Search USGSSearch

SEARCH · Search USGS

Results for “Rivers Research and Applications”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 163 records · Page 9Linked to original sources

Influence of river discharge on grass carp occupancy dynamics in south-eastern Iowa rivers

Despite the longstanding presence of grass carp Ctenopharyngodon idella in the Upper Mississippi River (UMR) watershed, information regarding their populations remains largely unknown, in part because capture is difficult. Occupancy models are a popular wildlife assessment tool to account for imperfect detections but have been slow to be adopted in fisheries. Herein, we used occupancy modelling to evaluate the influence of two environmental covariates (river discharge and water temperature) on grass carp occupancy, extinction, colonization, and detection at nine sites within south-eastern Iowa rivers from April to October 2014 and 2015. Grass carp were detected at least once at all but one site. The most parsimonious model indicated that grass carp colonization probability increased from 0.15 to 0.67 with increases in river discharge. In contrast, occupancy (0.20), extinction (0.29), and detection (0.50) probabilities were temporally constant. Models indicated that water temperatures did not influence grass carp extinction or colonization probabilities relative to river discharge. Cumulative grass carp detection probability approached 1.0, whereas conditional occupancy estimates were less than 0.1 when using five or more sampling transects. The use of a robust design occupancy model allowed us to estimate site occupancy rates of grass carp corrected for imperfect detections, while demonstrating the importance of river discharge for site colonization. These results can be used to assess the distribution of a cryptic fish while helping to guide grass carp sampling and removal efforts.

Iowa

Spatial organization of fish diversity in a species-rich basin

Many abiotic and biotic environmental characteristics in river basins show spatial gradients from river source to main stem. We examined the spatial organization of fish within the Duck River Basin to document patterns in diversity that could help guide conservation strategies relevant to controlling the detrimental effects of basin development. In all, over 0.33 million fishes representing 145 species and 18 families, including 9 non-native species, were collected in 207 samples distributed throughout the basin. Main stem sites with large catchment areas supported more fish diversity than smaller sites in tributaries. Moreover, rare species were most common in the main stem and ubiquitous species in tributaries. The spatial organization of species assemblages was mostly nested, as assemblages appeared to disassemble in an upstream direction from main stem sites and confluences. These findings suggest that fish conservation efforts might emphasize main stem segments and confluences that support higher biodiversity including the rare species often most in need of protection. The main stem can support the populations needed to recolonize tributaries and rescue populations that might periodically go extinct after droughts or other major disturbances. In tributaries, conservation of species assemblages may focus on managing between-patch connectivity via corridor maintenance or creation.

Tennessee

The influence of depth and velocity on age-0 Scaphirhynchus sturgeon prey consumption: Implications for aquatic habitat restoration

After the pallid sturgeon ( Scaphirhynchus albus ) was listed as endangered in 1990, a variety of management actions focusing on early life history needs have been implemented to aid species recovery. Given the scarcity of age-0 pallid sturgeon, managers and scientists have relied on sympatric congeners to evaluate the effectiveness of management actions in the short term; however, increased understanding of habitat requirements for age-0 Scaphirhynchus sturgeon is still needed to appropriately focus management efforts. Recently, a lack of food-producing and foraging habitats were proposed as potential limiting factors for pallid sturgeon, and the purpose of this study was to evaluate the current definition of these habitats at multiple spatial scales using data from age-0 Scaphirhynchus sturgeon (shovelnose sturgeon [ Scaphirhynchus platyrhynchus ] or hybrid [shovelnose sturgeon x pallid sturgeon]). Results showed the water depths and velocities that currently define age-0 pallid sturgeon foraging habitat had little effect on age-0 Scaphirhynchus sturgeon prey consumption. Similar results occurred when evaluating the relationship between prey consumption and food-producing habitat present 10, 20, and 30 days before capture. Assuming that individuals captured during this study were a valid surrogate, these results suggest that increasing foraging and food-producing habitat as defined by the current depth and velocity criteria is unlikely to result in the desired benefits of increased growth and survival of age-0 pallid sturgeon.

