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Vegetation responses to large dam removal on the Elwha River, Washington, USA

Large dam removal can trigger changes to physical and biological processes that influence vegetation dynamics in former reservoirs, along river corridors downstream of former dams, and at a river’s terminus in deltas and estuaries. We present the first comprehensive review of vegetation response to major fluvial disturbance caused by the world’s largest dam removal. After being in place for nearly a century, two large dams were removed along the Elwha River, Washington, USA, between 2011 and 2014. The exposure, erosion, transport, and deposition of large volumes of sediment and large wood that were impounded behind the dams created new fluvial surfaces where plant colonization and growth have occurred. In the former reservoirs, dam removal exposed ~290 ha of unvegetated sediment distributed on three main landforms: valley walls, high terraces, and dynamic floodplains. In addition to natural revegetation in the former reservoirs, weed control and seeding and planting of desirable plants influenced vegetation trajectories. In early years following dam removal, ~20.5 Mt of trapped sediment were eroded from the former reservoirs and transported downstream. This sediment pulse, in combination with transport of large wood, led to channel widening, an increase in gravel bars, and floodplain deposition. The primary vegetation responses along the river corridor were a reduction in vegetated area associated with channel widening, plant establishment on new gravel bars, increased hydrochory, and altered plant community composition on gravel bars and floodplains. Plant species diversity increased in some river segments. In the delta, sediment deposition led to the creation of ~26.8 ha of new land surfaces and altered the distribution and dynamics of intertidal water bodies. Vegetation colonized ~16.4 ha of new surfaces: mixed pioneer vegetation colonized supratidal beach, river bars, and river mouth bars, and emergent marsh vegetation colonized intertidal aquatic habitats. In addition to the sediment-dominated processes that have created opportunities for plant colonization and growth, biological processes such as restored hydrochory and anadromous fish passage with associated delivery of marine-derived nutrients may influence vegetation dynamics over time. Rapid changes to landforms and vegetation growth were related to the large sediment pulse in the early years following dam removal, and the rate of change is expected to attenuate as the system adjusts to natural flow and sediment regimes.

Washington

Potential effects of climate change on aquatic ecosystems of the Great Plains of North America

The Great Plains landscape is less topographically complex than most other regions within North America, but diverse aquatic ecosystems, such as playas, pothole lakes, ox-bow lakes, springs, groundwater aquifers, intermittent and ephemeral streams, as well as large rivers and wetlands, are highly dynamic and responsive to extreme climatic fluctuations. We review the evidence for climatic change that demonstrates the historical importance of extremes in north-south differences in summer temperatures and east-west differences in aridity across four large subregions. These physical driving forces alter density stratification, deoxygenation, decomposition and salinity. Biotic community composition and associated ecosystem processes of productivity and nutrient cycling respond rapidly to these climatically driven dynamics. Ecosystem processes also respond to cultural effects such as dams and diversions of water for irrigation, waste dilution and urban demands for drinking water and industrial uses. Distinguishing climatic from cultural effects in future models of aquatic ecosystem functioning will require more refinement in both climatic and economic forecasting. There is a need, for example, to predict how long-term climatic forecasts (based on both ENSO and global warming simulations) relate to the permanence and productivity of shallow water ecosystems. Aquatic ecologists, hydrologists, climatologists and geographers have much to discuss regarding the synthesis of available data and the design of future interdisciplinary research.

Hydrological Processes

Referees and the publications crisis

Routine refereeing by peers of manuscripts submitted to scholarly journals is a logical and effective device that can obviate ‘crankiness, irrelevance and gross incompetence’ [ Ziman , 1970 a ] on the one hand and minimize editorial arbitrariness on the other. As reviewed by Zuckerman and Merton [1971], the device has historical roots that extend back to the beginning of the first scholarly journals, such as Transactions of the Royal Society, and Journal des Scavans . The growth of science since World War II and the pressure of burgeoning manuscript submission appear to have been important factors in making automatic peer review nearly universal in American and British Commonwealth natural science journals and in international journals influenced by Anglo‐North Americans. A 1962 survey cited by Zuckerman and Merton [1971] found that 71% of 156 physical and biological science journals in 13 countries made use of referees.

