analyzed to delineate land-use classes. Source of irrigation water (surface water, ground water, and combined) was determined from county maps of 1975 water-related land use, data from previous investigations, and field checking. Surface-water diversions for irrigation on the Snake River Plain began in the 1840's. With the stimulus of Federal aid authorized by the Desert Land Act, Carey Act, and Reclamation Act, irrigated area increased rapidly in the early 1900's. By 1929, 2.2 million acres were irrigated. Ground water became and important source of irrigation water after World War II. In 1980, about 3.1 million acres of the Snake River Plain were irrigate: 2.0 million acres with surface water, 1.0 million with ground water, and 0.1 million with combined surface and ground water. About 5.2 million acres (half of the plain) are undeveloped rangeland, 1.0 million acres (one-tenth) are classified as barren. The remaining land is a mixture of dryland agriculture, water bodies, wetland, forests, and urban areas.

Idaho;Oregon↗

USGS2013

Use of surrogate technologies to estimate suspended sediment in the Clearwater River, Idaho, and Snake River, Washington, 2008-10

Elevated levels of fluvial sediment can reduce the biological productivity of aquatic systems, impair freshwater quality, decrease reservoir storage capacity, and decrease the capacity of hydraulic structures. The need to measure fluvial sediment has led to the development of sediment surrogate technologies, particularly in locations where streamflow alone is not a good estimator of sediment load because of regulated flow, load hysteresis, episodic sediment sources, and non-equilibrium sediment transport. An effective surrogate technology is low maintenance and sturdy over a range of hydrologic conditions, and measured variables can be modeled to estimate suspended-sediment concentration (SSC), load, and duration of elevated levels on a real-time basis. Among the most promising techniques is the measurement of acoustic backscatter strength using acoustic Doppler velocity meters (ADVMs) deployed in rivers. The U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, Walla Walla District, evaluated the use of acoustic backscatter, turbidity, laser diffraction, and streamflow as surrogates for estimating real-time SSC and loads in the Clearwater and Snake Rivers, which adjoin in Lewiston, Idaho, and flow into Lower Granite Reservoir. The study was conducted from May 2008 to September 2010 and is part of the U.S. Army Corps of Engineers Lower Snake River Programmatic Sediment Management Plan to identify and manage sediment sources in basins draining into lower Snake River reservoirs. Commercially available acoustic instruments have shown great promise in sediment surrogate studies because they require little maintenance and measure profiles of the surrogate parameter across a sampling volume rather than at a single point. The strength of acoustic backscatter theoretically increases as more particles are suspended in the water to reflect the acoustic pulse emitted by the ADVM. ADVMs of different frequencies (0.5, 1.5, and 3 Megahertz) were tested to target various sediment grain sizes. Laser diffraction and turbidity also were tested as surrogate technologies. Models between SSC and surrogate variables were developed using ordinary least-squares regression. Acoustic backscatter using the high frequency ADVM at each site was the best predictor of sediment, explaining 93 and 92 percent of the variability in SSC and matching sediment sample data within +8.6 and +10 percent, on average, at the Clearwater River and Snake River study sites, respectively. Additional surrogate models were developed to estimate sand and fines fractions of suspended sediment based on acoustic backscatter. Acoustic backscatter generally appears to be a better estimator of suspended sediment concentration and load over short (storm event and monthly) and long (annual) time scales than transport curves derived solely from the regression of conventional sediment measurements and streamflow. Changing grain sizes, the presence of organic matter, and aggregation of sediments in the river likely introduce some variability in the model between acoustic backscatter and SSC.

Idaho;Washington↗

USGS2020

Discharge and dissolved-solids characteristics and trends of Snake River above Jackson Lake at Flagg Ranch, Wyoming, 1986–2018