Missouri

Bidirectional connectivity via fish ladders in a large Neotropical river

The conservation of potamodromous species worldwide has been threatened by the loss of longitudinal connectivity caused by dams intercepting large rivers. One environmental management strategy for reestablishing connectivity is providing passage through fish ladders. However, ladders in Neotropical rivers have been described as ascending one-way routes. We analyzed the movements of Prochilodus lineatus through a fish ladder at a large dam – Porto Primavera – in the heavily impounded Upper Paraná River, Brazil, to determine whether the ladder connected habitats downstream and upstream of the dam, in both directions. A total of 1,419 specimens of P. lineatus were PIT-tagged in areas downstream and upstream of the dam, and continuously monitored for 4 years. We documented bidirectional movements of P. lineatus through the fish ladder. Many individuals repeated these movements annually; one individual as many as six times. Thus, our study suggests the Porto Primavera fish ladder contributes to habitat connectivity, bidirectional passage, and conservation of P. lineatus. Our results deviate from the perception that fishways are ineffective in Neotropical rivers. Our data suggest that fishways can restore the bidirectional connectivity denied to some Neotropical species, and until the services of dams are no longer needed, environmental management through fish ladders may continue to be part of broader conservation strategy designed to preserve native fauna.

Paraná River Basin

Quantifying hydrologic alteration in an area lacking current reference conditions—The Mississippi Alluvial Plain of the South-Central U.S.

To better understand the effects of hydrologic alteration as they relate to human and biological needs within the Mississippi Alluvial Plain of the south-central United States, the quantification of hydrologic alteration is required. Quantifying hydrologic alteration in the Mississippi Alluvial Plain is particularly difficult because of the lack of current reference, or even relatively undisturbed, U.S. Geological Survey (USGS) streamflow-gaging stations. Water withdrawals for agriculture in the form of weirs, dams, channelization and other forms of regulation within the Mississippi Alluvial Plain increased substantially beginning around 1960 suggesting that streamflow is substantially altered after this time period. To overcome the lack of stations that exist in the present that are unaffected by anthropogenic activities (or current reference stations), historical streamflow data were used to estimate what streamflow would be in the present without anthropogenic influence (or current reference conditions). These data, when combined with current streamflow information collected by the USGS in south and eastern Arkansas, southwest corner Kentucky, Louisiana, western Mississippi, southeastern corner Missouri, extreme western Tennessee, and extreme southeastern Texas were used to assess the level of hydrologic alteration within the study area.

Arkansas, Kentucky, Louisiana, Mississippi, Missou

A comparison of riparian vegetation sampling methods along a large, regulated river

Monitoring riparian vegetation cover and species richness is an important component of assessing change and understanding ecosystem processes. Vegetation sampling methods determined to be the best option in other ecosystems (e.g., desert grasslands and arctic tundra) may not be the best option in multilayered, species rich, heterogeneous riparian vegetation. This study examines the strengths and weaknesses of two common vegetation sampling methods, line‐point intercept and ocular quadrat estimates. Permutational analysis of variance analyses indicate that cover estimates among observers did not differ significantly for either line‐point intercept or ocular quadrat estimates. Line‐point intercept cover estimates resulted in lower coefficient of variation among observers than ocular quadrat estimates, but the ocular quadrat estimates recorded significantly more species. Line‐point estimates of cover were generally larger than ocular quadrat estimates. Ocular quadrat estimates are appropriate when assessment of richness is important, in areas with heterogeneous geomorphology and hydrology where fine‐scale measurements are most useful, and in areas where continuous sampling transects are impracticable. Line‐point intercept estimates are useful when minimum variation among observers is necessary, continuous transects are logical and practicable for the sampling area, woody cover does not present a logistical complication, and species richness is not a priority.

River Research and Applications

Dam effects on bedload transport on the upper Santa Ana River, California, and implications for native fish habitat

Dams disrupt the flow of water and sediment and thus have the potential to affect the downstream geomorphic characteristics of a river. Though there are some well‐known and common geomorphic responses to dams, such as bed armouring, the response downstream from any particular dam is dependent on local conditions. Herein, we investigate the response of the upper Santa Ana River in southern California, USA, to the construction of a large dam at the transition from mountains to valley, using calculations of bedload transport capacity on the mainstem below the dam and for major tributaries. Approximate sediment budgets were constructed for downstream reaches to estimate deposition and erosion rates for sand, gravel, and cobble particle sizes. Our results indicate that the classical response of bed armouring and erosion is likely limited to a short reach immediately below the dam. Farther downstream, though transport capacity is reduced by flow regulation by the dam, the channel reaches are likely to remain depositional but with reduced deposition rates. Persistent deposition, as opposed to erosion, is the result of the replenishment of flow and sediment supply by large downstream tributaries. In addition, the calculations indicate that the composition of the bed is unlikely to change substantially in downstream reaches. A Monte Carlo approach was employed to estimate the uncertainty in the sediment budget predictions. The impacts of the dam on the geomorphic character of the river downstream could have implications for native fish that rely on coarse substrate that supports their food base.