Eos, Earth and Space Science News

Monitoring plans for Louisiana’s system-wide assessment and monitoring program (SWAMP). Version IV

The System-Wide Assessment and Monitoring Program (SWAMP) has been envisioned as a long-term monitoring program to ensure a comprehensive network of coastal data collection activities is in place to support the development, implementation, and adaptive management of the coastal protection and restoration program within coastal Louisiana. The Coastwide Reference Monitoring System (CRMS) and Barrier Island Comprehensive Monitoring (BICM) programs have been implemented under SWAMP, while other aspects of system dynamics, including offshore and inland water-body boundary conditions, nontidal freshwater habitats, riverine conditions, risk status, and protection performance, are not presently the subject of CPRA-coordinated (Coastal Protection and Restoration Authority) monitoring. In order to implement these additional aspects of SWAMP, CPRA partnered with The Water Institute of the Gulf and others to develop 1) a programmatic monitoring plan for evaluating the effectiveness of the coastal protection and restoration program on a coastwide scale, and 2) basinwide monitoring plans that will incorporate the elements of the programmatic plan with specific data collection activities designed to capture effects within the basin. Monitoring plans were developed for Barataria Basin, Pontchartrain Region (includes Breton Sound, Pontchartrain and Mississippi River Delta Basins), and the western basins (Calcasieu-Sabine, Mermentau, Teche-Vermilion, Atchafalaya, and Terrebonne) for both the natural and human systems using a process to identify the monitoring variables, objectives, and sampling design. The monitoring variables and objectives identified fall under the general categories of weather and climate, biotic integrity, water quality, hydrology, physical terrain, population and demographics, housing and community characteristics, economy and employment, ecosystem dependency, residential properties protection, and critical infrastructure and essential services protection. A rigorous statistical analysis, examination of modeling needs, and thorough reviews of previous planning and monitoring efforts were conducted to develop the sampling designs for the natural and human system monitoring plans. The plan relies heavily on the use of existing data, thus, coordination with other agencies (e.g., LDEQ , LDWF) and CPRA’s existing monitoring programs (e.g., BICM, CRMS) is critical to the plan’s success. Implementation of the plans will require development of quality control and quality assurance protocols, specific standardized operating procedures for each of the data collection efforts, a data management plan, and a reporting framework to contribute to decision making and reducing uncertainty in management actions.

Louisiana

Wetland restoration in the Prairie Pothole Region of North America: A literature review

The landscape of the prairie pothole region (PPR), a grassland biome of the northern U.S. Great Plains and parts of Canada, has been greatly altered by land use since the 1800's. Conversion of grassland to cropland and drainage of wetlands has resulted in wetland losses of up to 90% in some areas. Besides the area providing critical habitat to various wildlife, breeding waterfowl, and migratory birds, its seasonal wetlands support diverse plant and invertebrate communities, play a role in flood attenuation, act as traps for nutrients. store and recharge groundwater. and are valued recreational lands. Most of the restoration of prairie potholes has only occurred since the 1980's, with few follow-up studies performed and little postrestoration monitoring of these restorations. Monitoring and research of wetland restoration in the PPR is less common relative to the number of postrestoration studies done on other wetland types in the United States. This report is a synthesis of current knowledge of restored prairie pothole wetlands and makes suggestions for future wetland restoration-related research. In order to determine the benefits of restored wetlands, it is important to better understand how closely restored wetlands in the PPR resemble their natural analogues in terms of functions and values. The report categorizes PPR literature into five general sections: wildlife, vegetation, invertebrates, fish, and physical and chemical characteristics of restored wetlands. Each of these five sections has a summary of research and is divided into two parts: an overview of research and findings and regional case studies. Most PPR studies have focused on bird and plant communities, whereas research done on the functions of restored wetlands and studies concerning less visible fauna and physical and chemical characteristics are scarce. In addition, there is a scarcity of research in the western and northern portions or the PPR; most studio to date have been conducted in Iowa. Minnesota, or South Dakota. Key Words: wetland restoration, prairie pothole region, PPR, literature review, wetland functions and values. postrestoration studies

