Search USGSSearch

SEARCH · Search USGS

Results for “Naturalist”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 163 records · Page 9Linked to original sources

Monitoring Least Bitterns (Ixobrychis exilis) in Vermont: Detection probability and occupancy modeling

Ixobrychus exillis (Least Bittern) is listed as a species of high concern in the North American Waterbird Conservation Plan and is a US Fish and Wildlife Service migratory bird species of conservation concern in the Northeast. Little is known about the population of Least Bitterns in the Northeast because of their low population density, tendency to nest in dense wetland vegetation, and secretive behavior. Urban and agricultural development is expected to encroach on and degrade suitable wetland habitat; however, we cannot predict the effects on Least Bittern populations without more accurate information on their abundance and distribution. We conducted surveys of wetlands in Vermont to assess the efficacy of a monitoring protocol and to establish baseline Least Bittern abundance and distribution data at a sample of 29 wetland sites. Surveys yielded detections of 31 individuals at 15 of 29 sites across 3 biophysical regions and at 5 sites where occupancy had not been previously reported. Probability of occupancy was positively related to wetland size and number of patches, though the relationships were not strong enough to conclude if these were true determinants of occupancy. Call—response broadcast surveys yielded 30 detections, while passive surveys yielded 13. Call—response broadcasts ( P = 0.897) increased the rate of detection by 55% compared to passive surveys ( P = 0.577). Our results suggest that call—response broadcast surveys are an effective means of assessing Least Bittern occupancy and may reduce bias in long-term monitoring programs.

Vermont

Changes in freshwater mussel communities linked to legacy pollution in the Lower Delaware River

Freshwater mussels are among the most-imperiled organisms worldwide, although they provide a variety of important functions in the streams and rivers they inhabit. Among Atlantic-slope rivers, the Delaware River is known for its freshwater mussel diversity and biomass; however, limited data are available on the freshwater mussel fauna in the lower, non-tidal portion of the river. This section of the Delaware River has experienced decades of water-quality degradation from both industrial and municipal sources, primarily as a function of one of its major tributaries, the Lehigh River. We completed semi-quantitative snorkel surveys in 53.5 of the 121 km of the river to document mussel community composition and the continued impacts from pollution (particularly inputs from the Lehigh River) on mussel fauna. We detected changes in mussel catch per unit effort (CPUE) below the confluence of the Lehigh River, with significant declines in the dominant species Elliptio complanata (Eastern Elliptio) as we moved downstream from its confluence—CPUE dropped from 179 to 21 mussels/h. Patterns in mussel distribution around the Lehigh confluence matched chemical signatures of Lehigh water input. Specifically, Eastern Elliptio CPUE declined more quickly moving downstream on the Pennsylvania bank, where Lehigh River water input was more concentrated compared to the New Jersey bank. A definitive causal link remains to be established between the Lehigh River and the dramatic shifts in mussel community composition, warranting continued investigation as it relates to mussel conservation and restoration in the basin.

Lower Delaware River

Age and growth of a native, lightly exploited population of Coregonus clupeaformis (Lake Whitefish) in a small natural lake in Maine

We assessed annual growth of Coregonus clupeaformis (Lake Whitefish) from a natural, lightly exploited population in a small lake in northern Maine using observed and back-calculated length-at-age data. We sampled Lake Whitefish from Clear Lake, ME, with gill nets and extracted otoliths from 57 fish. We incorporated age-at-length data into a von Bertalanffy growth function, which we employed to model growth trajectories from individual fish. We used these estimates to evaluate length-at-age variability within this population. Ages for Lake Whitefish varied from 8 y to 30 y. Among all fish, we characterized incremental growth by an average-growth coefficient of K = 0.156 and an estimated L∞ of 484 mm. The oldest individuals demonstrated the slowest incremental growth (K = 0.106) when compared to younger cohorts (K = 0.218). We observed an inverse relationship between L∞ and K and the estimated age-at-capture (R2 = 0.178 and 0.723, respectively), which suggests relatively slow growth and a smaller maximum size for the longest living members of the population. Our estimated parameters serve as a reference to inform management of populations of Lake Whitefish.