The headwaters of the Snake River are in the mountains of northwestern Wyoming. Maintaining the recognized high quality of water in Grand Teton National Park is a National Park Service (NPS) priority. To characterize and understand the water resources of Grand Teton National Park, the NPS established a monitoring program to monitor the quality of area surface waters. Beginning in 2006, water was sampled by the NPS and analyzed for a range of chemical species at the Snake River above Jackson Lake at Flagg Ranch streamgage 13010065 (hereafter referred to as “Snake River at Flagg Ranch”), a site where the U.S. Geological Survey (USGS) previously sampled and analyzed water from 1986 through 2004. The USGS, in cooperation with the NPS, evaluated water-quality data collected by both entities to determine if discharge and total dissolved solids (referred to as dissolved solids) have changed in the Snake River at the Flagg Ranch. To understand potential changes with time in dissolved solids, discharge was analyzed between January 1986 and December 2018, which corresponds with the time period when water-quality data were collected. Mean annual discharge varied during this time, with high, low, mean, and median flows generally increasing from 1986 through 1998, decreasing through 2005, and then generally increasing through 2018. Combining water-quality data collected by the USGS and NPS provides a longer, more complete dataset for analyses. During the period of time when NPS was the sampling agency, specific conductance data were collected, but dissolved-solids data were not. The specific conductance data from both agencies were evaluated to determine if combining the data was justified. The interquartile ranges of data collected by both agencies are similar, and rapid, large changes in values during the period of transition between USGS and NPS sampling do not occur. The USGS and NPS datasets are not statistically different in the spring, summer, or fall, but are statistically different in the winter. The winter differences could be a function of the lack of wintertime NPS sampling, which excludes higher-concentration, lower-discharge data or a function of changes in the actual concentration in the stream. Although there is some difference in the winter datasets, the similarity in sampling methods and general overall data characteristics justifies combining the data for trend analyses. Because the dissolved-solids parameter is useful for managers, it is often calculated from specific conductance using a linear regression model when dissolved-solids data are absent. For this study, creating a modeled dataset of dissolved solids for the NPS data collection period of time provided a longer, more complete dataset of dissolved-solids concentrations. The concentrations of dissolved solids over time are identified by season and indicate that samples collected in the fall and winter have higher concentrations than samples collected in spring and summer. Specifically, the mean dissolved-solids concentrations in fall and winter are around 188 milligrams per liter (mg/L), whereas the mean concentrations are around 130 mg/L in spring and summer. This difference is generally attributed to the dilution of spring and summer samples by snowmelt generated runoff during the high-flow period of the year. Trend analyses of dissolved-solids concentrations and loads indicate that an upward trend in concentration from 1986 to 2018 is likely, and a downward trend in load is highly likely. Comparing 1986 to 2018, dissolved-solids concentration is estimated to have increased by 2.25 mg/L (1.4 percent). During that same period, the dissolved-solids load is estimated to have decreased 11.8 million kilograms per year (12-percent decrease). This decrease is consistent with the estimated decrease in annual mean of daily mean discharge. Because 10 percent of the total change in dissolved-solids load is related to a change in the concentration-discharge relationship and 2 percent is related to changes in discharge, the decreased load is related less to changes in discharge and more to landscape scale processes that are affecting the concentration-discharge relationship. As noted above, the data collected by the USGS and NPS are generally comparable with regards to sampling and analytical methods, and data collected by both agencies were used as one dataset for trend analyses. The current NPS sampling schedule, however, is creating a dataset biased towards lower concentration dissolved-solids data, which occurs during higher summer flows, by only sampling during April through November. From 1986 to 2018, the percentage of NPS samples is small enough that the effect on trends is expected to be minimal. Because of the importance of low flow (winter season) data, it is likely that an April through November sampling regime may affect the ability to detect trends or determine seasonality in the future. Collection of winter data in particular is important based on the findings that the changes in the modeled concentration-discharge relationship over time have been most pronounced during the winter (represented by February) months.

Wyoming↗

USGS2026

Regression models for estimating suspended sediment concentrations and loads and comparison with acoustic surrogate model on the Snake River, Weiser, Idaho, 1977–2022

The U.S. Geological Survey, in cooperation with Idaho Power, developed streamflow- based regression models to estimate suspended sediment concentration (SSC) and loads on the Snake River at Weiser, Idaho site (U.S. Geological Survey streamgage 13269000; hereafter referred to as “Snake at Weiser site”). This site sits upstream from the dams and reservoirs of the Hells Canyon Complex and the Hells Canyon National Recreation Area, where large sandbars along the Snake River that provide recreation and riparian habitat and host archaeological resources have declined since 1973. Analyses of samples from historical (1977- 2003) and modern (2017- 22) periods show that SSC has decreased over time, with median concentrations declining from 50 milligrams per liter (mg/L) to 28 mg/L. Mann- Kendall trend tests confirm statistically significant declines in total SSC and the fine and sand fractions of suspended sediment through the full period of record. Regression models specific to each period outperformed models using the full dataset, suggesting changes in the sediment supply to this reach of the Snake River and highlighting the need for period- based approaches. Regression models for total SSC and fine sediment were more accurate than those for sand, which exhibited greater error and bias, likely reflecting a sand supply limited by upstream dams. The regression model for modern period total SSC and a previously developed acoustic surrogate model showed similar performance, indicating both methods are viable for estimating SSC and loads. These findings help to better quantify suspended sediment concentrations and loads upstream of the Hells Canyon Complex and provide resource managers with tools to better quantify sediment loads affecting reservoir storage and the maintenance of sandbars in the Hells Canyon National Recreation Area.