Biological Science Report

A brief introduction to integrated pest management for aquatic systems

Aquatic invasive plants and animals are increasingly becoming a problem, causing severe economic and ecological damage to critical freshwater systems. The best strategy for controlling an invasive pest employs an integrated pest management (IPM) approach using a combination of biological, physical, chemical, and social/cultural control methods. Here, we examine the history and development of IPM and provide a discussion of the components of an IPM program involving development, evaluation, and management. Control approaches will be reviewed and the application of this technique to aquatic systems will be discussed. A discussion of the Great Lakes Fishery Commission's (GLFC) Integrated Management of Sea Lamprey Petromyzon marinus Control Program will be provided to illustrate the application of IPM to an aquatic system.

North American Journal of Fisheries Management

Quantitative paleoflood hydrology

This chapter reviews the paleohydrologic techniques and approaches used to reconstruct the magnitude and frequency of past floods using geological evidence. Quantitative paleoflood hydrology typically leads to two phases of analysis: (1) documentation and assessment of flood physical evidence (paleostage indicators), and (2) relating identified flood evidence to flood discharge, based on hydraulic calculations. Most paleoflood studies rely on stratigraphic sequences of fine-grained flood deposits found in slack-water and eddy environments in bedrock rivers to enable the estimates of paleodischarges for floods of past few centuries or millennia. Geochronology, commonly based on techniques such as optically stimulated luminescence (OSL) and radiocarbon, enable paleoflood age estimates. Such paleoflood discharge and age information can vastly improve flood frequency estimates, particularly for large and rare floods for which quantile estimates are typically poorly constrained by short historical records. The inclusion of such physical evidence of flooding into flood frequency assessments has been aided by new techniques of frequency analysis that can efficiently employ such data. Consequently, paleoflood analysis is supporting probability risk management of critical infrastructure such as nuclear facilities, dams, or bridges. Paleoflood studies also support understanding of the recurrence of geomorphically effective flows and assessment of non-stationarity in the frequency of large floods due to climate, land-use, or other environmental changes.

Llobregat River

Controls of stream chemistry and fish populations in the Neversink watershed, Catskill Mountains, New York

The Neversink Watershed Study was initiated in 1991 to develop an understanding of the key natural processes that control water quality within the forested, 166 km 2 (64 mi 2 ), Neversink River watershed; part of the New York City drinking water supply system, in the Catskill Mountain region of New York. The study entailed (1) hydrological investigations of water movement from the atmosphere to streams, (2) biogeochemical investigations of nitrogen and calcium, important nutrients in forest and aquatic ecosystems whose availability has been altered by acidic deposition, (3) an investigation of elevational patterns in atmospheric deposition, and (4) fisheries investigations to determine the relative importance of physical habitat and acidic deposition in controlling the abundance and diversity of fish species in the watershed. This report summarizes the results of these investigations, which have also been presented, in detail, in peer-reviewed technical articles and reports that are cited throughout the text.

New York

Analog experiments of lava flow emplacement

Laboratory experiments that simulate lava flows have been in use by volcanologists for many years. The behavior of flows in the lab, where “eruption” parameters, material properties, and environmental settings are tightly controlled, provides insight into the influence of various factors on flow evolution. A second benefit of laboratory lava flows is to provide a set of observations with which numerical models of flow emplacement can be tested. Models of lava flow emplacement vary in mathematical approach, physical assumptions, and computational cost. Nonetheless, all models require thorough testing and evaluation, and laboratory experiments produce an excellent test for models. This paper provides a primer on modern analog laboratory lava flow experiments. It reviews scaling con- siderations and provides quantitative information meant to guide future experimentalists in designing their experiments to be relevant to natural processes. Traditional and novel laboratory techniques are described, including a discussion of current limitations. New insights from recent experiments highlight the impact of topographic conditions and highlight the importance of considering bed roughness, major obstacles, and slope breaks. The influence of episodic or non-uniform effusion rate is demonstrated through recent experi- mental works. Lastly, the paper discusses several open questions about lava flow emplacement and the ways in which future improvements in experimental methods, such as the ability to utilize three-phase suspensions and materials with complex rheologies and to image the interior of flows could help answer these.