Maine

Wild canid distribution and co-existence in a natural–urban matrix of the Pioneer Valley of Western Massachusetts

Although development and urbanization are typically believed to have negative impacts on carnivoran species, some species can successfully navigate an urban matrix. Sympatric carnivorans compete for limited resources in urban areas, likely with system-specific impacts to their distributions and activity patterns. We used automatically triggered wildlife cameras to assess the local distribution and co-existence of Canis latrans (Coyote) , Vulpes vulpes (Red Fox), and Urocyon cinereoargenteus (Gray Fox) across the Pioneer Valley, MA, in relation to different levels of human development. We placed cameras at 79 locations in forested, altered, and urban land-use areas from September to November 2012 and accumulated 1670 trap nights. We determined site characteristics and detection rates for 12 other wildlife species for each camera location to develop a generalized linear model for the local distribution of each focal canid species across the study area. We also compared diel activity patterns among Coyotes, Red Foxes, and Gray Foxes, and calculated coefficients of overlap between each pair. The local distribution of Coyotes was positively associated with the detection rates of their prey and not associated with detection rates of sympatric carnivoran species. Red Foxes and Gray Foxes had negative relationships with the detection rate of Coyotes, and none of the 3 canid species showed a positive correlation with increased levels of urbanization. There was a high degree of temporal overlap in diel activity patterns and limited spatial overlap of our focal species, which suggests that any competition avoidance across our study area occurred at the spatial level. Coyotes fill the role of top predator in the Pioneer Valley, and likely have a negative impact on the local distributions of smaller canids, while their own local distributions seem to be driven by prey availability.

Massachesetts

The bee fauna of coastal Napatree Point and two inland sites in southern Rhode Island

We surveyed the bee fauna at Napatree Point, a coastal barrier beach in southwestern Rhode Island, using bee-bowl and netting samples, and compared results to bee-bowl samples at 2 inland sites. We collected a total of 53 species and morphospecies at Napatree Point, including 5 likely Rhode Island state records and several coastal dune and sand-nesting species that were not found inland. The comparative bee-bowl samples (colored bowls with soapy water placed at the sites to collect visiting bees) captured 35 species at Napatree Point and 66 at the inland sites (which included 6 likely state records, 2 shared with Napatree). The Napatree fauna shared numerous species with the inland sites, but overall species composition differed substantially. Both Napatree and inland sites showed greatest bee activity and species richness in spring. During spring, the most common bees at Napatree were twig- and cavity-nesting species such as Ceratina dupla and Osmia simillima , and the wood-nesting Lasioglossum oblongum , while the most abundant bees inland were the soil-nesting Andrena nasonii and Augochlorella aurata . Netting samples differed from bee-bowl samples in that they captured larger species and species foraging at flowers distant from the bee-bowl transects, but they missed several diminutive species that were captured by bee bowls. Use of 2 sampling methods, therefore, provided a broader view of the bee fauna than would have been possible with a single collection method.

Rhode Island

Eviction notice: Observation of a Common Tern (Sterna hirundo) usurping an active Least Tern (Sternula antillarum) Nest

Although nest usurpation is common in some species and orders of birds, usurpation has rarely been reported for Sterninae. We observed a Sterna hirundo (Common Tern) egg in an active Sternula antillarum (Least Tern) nest with a complete clutch in a mixed-species Sterninae colony in Chesapeake Bay, MD, in May 2018. Based on observations from a game camera following usurpation, Common Terns incubated the mixed-species clutch, with no further parental care provided by the usurped Least Tern. The clutch never hatched, as the Common Terns abandoned the nest prior to the hatching. While we suspect that Common Terns usurped the Least Tern nest, alternative scenarios may explain how the Common Tern egg was documented in a Least Tern nest.