Idaho, Nevada, Oregon, Utah↗

USGS1985

Results of geohydrologic test drilling in the eastern Snake River Plain, Gooding County, Idaho

A 1,123-foot test hole was core drilled near Wendell, Idaho, during 1981-82 as part of the Snake River Plain regional aquifer study. An upper basalt unit, an intermediate unconsolidated sedimentary rock unit, and a lower basalt unit were penetrated by the test hole. Drilling verified that the upper several hundred feet of high-resistivity material, as determined by surface electrical soundings, is basalt. Core examination, laboratory analysis, and correlation with other drill holes indicated that the basalt is typical of Quaternary basalt of the Snake River Group. Quaternary basalt in the test hole is 200 feet thick. Correlation with other drill holes and comparison with rock outcrops near the Snake River and in the Snake River canyon suggest that the underlying sediments and lower basalt unit are parts of the Tertiary and Quaternary Glenns Ferry Formation and Tertiary Banbury Basalt. Piezometers in the hole verify upward movement of water in a major discharge area for the regional aquifer. Hydraulic head in the bottom of the hole is about 155 feet higher than the water table. Lithologic sequence in the test hole correlates well with sequences in deep drill holes at scattered locations on the plain. (USGS)

Idaho↗

USGS1995

Water-quality assessment of the upper Snake River Basin, Idaho and western Wyoming — Summary of aquatic biological data for surface water through 1992

The 35,800-square-mile upper Snake River Basin in eastern Idaho and western Wyoming was one of 20 areas selected for water-quality study under the National Water-Quality Assessment Program. As part of the initial phase of the study, data were compiled to describe the current (1992) and historical aquatic biological conditions of surface water in the basin. This description of natural and human environmental factors that affect aquatic life provides the framework for evaluating the status and trends of aquatic biological conditions in streams of the basins. Water resource development and stream alterations, irrigated agriculture, grazing, aquaculture, and species introductions have affected stream biota in the upper Snake River Basin. Cumulative effects of these activities have greatly altered cold-water habitat and aquatic life in the middle Snake River reach (Milner Dam to King Hill). Most of the aquatic Species of Special Concern in the basin , consisting of eight native mollusks and three native fish species, are in this reach of the Snake River. Selected long-term studies, including comprehensive monitoring on Rock Creek, have shown reduced pollutant loadings as a result of implementing practice on cropland; however, aquatic life remains affected by agricultural land use. Community level biological data are lacking for most of the streams in the basin, especially for large river. Aquatic life used to assess water quality of the basin includes primarily macroinvertebrate and fish communities. At least 26 different macroinvertebrate and fish community metrics have been utilized to assess water quality of the basin. Eight species of macroinvertebrates and fish are recognized as Species of Special Concern. The native fish faunas of the basin are composed primarily of cold-water species representing 5 families and 26 species. An additional 13 fish species have been introduced to the basin. Concentrations of synthetic organic compounds and trace-element contaminants in whole fish collected in the basin during 1970-90 generally did not exceed National Academy of Sciences and National Academy of Engineering concentration guidelines or the 1980-81 geometric mean concentrations from samples collected as part of the U.S. Fish and Wildlife Service National Contaminant Biomonitoring Program. Currently, there are no State fish consumption advisories on any streams in the basin, The organochlorine compounds DDT and PCB's were the most frequently detected fish tissue contaminant. Selected long-term data on DDT, its metabolites, and PCB's indicate decreasing concentrations of these compounds. Arsenic, mercury, and selenium were slightly elevated compared with nationwide baseline concentrations and may indicate bioaccumularion in the food chain. Concentrations of most other trace elements in fish tissue were below levels of concerns for the protection of humans and wildlife.

Idaho, Wyoming↗

USGS1996

Major sources of nitrogen input and loss in the upper Snake River basin, Idaho and western Wyoming, 1990