California

Riverine turtles select habitats maintained by natural discharge regimes in an unimpounded large river

Turtle populations are imperiled worldwide, but limited ecological information from unaltered systems hampers science‐based management and conservation of some species, especially riverine turtles such as the spiny softshell ( Apalone spinifera ). We therefore investigated movements and spatial habitat selection of 54 A . spinifera in 633 river kilometres (rkm) of the least‐altered river in the conterminous United States—the Yellowstone River in Montana—from 2005 to 2009. Movement rates and home ranges were smaller than in fragmented, altered river systems because nesting and overwintering habitats were common and in close proximity. Habitat selection also differed. A . spinifera in the Yellowstone River overwintered in unaltered bluff pools and summered in complex reaches with side channels, islands, and diverse habitats. However, those in the highly altered Missouri River used deep alluvial pools for overwintering and flooded, inundated, or backwatered tributary mouths in spring and summer. Importantly, selected habitats in both rivers were functionally similar, including complex river reaches (with multiple channels, islands, and diverse habitats) and natural pool types. Unfortunately, these are the very habitats that are limited in rivers affected by dams, bank stabilization, and channelization. Therefore, preservation of natural and diverse riverine habitats—and the fluvial dynamics that maintain them—may enhance conservation of A . spinifera in large rivers.

Montana, North Dakota, South Dakota, Wyoming

Long-term (37 years) impacts of low-head dams on freshwater shrimp habitat connectivity in northeastern Puerto Rico

Freshwater migratory shrimp in Puerto Rico depend on watershed connectivity, from stream headwaters to the ocean, to complete their life cycle. Moreover, shrimp populations in different watersheds are known to be connected in an island-wide metapopulation. However, low-head dams paired with water intakes on streams draining the El Yunque National Forest (EYNF) reduce streamflow. Here, we examine the cumulative effects of low-head dams on shrimp habitat connectivity over 37-years across seven EYNF watersheds. We calculate total and refugia habitat connectivity (where refugia habitat is defined as predator-free upstream reaches above waterfalls > 5 m in height) at a monthly time step using a habitat-weighted index of longitudinal riverine connectivity, which incorporates location and operation of water intakes and streamflow variability. Findings indicate total and refugia habitat connectivity declined over 37 years (by 27% and 16%, respectively) as additional water intakes have been placed in lower reaches of watersheds. On a monthly time-step, the proportion of streamflow withdrawn has the largest effect on habitat connectivity, with the result that connectivity is ~17% lower during drought years than in non-drought years and ~7% lower in dry compared to wet seasons. Our analysis of this long-term dataset highlights how cumulative effects of low-head dams paired with water intakes have reduced shrimp habitat connectivity. These results underscore the importance of reducing existing withdrawal rates in EYNF, and locating intakes where effects on connectivity are minimal, if conserving shrimp habitat is a management objective.

Puerto Rico

Influence of a high-head dam as a dispersal barrier to fish community structure of the Upper Mississippi River

In river systems, high‐head dams may increase the distance‐decay of fish community similarity by creating nearly impermeable dispersal barriers to certain species from upstream reaches. Substantial evidence suggests that migratory species are impacted by dams, and most previous studies in stream/river networks have focused on small streams and headwaters. Here, we assess whether a high‐head dam (Lock and Dam 19; LD 19) on a large river, the Upper Mississippi River (UMR), substantially alters fish community structure relative to variability expected to occur independent of the dam's effect as a fish dispersal barrier. Using fish catch per unit effort data, we modelled the distance‐decay function for the UMR fish community and then estimated the similarity that would be expected to occur across LD19 and compared it with measured similarity. Measured similarity in the fish community above and below LD19 was close to the expected value based on the distance‐decay function, suggesting LD19 does not create an abrupt transition in the fish community. Although some migratory fish species no longer occur above LD19 (e.g., skipjack herring, Alosa chrysochloris ), these species do not occur in high abundance below the dam and so do not drive variation in fish community structure. Instead, much of the variation in species structure is driven by the loss/gain of species across the latitudinal gradient. Lock and Dam 19 does not appear to be a clear transition point in the river's fish community, although it may function as a meaningful barrier for particular species (e.g., invasive species) and warrant future attention from a management perspective.