Maryland

Adult survival of common eiders in Maine

Although most species of sea ducks are poorly studied, much is known about the population dynamics of the American race of Somateria mollissma dresseri (Common Eider). Although Common Eiders typically have high adult survival and low recruitment rates, their populations in Maine have declined since the early 1990s. Wildlife managers hypothesized this decline was due to reduced adult survival; therefore, they decreased daily bag limits in Maine in 1999 and 2009 to increase local populations. The goals of this project were to assess (a) whether survival rates of adult females captured while nesting varied between historical estimates (1943–1993) and recent estimates (2000–2012), (b) whether survival rates increased from 2000–2009 after the initial harvest restrictions were implemented in 1999, and (c) determine if estimates of survival rates of adult males and females captured while molting differed from estimates of adult females captured while nesting. We used mark–recapture models to estimate survival rates of Common Eiders we banded in Maine (nesting females [ n = 2340] from 2000 to 2012; molting males [ n = 4366] and molting females [ n = 4952] from 2000 to 2009). We found no difference in survival of nesting females based on historical (mean ± SE = 0.9003 ± 0.0841) and recent estimates (0.90 ± 0.015). Although we observed annual fluctuations in survival, survival rates did not increase following the implementation of harvest restrictions. Mean annual survival rates were similarly high for molting females (0.894 ± 0.0205) and nesting females, but lower for molting males (0.855 ± 0.0128). Lower survival rates of adult males may reflect the preference by US hunters to selectively harvest adult males. Overall mean recovery rates of banded birds were low (females: 0.037 ± 0.00043, males: 0.0226 ± 0.0006). We hypothesize that current harvest rates may be influencing decreased survival of adult males to some extent.

Maine

Hypogeous, sequestrate fungi (genus Elaphomyces) found at small-mammal foraging sites in high-elevation conifer forests of West Virginia

Little is known about hypogeous, sequestrate (i.e., truffles) fungi in the eastern United States. Since the fruiting bodies of these fungi are part of the diet of multiple rodent species, filling data gaps is important to understanding more about truffle species distribution and habitat associations. During a microhabitat study on radio-collared Virginia Northern Flying Squirrels (Glaucomys sabrinus fuscus Miller) in 2013, we opportunistically sampled truffles at small mammal digs and scratches within our microhabitat plots. All sampling was conducted within known squirrel foraging home ranges. We found three Elaphomyces species: Elaphomyces macrosporus Castellano and Elliott, E. verruculosus Castellano, and E. americanum Castellano. Our observations of E. macroporus are the first from West Virginia. Herein, we describe the microhabitat associations for each fungal species. We suggest using small mammal digs and scratches as potential indicators to opportunistically gather more information on truffle species in coniferous forests of the eastern United States.

West Virginia

An assessment of the thiamine status of Smallmouth Bass (Micropterus dolomieu) in the Susquehanna River watershed

Unpredictable recruitment and physical abnormalities (sores and lesions) have been observed in populations of Micropterus dolomieu (Smallmouth Bass) throughout the Susquehanna River basin. Malnutrition has been proposed as one of among several potential stressors, yet little to no information was available to critically assess its feasibility as a causal factor. We measured thiamine profiles of Smallmouth Bass (free thiamine [T], thiamine monophosphate [TP], and thiamine pyrophosphate [TPP]) for 3 tissues (egg, liver, and muscle) collected at 13 sites in the Susquehanna River and compared the values to those in 2 neighboring drainages (Allegheny River and Delaware River). Mass-specific thiamine concentrations in eggs were comparable to published values for Micropterus salmoides (Largemouth Bass), but higher than those found in Sander vitreus (Walleye), and Salvelinus namaycush (Lake Trout) known to consume Alosa pseudoharengus (Alewife), a thiaminase positive forage fish. In general, Smallmouth Bass collected from sites within the Susquehanna River basin had thiamine concentrations comparable to fish at the site in the Allegheny River, yet average thiamine concentrations in fish from the Susquehanna and Allegheny sites were each considerably lower than the average value collected from the Smallmouth Bass in the Delaware River. Future studies should consider a more balanced sampling design among watersheds to assess spatial variability among sites and basins. Average site-specific thiamine concentrations measured in Smallmouth Bass exceeded published minimum threshold values for Lake Trout. Given that Smallmouth Bass appear to have distinct thiamine profiles, concentrations, and timing of egg development, threshold thiamine concentrations parameterized for salmonids may not apply to Smallmouth Bass. As such, empirical studies that parameterize species-specific thiamine thresholds are needed to formally evaluate if thiamine deficiency is an issue for Smallmouth Bass in the Susquehanna River basin. To our knowledge, these are the first data on thiamine concentrations published for Smallmouth Bass.