Total nitrogen input and loss from cattle manure, fertilizer, legume crops, precipitation, and domestic septic systems in the upper Snake River Basin, Idaho and western Wyoming, were estimated by county for water year 1990. The purpose of these estimations was to rank input of nitrogen by source, determine the amount of total nitrogen potentially available to both ground and surface water through leaching and runoff, and identify areas in the basin where excess nitrogen is produced. The results of the input estimations suggest that domestic septic systems account for less than 1 percent of the total nitrogen input in the basin and precipitation accounts for 6 percent. The remaining 93 percent is produced by cattle manure (29 percent), fertilizer (45 percent), and legume crops (19 percent). Input from cattle manure, fertilizer, and legume crops varies widely among counties and reflects differences in land-use practices such as different cropping patterns and numbers of dairies and feedlots. Residual total nitrogen was estimated by subtracting loss due to cattle manure storage and application, crop uptake, and decomposition of previous-year nonleguminous crop residue (chaff) from all nitrogen input in the basin. Positive mean values of residual total nitrogen in most counties suggest that more total nitrogen is input than is lost. This residual total nitrogen is available for runoff to surface water or leaching to ground water. Three out of four counties where mean values of residual total nitrogen were highest (Cassia, Gooding, and Twin Falls) are located in the western part of the basin, where eutrophication in the Snake River is evident and ground water from many wells contains anomalously high nitrate concentrations. Ground water in the fourth county (Bingham), which includes the Fort Hall area north of Pocatello, also contains high nitrate concentrations. A mass balance of total nitrogen input and loss in Gooding, Jerome, Lincoln, and Twin Falls Counties suggests that more than 6,000,000 kg (6,600 tons) of total nitrogen is input in this four-county area than is discharged by the Snake River. This excess nitrogen probably is utilized by aquatic vegetation in the Snake River (causing eutrophication), stored as nitrogen in soil, stored as nitrate in the ground water and eventually discharged through the springs, utilized by noncrop vegetation, and lost through denitrification.

Idaho;Montana;Nevada;Utah;Wyoming↗

USGS1964

Ground water for irrigation in the Snake River Basin in Idaho

The Snake River basin, in southern Idaho, upstream from the mouth of the Powder River in Oregon, includes more than 50 percent of the land area and 65 percent of the total population of the State. More than 2.5 million acres of land is irrigated ; irrigation agriculture and industry allied with agriculture are the basis of the economy of the basin. Most of the easily developed sources of surface water are fully utilized, and few storage sites remain where water could be made available to irrigate lands under present economic conditions. Because surface-water supplies have be come more difficult to obtain, use of ground water has increased greatly. At the present time (1959), about 600,000 acres of land is irrigated with ground water. Ground-water development has been concentrated in areas where large amounts of water are available beneath or adjacent to tracts of arable land and where the depth to water is not excessive under the current economy. Under these criteria, many of the most favorable areas already have been developed; however, tremendous volumes of water are still available for development. In some places, water occurs at depths considered near or beyond the limit for economic recovery, whereas in some other places, water is reasonably close to the surface but no arable land is available in the vicinity. In other parts of the basin large tracts of arable land are without available water supply. Thus the chief tasks in development of the ground-water resources include not only locating and evaluating ground-water supplies but also the planning necessary to bring the water to the land. Irrigation began in the 1860's ; at the present time more than 10 million acre feet of surface water, some of which is recirculated water, is diverted annually for irrigation of more than 2.5 million acres. Diversion of this large quantity of water has had a marked effect on the ground-water regimen. In some areas, the water table has risen more than 100 feet and the discharge of some springs has more than doubled. Large-scale development of ground water began after World War II, and it is estimated that in 1959 about 1,500,000 acre-feet of ground water was pumped for irrigation of the 600,000 acres irrigated wholly with ground water in addition to a substantial amount of ground water pumped to supplement surface-water supplies. Ground water is also the principal source of supply for municipal, industrial, and domestic use. The water regimen in the Snake River basin is greatly influenced by the geology. The rocks forming the mountains are largely consolidated rocks of low permeability; however, a fairly deep and porous subsoil has formed on them by decay and disintegration of the parent rock. Broad intermontane valleys and basins are partly filled with alluvial sand and gravel. The subsoil and alluvial materials are utilized very little as a source of water supply but are important as seasonal ground-water reservoirs because they store water during periods of high rainfall and snowmelt. Discharge from these reservoirs maintains stream flow during periods of surface runoff. Because these aquifers are fairly thin, they drain rapidly and are considerably depleted at the end of each dry cycle. The plain and plateau areas and tributary valleys, on the other hand, are underlain chiefly by rocks of high permeability and porosity. These rocks, mostly basaltic lava flows and alluvial materials, constitute a reservoir which fluctuates only slightly from season to season. Large amounts' of water are withdrawn from them for irrigation and other uses, and discharge from the Snake Plain aquifer is an important part of the total flow of the Snake River downstream from Hagerman Valley. The ultimate source of ground water in the basin is precipitation on the basin. In the mountainous areas, aquifers mostly are recharged directly by precipitation.