Annals of Geophysics

Responses of aquatic and streamside amphibians to timber harvest: a review

Stream-dwelling amphibians, which can be the dominant vertebrates of small streams in forests of the Pacific Northwest, are prototypic riparian or­ ganisms. Larvae of several species are totally aquatic, while adults use the terrestrial streamside (riparian) habitat to varying degrees. Impacts of timber harvest vary among species, physical habitats, and regions of the Pacific Northwest. Populations of giant salamanders (Dicamptodon) increased fol­ lowing clear-cutting in the Oregon Cascades, while in the Oregon Coast Range, the long-term effects of logging were negative and severe for all species. Timber harvest is less disruptive in high-gradient streams and in streams where there is uncut timber remaining upstream. Buffer strips ad­ jacent to headwater and small streams can provide shade and reduce sedimentation from logging activities. Critical needs exist to define the ecological requirements of amphibians in headwaters, assess the effects of logging on amphibians in different regions and under varying climatic regimes, and determine what sizes of buffer strips or uncut patches are most effective and cost-efficient for protecting stream amphibians.

Book chapter

Impacts of new highways and subsequent landscape urbanization on stream habitat and biota

New highways are pervasive, pernicious threats to stream ecosystems because of their short- and long-term physical, chemical, and biological impacts. Unfortunately, standard environmental impact statements (EISs) and environmental assessments (EAs) focus narrowly on the initial direct impacts of construction and ignore other long-term indirect impacts. More thorough consideration of highway impacts, and, ultimately, better land use decisions may be facilitated by conceptualizing highway development in three stages: initial highway construction, highway presence, and eventual landscape urbanization. Highway construction is characterized by localized physical disturbances, which generally subside through time. In contrast, highway presence and landscape urbanization are characterized by physical and chemical impacts that are temporally persistent. Although the impacts of highway presence and landscape urbanization are of similar natures, the impacts are of a greater magnitude and more widespread in the urbanization phase. Our review reveals that the landscape urbanization stage is clearly the greatest threat to stream habitat and biota, as stream ecosystems are sensitive to even low levels (<10%) of watershed urban development. Although highway construction is ongoing, pervasive, and has severe biological consequences, we found few published investigations of its impacts on streams. Researchers know little about the occurrence, loading rates, and biotic responses to specific contaminants in highway runoff. Also needed is a detailed understanding of how highway crossings, especially culverts, affect fish populations via constraints on movement and how highway networks alter natural regimes (e.g., streamflow, temperature). Urbanization research topics that may yield especially useful results include a) the relative importance and biological effects of specific components of urban development - e.g., commercial or residential; b) the scenarios under which impacts are reversible; and c) the efficacy of mitigation measures - e.g., stormwater retention or treatment and forested buffers. Copyright ?? Taylor & Francis Inc.

Reviews in Fisheries Science

Land crabs as key drivers in tropical coastal forest recruitment

Plant populations are regulated by a diverse assortment of abiotic and biotic factors that influence seed dispersal and viability, and seedling establishment and growth at the microsite. Rarely does one animal guild exert as significant an influence on different plant assemblages as land crabs. We review three tropical coastal ecosystems-mangroves, island maritime forests, and mainland coastal terrestrial forests-where land crabs directly influence forest composition by limiting tree establishment and recruitment. Land crabs differentially prey on seeds, propagules and seedlings along nutrient, chemical and physical environmental gradients. In all of these ecosystems, but especially mangroves, abiotic gradients are well studied, strong and influence plant species distributions. However, we suggest that crab predation has primacy over many of these environmental factors by acting as the first limiting factor of tropical tree recruitment to drive the potential structural and compositional organisation of coastal forests. We show that the influence of crabs varies relative to tidal gradient, shoreline distance, canopy position, time, season, tree species and fruiting periodicity. Crabs also facilitate forest growth and development through such activities as excavation of burrows, creation of soil mounds, aeration of soils, removal of leaf litter into burrows and creation of carbon-rich soil microhabitats. For all three systems, land crabs influence the distribution, density and size-class structure of tree populations. Indeed, crabs are among the major drivers of tree recruitment in tropical coastal forest ecosystems, and their conservation should be included in management plans of these forests. ?? 2009 Cambridge Philosophical Society.