Illinois, Iowa Minnesota, Missouri, Wisconsin

Associations between riparian plant morphological guilds and fluvial sediment dynamics along the regulated Colorado River in Grand Canyon

Effects of riparian vegetation on fluvial sediment dynamics depend on morphological traits of the constituent species. Determining the effects of different morphological guilds on sedimentation rates, as influenced by multiple aspects of dam operations, can help identify viable strategies for streamflow and vegetation management to achieve riparian resource goals. Plants of increasing size and branching density or complexity have been found to have greater effects on sedimentation in free‐flowing systems; however, this relationship could differ in regulated rivers. We tested the hypothesis that plant guilds of increasing height and branching complexity would be positively associated with sedimentation rates on 23 sandbars deposited in zones of recirculating flow (eddies) along the Colorado River in Grand Canyon. We used an image‐based vegetation classification and digital elevation models from annual topographic surveys to track associations between six plant morphological guilds and topographic change over 5 years. Vegetation had significant associations with deposition after accounting for geomorphic setting, but the ordinal guild scale was not positively correlated with deposition magnitude. Instead, low‐statured rhizomatous and herbaceous guilds were particularly effective at capturing sediment in the separation zone of sandbars, whereas tall herbs and large shrubs were most effective at capturing sediment in reattachment zones. These nuanced interactions between geomorphic position and morphological guild may be a direct consequence of flow regulation through modifications to physical deposition and erosion processes. Flow regulation may also select for a narrow subset of morphological guilds, reducing the diversity of vegetation feedbacks on sedimentation and emphasizing geomorphic drivers.

Arizona

An interactive decision-making tool for evaluating biological and statistical standards of migrating fish survival past hydroelectric dams

Quantifying the downstream survival of migrating fish past dams is critical for conservation efforts. Regulators require assessments of survival as a condition of operation. Failure to meet an established survival standard may result in required operational or costly structural changes at a facility. Establishing the survival standard, as well as the rules of assessment, is a point of contention between regulators and operators. Management goals are based on biological criteria, but there are inherent statistical and probabilistic trade-offs when choosing a standard value and the method for assessment. We make a distinction between a “biological” goal (the conservation goal) and a “statistical” standard (a function of the biological goal, sample size, assessment method, and years of consecutive evaluation). An effective statistical standard maximizes true positives (passing the standard when the biological goal is being met) and true negatives (failing the standard when the goal is not being met), while minimizing false negatives and false positives. We explored the effects of sample size, true survival, and assessment methods on the probability of passing different statistical standards by simulating survival studies (simulating mark-recapture experiments). We observed a strong influence of assessment methods on the probability of making the right decision (true positive or true negative), especially when sample size, and recapture probability was low. As a support tool, we developed an interactive user interface to explore specific scenarios, and to aid communication among decision-makers.

River Research and Applications

Seasonal selection of riverine habitat by Spotted Bass and Shorthead Redhorse in a regulated river in the Midwestern U.S.