Idaho↗

USGS1925

Power resources of Snake River between Huntington, Oregon and Lewiston, Idaho: Chapter C in Contributions to the hydrology of the United States, 1923-1924

Thousands of people are familiar with that part of Snake River where it flows for more than 300 miles in a general westward course across the plains of southern Idaho, but few have traversed the river where it flows northward and for 200 miles forms the boundary between Idaho and Oregon and for 30 miles the boundary between Idaho and Washington. Below the mining town of Homestead, Oreg., which is the end of a branch line of the Oregon Short Line Railroad, Snake River finds its way through the mountain ranges that seem to block its way to Columbia River in a canyon which, though not so well known, so majestic, nor so kaleidoscopic in color, is in some respects worthy of comparison with the Grand Canyon of the Colorado, for at some places it is deeper and narrower than the Grand Canyon at El Tovar. The Snake, unlike the Colorado, can be reached at many points through the valleys of tributary streams, and the early prospectors no doubt thoroughly explored all parts of the canyon. To traverse the river between Homestead, Oreg., and Lewiston, Idaho, is, however, a difficult undertaking and there are only a few records of boat journeys through the entire stretch. It has long been known that this portion of Snake River contains large potential water powers, but until recently no detailed surveys or examinations covering the entire stretch of the river had been made to determine their location or extent. A railroad has been proposed between Homestead and Lewiston which would provide a direct connection between the railroad systems of northern and southern Idaho. One function of the Geological Survey is to determine the possible interface between transportation routes on land and potential water-power development, and the information set forth in this paper has a bearing on that problem.

Idaho;Oregon↗

USGS2026

Estimating habitat availability for Chinook salmon (Oncorhynchus tshawytscha) and steelhead (O. mykiss) to inform reintroduction planning in the middle Snake River basin, USA

Anadromous fishes have been blocked from the middle Snake River basin since the construction of flood control, irrigation, and hydroelectric projects during the 19 th and 20 th centuries, culminating with the construction of Hells Canyon Dam (river kilometer [rkm] 398) in 1967. Seven large watersheds in the blocked area of the basin are under consideration for Pacific salmon reintroduction. The primary objective of this study was to identify and characterize potential reintroduction sites with high-quality rearing and spawning habitat for Chinook salmon ( Oncorhynchus tshawytscha ) and steelhead ( O. mykiss ) upstream of the Hells Canyon Complex in Idaho, Oregon, and Nevada, USA. We created and tested habitat models to predict rearing presence/absence, rearing abundance, and spawning presence/absence using channel morphology, hydrology, and stream temperature variables obtained from regional peer-reviewed datasets. Habitat models were trained with salmonid presence and abundance records collected in the lower Snake River basin (downstream of Hells Canyon Dam), where anadromous fish can currently access, from 1993 to 2011. Model performance was tested with set-aside data comprised of randomly selected reaches and independent environmental DNA data. An index model was created in the middle Snake River basin for each species by combining results from the habitat models. Modeling covariates differed by species and life stage and included different combinations of August stream temperature, summer flow, channel slope, and quadratic terms for temperature and slope. The habitat models predicted high versus low Chinook salmon and steelhead probability and abundance with 66% to 85% accuracy depending on species and life stage. The index models predicted a total of 2,887 km of Chinook salmon habitat and 2,434 km of steelhead habitat in the blocked area. The three basins in the blocked area with the greatest amount of predicted habitat were the Powder River, South Fork Payette River, and North Fork Payette River for Chinook salmon, and the Powder River, South Fork Boise River, and South Fork Payette River for steelhead. The modeling approach presented here is complementary to other planning efforts for Chinook salmon and steelhead reintroduction in the blocked area of the Snake River basin, and similar approaches may be useful for reintroduction planning in other systems.

Idaho, Nevada, Oregon, Utah, Washington, Wyoming↗

USGS1984

Estimating prey size and number in crayfish-eating snakes, genus Regina

Snakes of the genus Regina feed almost exclusively on crayfish. The paired, symmetrical gastroliths of crayfish are not digested and are detectable from x-rays of the snake. Gastrolith length is directly proportional to carapace length and can be obtained from x-rays. Carapace length can be converted to kcal of ingested energy. Using these relationships and repeated captures of radio-telemetered Regina, estimates of food consumption and energy intake by freeliving snakes are feasible. New information on prey selectivity, feeding behavior, and predator-prey size relations in Regina grahami and R. septemvittata are presented and compared with similar data for other snakes.