Biological Reviews

Turbidite systems: State of the art and future directions

The study of turbidite systems covering a wide range of physical scales has led to confus ion regarding the use of certain key terms and hence a breakdown in communication between workers involved in turbidite research. There are three fundamentally different scales and types of observations derived from the study of outcrop data (ancient systems), high-resolution seismic reflection and side scan sonar data (modern systems), and multichannel seismic reflection data (modern and older buried systems). Despite the variability of scale the same terms are used to describe features that may have little in common. Consequently, turbidite system terminology has become imprecise and even misleading in some cases, thus providing impediments to developing useful predictive models for processes, depositional environments, and lateral and vertical distribution of sand bodies within turbidite systems. To address this concern, we review the principal elements critical to deepwater systems: slump scars, submarine canyons, channels, channel fill deposits, overbank deposits, and lobes and discuss some of their recognition criteria with each different type of data base. Local and regional tectonic setting, relative sea level variations, and bottom current activity are probably the main factors that control size, external geometry, internal stratal configuration, and facies characteristics of both modern and ancient turbidite systems. These factors ultimately control the timing and bounding characteristics between stages of growth of deepwater systems. If comparison of elements from different turbidite deposits using various data types is carried out at similar physical and temporal scales, predictive models eventually may be improved.

Reviews of Geophysics

Toward invasive mussel genetic biocontrol: Approaches, challenges, and perspectives

Invasive freshwater mussels, such as the zebra ( Dreissena polymorpha ), quagga ( Dreissena rostriformis bugensis ), and golden ( Limnoperna fortunei ) mussel have spread outside their native ranges throughout many regions of the North American, South American, and European continents in recent decades, damaging infrastructure and the environment. This review describes ongoing efforts by multiple groups to develop genetic biocontrol methods for invasive mussels. First, we provide an overview of genetic biocontrol strategies that have been applied in other invasive or pest species. Next, we summarize physical and chemical methods that are currently in use for invasive mussel control. We then describe the multidisciplinary approaches our groups are employing to develop genetic biocontrol tools for invasive mussels. Finally, we discuss the challenges and limitations of applying genetic biocontrol tools to invasive mussels. Collectively, we aim to openly share information and combine expertise to develop practical tools to enable the management of invasive freshwater mussels.

iScience

Education and training of future wetland scientists and managers

Wetland science emerged as a distinct discipline in the 1980s. In response, courses addressing various aspects of wetland science and management were developed by universities, government agencies, and private firms. Professional certification of wetland scientists began in the mid-1990s to provide confirmation of the quality of education and experience of persons involved in regulatory, management, restoration/construction, and research involving wetland resources. The education requirements for certification and the need for persons with specific wetland training to fill an increasing number of wetland-related positions identified a critical need to develop curriculum guidelines for an undergraduate wetland science and management major for potential accreditation by the Society of Wetland Scientists. That proposed major contains options directed toward either wetland science or management. Both options include required basic courses to meet the general education requirements of many universities, required upper-level specialized courses that address critical aspects of physical and biological sciences applicable to wetlands, and a minimum of four additional upper-level specialized courses that can be used to tailor a degree to students' interests. The program would be administered by an independent review board that would develop guidelines and evaluate university applications for accreditation. Students that complete the required coursework will fulfill the education requirements for professional wetland scientist certification and possess qualifications that make them attractive candidates for graduate school or entry-level positions in wetland science or management. Universities that offer this degree program could gain an advantage in recruiting highly qualified students with an interest in natural resources. Alternative means of educating established wetland scientists are likewise important, especially to provide specialized knowledge and experience or updates related to new management discoveries, policies, and regulations. ?? 2008 The Society of Wetland Scientists.