Riverine fish populations depend on habitats supporting their resource and life history needs. Dynamic streamflow caused by river regulation or natural events influences the distribution of downstream habitat characteristics. Through studying habitat selection, we can identify the most utilized and valuable habitats for the success of native fishes. We determined seasonal habitat selection of two common, native fish species on the Osage River downstream of Bagnell Dam, a hydroelectric dam in central Missouri, from April 2016 to June 2017 using radio telemetry. Spotted Bass ( Micropterus punctulatus ) are nest-guarders, sight feeders, and habitat generalists, whereas Shorthead Redhorse ( Moxostoma macrolepidotum ) are fluvial dependent, migratory, and benthic feeders. Bayesian discrete choice analyses determined that both species selected particular water depth, velocity, and presence of submerged cover in some or all seasons, even as available habitat changed. Spotted Bass selected water depths <4.0 m near submerged cover during all seasons, low velocity during spring and summer, and near-bank habitat in all seasons except spring. Shorthead Redhorse used fast flowing habitat during spring, 0.4–1.1 m/s velocity during summer, and low velocity in fall and winter (0.1–0.5 m/s). Shorthead Redhorse used submerged cover in all seasons except summer and selected specific ranges of depth within spring (2.4–4.4 m), summer (3.3–6.7 m), and winter (1.1–2.3 m). Our findings suggest that maintaining habitats with cover and diverse water depths and velocities, particularly both low and high velocity habitats during spring, may promote resilience by providing beneficial habitats for native fishes.

Missouri

Bidirectional connectivity via fish ladders in a large Neotropical river: Response to a comment

In a recent article, we described fitting electronic tags to the fish Prochilodus lineatus to document how a fishway connected aquatic habitats downstream and upstream of a major dam. Moreover, given that tagged fish remained upstream or downstream for periods extending months and years before returning to the fishway, and that observed patterns of passage were consistent with seasonal migratory cycles, and building on existing literature, we speculated that the fishway allows fish access to spawning habitats upstream and feeding habitats downstream. Our interpretation of the movement data resulted in several comments from Pelicice, Pompeu, and Agostinho (2020) and they outline various reasons by which, in their opinion, some of our conclusions may be mistaken. Their critique is threefold. First, they argue that the percentage of fish attracted into the fishway is too low to consider the fishway an effective link between the reservoir and the river downstream. We contend that without estimates of population size it is impossible to judge if 28% passage is “limited”; conceivably, the absolute number of fish passed may still be enough to maintain a viable population. Second, they assert that because receivers were located only in the fishway it is unknown if fish that used the fishway remained near the dam, or if they continued their migration. We counter with a brief literature review that documents P. lineatus migrating through reservoirs and spawning in tributaries. Third, they advocate for a broader conservation perspective and for additional research. We agree and, in the article, had already expressed this view that fishways are only a temporary fix and that we support their use only as an element of a broader environmental management package. We also agree with the need for more research but argue that procrastinating on conservation action may not be wise because we do not know if the research will be done, how long it will take, or what the cost may be of waiting.

Parana River

Assessing the potential for spectrally based remote sensing of salmon spawning locations

Remote sensing tools are increasingly used for quantitative mapping of fluvial habitats, yet few techniques exist for continuous sampling of aquatic organisms, such as spawning salmonids. This study assessed the potential for spectrally based remote sensing of salmon spawning locations (i.e., redds) using data acquired from unmanned aircraft systems (UAS) along a large, gravel‐bed river. We developed a novel, semi‐automated approach for detecting salmon redds by applying machine learning classification and object detection techniques to UAS‐based imagery. We found that both true colour (RGB) and hyperspectral imagery could be used to identify salmon redds, though with varying degrees of accuracy. Redds were mapped with accuracies of ~0.75 from RGB imagery using logistic regression and support vector machines (SVM) classification algorithms, but this type of data could not be used to identify redds using Object‐based Image Analysis (OBIA). The hyperspectral imagery was more useful for mapping salmon redds, with accuracies greater than 0.9 for both logistic regression and SVM classifiers; OBIA of the hyperspectral data resulted in redd detection accuracies up to 0.86. The hyperspectral imagery also yielded complementary physical habitat information including water depth and substrate composition, which we quantified on the basis of a spectrally based chlorophyll absorption ratio. Overall, the hyperspectral imagery more effectively identified salmon spawning locations than RGB images and was more conducive to the classification approaches we evaluated. Each type of remotely sensed data had advantages and limitations, which are important for potential users to understand when incorporating UAS‐based data collection into river ecosystem studies.