Herpetologica↗

USGS2003

Thermal exposure of juvenile fall chinook salmon migrating through a lower Snake River Reservoir

Impoundment of the Snake River, Washington, has resulted in high water temperatures and late seaward migration of juvenile fall chinook salmon during summer months. To determine if juvenile fall chinook salmon are exposed to temperatures higher than the upper incipient lethal, we tagged groups of fish with temperature-sensing radio tags and tracked them in Little Goose Reservoir on the Snake River during the summers of 1998 and 1999. Spatial and temporal patterns of the reservoir's thermal environment were described using a bathythermograph. Little Goose Reservoir was generally homothermic, and temperatures selected by fish were typically not significantly different from mean water temperatures. No areas of thermal refugia existed in Little Goose Reservoir. Thermal exposure was most influenced by fish residence time in the reservoir within each year and by temperature differences between years. Current augmentation of Snake River summer flows with cold-water releases from Dworshak Dam in Idaho reduces the thermal exposure of juvenile fall chinook salmon by lowering water temperatures up to 4??C and may therefore increase their survival. Continued flow augmentation using water from Dworshak Reservoir may be the only mechanism to meet the temperature standard for the lower Snake River.

Idaho, Oregon, Washington↗

USGS2012

Seasonal use of shallow water habitat in the Lower Snake River reservoirs by juvenile fall Chinook salmon

The U.S. Army Corps of Engineers (COE) is preparing a long term management plan for sediments that affect the authorized project purposes of the Lower Granite, Little Goose, Lower Monumental, and Ice Harbor reservoirs (hereafter, the lower Snake River reservoirs), and the area from the mouth of the Snake River to Ice Harbor Dam. We conducted a study from spring 2010 through winter 2011 to describe the habitat use by juvenile Chinook salmon within a selected group of shallow water habitat complexes (< 6 m deep) in the lower Snake River reservoirs to help inform the long-term plan. Natural fry and parr were present within all four shallow water habitat complexes that we studied from early spring through early summer, and parr ( = 40,345 ± 18,800 [error bound]) were more abundant than fry ( = 24,615 ± 5,701). Water < 2 m deep was highly used for rearing by natural fall Chinook salmon subyearlings (fry and parr combined; hereafter natural subyearlings) based on duration of use and relative group abundances during spring and summer, whereas the 2–6 m depth interval was more highly used by migratory hatchery fall Chinook salmon subyearlings and spring, summer, and fall Chinook salmon yearlings. Overall mean spring-summer apparent density of natural subyearlings was 15.5 times higher within the < 2 m depth interval than within the 2–6 m depth interval. Density of natural subyearlings also decreased as the distance a given shallow water habitat complex was located from the riverine spawning areas increased. Reservoir-type juveniles (or fish likely destined to become reservoir-type juveniles) were present in the lower Snake River reservoirs from fall 2010 through winter 2011; however, use of shallow water habitat by reservoir-type juveniles was limited during our study. We only collected 38 reservoir-type juveniles in shallow water habitat sites in beach and lampara seines during the fall. Radiotelemetry data revealed that though many tagged fish passed shallow water habitat sites, relatively few fish entered them and the median time fish spent within a given site was less than 1.4 h. Fish located by mobile tracking away from study sites were pelagically oriented, and generally not found over shallow water or close to shore. The findings in this report: (1) support the selection of natural fall Chinook subyearlings as the indicator group for determining the potential benefits of using dredge spoils to create shallow water habitat, (2) provide evidence for shallow water habitat use by natural subyearlings, (3) provide evidence against large-scale use of shallow water habitat by reservoir-type juveniles, (4) suggest that the depth criterion for defining shallow water habitat (i.e., < 6 m deep) warrants reconsideration, and (5) provide guidance for when to dredge and create shallow water habitat. Future research on habitat preference, feeding ecology, the food web, and intra-specific competition would help to better inform the long-term management plan.

Report↗

USGS1978

Regional gravity and magnetic anomalies in the eastern Snake River Plain, Idaho

Over the eastern Snake River Plain, the Bouguer gravity anomaly and the magnetic intensity are, in general, high. In detail, both the gravity and the magnetic anomalies are a complex of highs and lows, in contrast to the simpler anomalies over the western Snake River Plain. The broad gravity high associated with the eastern Snake River Plain cannot be produced by a dense mass at shallow depth under the plain, but must be produced either by a deep feature under the plain or by a broader, shallower feature extending well beyond the plain. The high could be produced by a thinning of the crust under the plain by 4.5 to 7 kilometers. The data suggest that the Cenozoic rocks of the plain are underlain by rocks that have density and magnetization similar to the density and magnetization of the pre-Cenozoic rocks north and south of the plain. The data do not suggest rifting of the upper crust such as is inferred for the western Snake River Plain. The plain is in approximate isostatic equilibrium with adjoining regions to the north and south and thus contrasts with the adjoining areas where the basin-and-range topography is not in isostatic equilibrium. The local gravity anomalies on the plain are probably produced by variations in the thickness of Cenozoic rocks, but the wavelength of the anomalies is about twice that of the basin-and-range structural features in areas adjoining the plain. The gravity expression of basin-and-range structural features does not extend far onto the plain. Magnetic anomalies on the plain are produced by Cenozoic volcanic rocks.