Wetlands

Methods for measuring denitrification: Diverse approaches to a difficult problem

Denitrification, the reduction of the nitrogen (N) oxides, nitrate (NO 3 − ) and nitrite (NO 2 − ), to the gases nitric oxide (NO), nitrous oxide (N 2 O), and dinitrogen (N 2 ), is important to primary production, water quality, and the chemistry and physics of the atmosphere at ecosystem, landscape, regional, and global scales. Unfortunately, this process is very difficult to measure, and existing methods are problematic for different reasons in different places at different times. In this paper, we review the major approaches that have been taken to measure denitrification in terrestrial and aquatic environments and discuss the strengths, weaknesses, and future prospects for the different methods. Methodological approaches covered include (1) acetylene-based methods, (2) 15 N tracers, (3) direct N 2 quantification, (4) N 2 :Ar ratio quantification, (5) mass balance approaches, (6) stoichiometric approaches, (7) methods based on stable isotopes, (8) in situ gradients with atmospheric environmental tracers, and (9) molecular approaches. Our review makes it clear that the prospects for improved quantification of denitrification vary greatly in different environments and at different scales. While current methodology allows for the production of accurate estimates of denitrification at scales relevant to water and air quality and ecosystem fertility questions in some systems (e.g., aquatic sediments, well-defined aquifers), methodology for other systems, especially upland terrestrial areas, still needs development. Comparison of mass balance and stoichiometric approaches that constrain estimates of denitrification at large scales with point measurements (made using multiple methods), in multiple systems, is likely to propel more improvement in denitrification methods over the next few years.

Ecological Applications

Contaminant Hazard Reviews. [Reports No. 1-28 on CD-ROM.]

This compact disc (CD) contains the first 28 reports in the Contaminant Hazard Reviews (CHR) that were published originally between 1985 and 1994 in the U.S. Department of the Interior Biological Report series. The CD was produced because printed supplies of these reviews--a total of 84,000--became exhausted and demand remained high. Each review was prepared at the request of environmental specialists of the U.S. Fish and Wildlife Service and each contained specific information on mirex, cadmium, carbofuran, toxaphene, selenium, chromium, polychlorinated biphenyls, dioxins, diazinon, mercury, polycyclic aromatic hydrocarbons, arsenic, chlorpyrifos, lead, tin, index issue, pentachlorophenol, atrazine, molybdenum, boron, chlordane, paraquat, cyanide, fenvalerate, diflubenzuron, zinc, famphur, or acrolein. Each report reviewed and synthesized the technical literature on a single contaminant and its effects on terrestrial plants and invertebrates, aquatic plants and animals, avian and mammalian wildlife, and other natural resources. The subtopics include contaminant sources and uses; physical, chemical, and metabolic properties; concentrations in field collections of abiotic materials and living organisms; deficiency effects, where appropriate; lethal and sublethal effects, including effects on survival, growth, reproduction, metabolism, mutagenicity, teratogenicity, and carcinogenicity; proposed criteria for the protection of human health and sensitive natural resources; and recommendations for additional research.

Book

Chapter 3 - Phenomenology of tsunamis: Statistical properties from generation to runup

Observations related to tsunami generation, propagation, and runup are reviewed and described in a phenomenological framework. In the three coastal regimes considered (near-field broadside, near-field oblique, and far field), the observed maximum wave amplitude is associated with different parts of the tsunami wavefield. The maximum amplitude in the near-field broadside regime is most often associated with the direct arrival from the source, whereas in the near-field oblique regime, the maximum amplitude is most often associated with the propagation of edge waves. In the far field, the maximum amplitude is most often caused by the interaction of the tsunami coda that develops during basin-wide propagation and the nearshore response, including the excitation of edge waves, shelf modes, and resonance. Statistical distributions that describe tsunami observations are also reviewed, both in terms of spatial distributions, such as coseismic slip on the fault plane and near-field runup, and temporal distributions, such as wave amplitudes in the far field. In each case, fundamental theories of tsunami physics are heuristically used to explain the observations.

Advances in Geophysics