California

River channel response to dam removals on the lower Penobscot River, Maine, United States

Most geomorphology studies of dam removals have focused on sites with appreciable quantities of stored sediments. There is great interest in channel responses to sediment releases because of potential effects on aquatic and riparian habitats and human uses of these areas. Yet, behind many dams in the Northeast U.S. and other regions of the world only minor accumulations of sediment are present because of small impoundments, run‐of‐river dam design and management (inflow ≈ outflow), low watershed sediment yield, and/or channel beds dominated by coarse sediment and/or bedrock. The two lowermost dams on the Penobscot River in Maine, United States, removed in 2012–2013, exemplified those conditions. Great Works and Veazie dams were about 6 and 10 m high, respectively. Pre‐project geophysical surveys showed coarse substrates dominated the reservoir beds and little sediment was stored in either impoundment—functions of reach geology, late Quaternary history, and upstream dams. Repeat cross‐section surveys in each impoundment, as well as the upstream and downstream reaches, were completed from 2009 to 2015 to evaluate channel morphology responses to the removals. Bed‐sediment grain size and turbidity were also measured to characterize changes in bed texture and suspended sediment. Pre‐ and post‐removal survey comparisons confirmed the expectation that bed elevations, channel shapes, and channel positions would not change substantially. Changes were often within, or close to, our estimated random measurement error. Our study shows that large‐scale physical changes are likely to be minimal when impoundments storing relatively little sediment are removed from erosion‐resistant streambeds. Many dams eligible for removal have these characteristics, making these observations an important case study that is largely unrepresented in the dam removal literature.

Maine

Opportunities and challenges for restoration of the Merced River through Yosemite Valley, Yosemite National Park, USA

Successful river restoration requires understanding and integration of multiple disciplinary perspectives, including evaluations of past and ongoing watershed processes, local geomorphic response, and impacts unique to human activity. Nowhere is this more apparent than along the Merced River in Yosemite National Park, USA, where both an outstanding natural landscape and the consequences of over a century of human disturbances continue to interact. An intact upstream watershed highlights the importance here of local impacts on geomorphic response. Incision and the resulting decoupling of the channel from its adjacent late-Holocene floodplain are consequences of reduced channel roughness, likely from de-snagging the river, and instream gravel mining in the 19th and early 20th century. Riparian-zone disturbance by visitor use has damaged riparian vegetation and soils, inducing channel widening. Revetments and channel-spanning bridges, the latter being visible and oft-cited impacts to fluvial processes, have distorted the natural evolution of meanders and induced local channel narrowing. The historical rate of sediment export from Yosemite Valley has greatly exceeded replenishment from upstream and lateral sources, creating a deficit that now inhibits recovery via passive restoration of more natural channel form and function. Climate change may amplify now-diminished fluvial processes but also exacerbate the rate of sediment export. These conditions, reflecting a complex intersection of geologic history, modern geomorphic processes, and human interactions, demonstrate how a limited influx of sediment coupled with intensive human use can have long-term consequences for riverine conditions, restoration opportunities, and social engagement with the riverine landscape.

California

Effects of dewatering on behavior, distribution, and abundance of larval lampreys

Anthropogenic dewatering of aquatic habitats can cause stranding and mortality of burrowed larval lampreys; however, the effects of dewatering have not been quantified. We assessed: (a) changes in spatial distribution, abundance, and emergence of larvae dewatered at Leaburg Reservoir (OR); (b) emergence and mortality of larvae dewatered in a laboratory; and (c) bias, precision, and interpretation of field results by simulation and modeling of laboratory results. In the field, we examined the distribution, abundance (by N‐mixture model), and density of larvae by electrofishing at randomly selected sites before dewatering and after refill, and assessed the emergence rate by observation and excavation during dewatering. Due to dewatering in the field, about 42% of larvae emerged and spatial distribution changed toward sites dewatered less than 20 hours. Estimated average density decreased from 10.8 larvae/m 2 before dewatering to 2.3 larvae/m 2 after refilling, suggesting that abundance declined by 79%; simulation suggested this decline ranged 71–84% (interquartile range). In the laboratory, we examined the emergence and mortality rates of larvae dewatered 0–48 hrs. The emergence rate in the laboratory was similar to that in the field. Mortality rate increased with hours dewatered and was higher for emerged than burrowed larvae. Laboratory estimates of mortality rate predicted a 61% decline in abundance if only burrowed larvae survived and a 54% decline if both burrowed and emerged larvae survived. Abundance declines in the field could be from mortality (e.g., desiccation, predation) and relocation to watered habitat. Our results indicate dewatering can substantially affect spatial distribution and abundance of larval lampreys in freshwater ecosystems.

Oregon