Idaho↗

USGS2009

Audiomagnetotelluric investigation of Snake Valley, eastern Nevada and western Utah

Audiomagnetotelluric (AMT) data along four profiles in western Snake Valley and the corresponding two-dimensional (2-D) inverse models reveal subsurface structures that may be significant to ground-water investigations in the area. The AMT method is a valuable tool for estimating the electrical resistivity of the earth over depth ranges from a few meters to less than one kilometer. The method has the potential to identify faults and stratigraphy within basins of eastern Nevada, thereby helping define the hydrogeologic framework of the region. As support for an exploratory well-drilling and hydraulic-testing program, AMT data were collected using a Geometrics Stratagem EH4 system along four profiles that extend roughly east-west from the southern Snake Range into Snake Valley. The profiles range from 3 to 5 kilometers in length, and station spacing was 200 to 400 meters. Two-dimensional inverse models were computed using the data from the transverse-electric (TE), transverse-magnetic (TM), and combined (TE+TM) mode using a conjugate gradient, finite-difference method. Interpretation of the 2-D AMT models defines several faults, some of which may influence ground-water flow in the basins, as well as identify underlying Paleozoic carbonate and clastic rocks and the thickness of basin-fill sediments. These AMT data and models, coupled with the geologic mapping and other surface geophysical methods, form the basis for identifying potential well sites and defining the subsurface structures and stratigraphy within Snake Valley.

Nevada, Utah↗

USGS2007

Size-based trends and management implications of microhabitat utilization by Brown Treesnakes, with an emphasis on juvenile snakes

The brown treesnake ( Boiga irregularis , or BTS), a costly invasive species, has been the subject of intensive research on Guam over the past two decades. The behavior and habitat use of hatchling and juvenile snakes, however, remain largely unknown. We used a long-term dataset of BTS captures (N = 2,415) and a dataset resulting from intensive sampling within and immediately around a 5-ha fenced population (N = 2,541) to examine habitat use of BTS. Small snakes were almost exclusively arboreal and that they appeared to prefer tangantangan ( Leucaena leucocephala ) habitats. In contrast, large snakes used arboreal and terrestrial habitats in roughly equal proportion, and were less frequently found in tangantangan. Among snakes found in trees, there were no clear size-based preferences for certain heights above ground, nor for size-based choice of perch diameters. We discuss these results as they relate to management and interdiction implications for brown treesnakes on Guam and in potential incipient populations on other islands.

Conference Paper↗

USGS2017

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River Fall Chinook Salmon ESU, 1/1/2016 - 12/31/2016

The portion of the Snake River fall Chinook Salmon Oncorhynchus tshawytscha ESU that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 1992–2016 in association with U.S. Endangered Species Act recovery efforts and other federally mandated actions. This annual report focuses on (1) numeric and habitat use responses by natural- and hatchery-origin spawners, (2) phenotypic and numeric responses by natural-origin juveniles, and (3) predator responses in the Snake River upper and lower reaches as abundance of adult and juvenile fall Chinook Salmon increased. Spawners have located and used most of the available spawning habitat and that habitat is gradually approaching redd capacity. Timing of spawning and fry emergence has been relatively stable; whereas the timing of parr dispersal from riverine rearing habitat into Lower Granite Reservoir has become earlier as apparent abundance of juveniles has increased. Growth rate (g/d) and dispersal size of parr also declined as apparent abundance of juveniles increased. Passage timing of smolts from the two Snake River reaches has become earlier and downstream movement rate faster as estimated abundance of fall Chinook Salmon smolts in Lower Granite Reservoir has increased. In 2016, we described estimated the consumption rate and loss of subyearlings by Smallmouth Bass before, during, and after four hatchery releases. Before releases, Smallmouth Bass consumption rates of subyearling was low (0–0.36 fish/bass/d), but the day after the releases consumption rates reached as high as 1.6 fish/bass/d. Bass consumption in the upper portion of Hells Canyon was high for about 1–2 d before returning to pre-release levels, but in the lower river consumption rates were reduced but took longer to return to pre-release levels. We estimated that most of the subyearlings consumed by bass were of hatchery origin. Smallmouth Bass predation on subyearlings is intense following a hatchery release, but the predation pressure is relatively short-lived as subyearlings quickly disperse downstream. This information will allow us to better estimate subyearling loss to predation from our past efforts at time intervals less than 2 weeks. These findings coupled with stock-recruitment analyses presented in this report provide evidence for density-dependence in the Snake River reaches and in Lower Granite Reservoir that was influenced by the expansion of the recovery program. The long-term goal is to use the information covered here in a comprehensive modeling effort to conduct action effectiveness and uncertainty research and to inform Fish Population, Hydrosystem, Harvest, Hatchery, and Predation and Invasive Species Management RM&E.

Snake River basin↗

USGS2021

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River Fall Chinook salmon ESU

The portion of the Snake River fall Chinook salmon Oncorhynchus tshawytscha evolutionary significant unit (ESU) that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 1992–2020 in response to U.S. Endangered Species Act recovery efforts and other federally mandated actions. This annual report focuses on changes in population abundance and habitat use by natural- and hatchery-origin spawners. Typically, we also report on population attributes of natural-origin juveniles, but data on juveniles were not collected in 2020 due to Covid-19. Spawners have located and used most of the available spawning habitat and that habitat is gradually approaching the point that no more redds can be supported. Timing of spawning and fry emergence have been relatively stable, but effects of density dependence are evident in juvenile life stages. Apparent abundance of juvenile fall Chinook salmon has increased and we noted the following changes: parr dispersal from riverine rearing habitat into Lower Granite Reservoir has become earlier; growth rate (g/d) and dispersal size of parr has declined; and passage timing of smolts from the two Snake River reaches has become earlier and downstream movement rate has increased. These findings coupled with stock-recruitment analyses presented in this report provide evidence for density-dependence in the Snake River reaches and in Lower Granite Reservoir resulting from the expansion of the recovery program. The long-term goal is to use this information in a comprehensive modeling effort to conduct action-effectiveness and uncertainty research and to inform Fish Population, Hydrosystem, Harvest, Hatchery, and Predation and Invasive Species Management Research, Monitoring, and Evaluation (RM&E) programs. In 2020, the U.S. Geological Survey (USGS) focused survey efforts in the Snake River on deepwater redd searches and fish collection for parentage-based tagging (PBT) analyses. We use a boat-mounted underwater video camera to count 170 deepwater redds at 19 of the 28 sites surveyed. Redd depths averaged 4.2 m. We collected genetic samples from 297 live fall Chinook salmon and 16 carcasses at 44 unique geographic locations that spanned 89 river kilometers. Seventy-two fish were recovered at Eureka Bar (rkm 307.1) and Corral Creek (rkm 349.7), which accounted for 23% of all collected fish in 2020. Most (238 fish) post-spawned salmon were collected from early to mid-November just after peak spawning. A summary of 2019 PBT results can be found in Appendix A.1. In 2020, we PIT tagged subyearling fall Chinook salmon in the Clearwater River to obtain population and growth data. In the Clearwater River, we tagged 2,192 subyearlings and recaptured 79 (3.6%) fish in the river and 187 fish (78 tagged by the U.S. Geological Survey, 109 tagged by the Nez Perce Tribe) at Lower Granite Dam during October which provided information for growth estimation. Within riverine habitats, growth in both length and mass were higher for fish tagged with 8-mm tags than with 9- and 12-mm tags. Estimated growth in length and mass of subyearlings was generally lower in Lower Granite Reservoir than in riverine habitats. Information on prey resources and juvenile fall Chinook salmon prey consumption was collected to better understand the growth opportunity of late-migrating fish in Lower Granite Reservoir. Zooplankton and surface drifting prey were collected from three reservoir locations from July through October during 2019 and 2020. Fall Chinook salmon diet data were collected from angled fish using gastric lavage. Cladocera and Copepoda were the most abundant zooplankton taxa collected while Diptera was the most common invertebrate taxon collected in surface drift samples. Totals of 49 and 94 juvenile fall Chinook salmon were captured in 2019 and 2020, respectively, and most fish were caught in the lower reach of the reservoir in October of each year. Juvenile fall Chinook salmon consumed mainly dipterans in July and October 2019 and mainly Daphnia during August–October in 2020. Fish showed selection mainly for dipterans in 2019 but strong selection for Daphnia during October 2020. Stomach fullness values were relatively low (<1.1%) during both years. Results show that prey resources are adequate in Lower Granite Reservoir to support positive fish growth during late summer and early autumn.

Idaho, Oregon, Washington↗