New York, New Jersey, Pennsylvania

Ecology of an isolated muskrat population during regional population declines

Evidence indicating a decline in muskrat populations in the United States during the past 40 years has led to speculation regarding factors influencing muskrat survival. In order to understand population dynamics and survival, it is important to first define the ecology of local populations. We investigated the dwelling structure use, movements, home range, and survival of radio-tagged muskrats (n = 14) in an urban wetland complex in central Pennsylvania. We used locations collected from intensive radio telemetry monitoring to determine number of lodging structures used, hourly movement, and size and percent area overlap of home ranges. Muskrats shared an average of nine lodging structures and on average 68% of a muskrat’s home range overlapped other muskrat home ranges. We used four home range estimators (Kernel Density Estimator (KDE) href, KDEad hoc, KDEplug-in, and Local Convex Hull estimator) to assess the ability of each estimator to represent muskrat home ranges. The KDEplug-in that constrained the estimate of home range to habitat boundaries provided the more appropriate home range size for muskrats in a linear-non-linear habitat matrix. We also calculated overwinter survival estimates using known-fate models. Our top model indicated a positive effect of the average weekly precipitation on survival with an overwinter survival estimate of 0.59 (SE = 0.16). The main cause of muskrat mortality was predation by mink (n = 6). The small sample size and uncertainty surrounding our model selection led to weak estimates of survival, however our model suggests that snowfall may be an important factor in muskrat survival. Our study provides novel data on muskrat ecology in Pennsylvania as well as preliminary evidence for future investigations of factors affecting muskrat survival during the winter months.

Pennsylvania

Characteristics of day-roosts used by the Northern Long-eared Bat (Myotis septentrionalis) in coastal New York

In North America, Myotis septentrionalis (Northern Long-eared Bat) has experienced precipitous declines from white-nose syndrome. As these bats become rare and difficult to capture, additional day-roost assessments to inform management may fill gaps in our understanding, particularly in habitats and regions where such roosts have never been surveyed. Over 2 summers, we radio-tracked 16 individuals from a maternity colony on Long Island, NY, in a small forested patch surrounded by development and ocean. These bats disproportionately selected small, suppressed Robinia pseudoacacia (Black Locust) trees or snags for roosting. Generally, roosts occurred within the interior or edges of this forest patch, rather than surrounding suburbia, reinforcing the hypothesis that Northern Long-eared Bats are forest adapted. Our study shows even small tracts of forest in coastal, urban areas may have conservation value in providing day-roost and foraging habitat.

New York

DNA metabarcoding-based evaluation of the diet of Big Brown Bats (Eptesicus fuscus) in the Mid-Atlantic region

High-throughput DNA sequencing can generate large genetic datasets in a cost-effective manner. Although the diet of Eptesicus fuscus (Big Brown Bat) has been studied widely in natural and rural systems using visual identification of prey items in feces, our aim was to more completely assess diet using a metabarcoding approach across a wide urban–natural landscape gradient in the mid-Atlantic region. Concordant with our expectations and previous Big Brown Bat diet studies from visual identification, we observed a high abundance of Coleoptera (beetles) relative to other insect orders. Although a possible improvement over visual techniques for studying food habits, we suggest caution in interpreting metabarcoding results in diet studies. We noted observations of environmental or contaminant taxa within these data, and designed a stringent filtering method that we used to eliminate these taxa, but that also removed previously documented prey taxa from our dataset.

Maryland, Pennsylvania, Virginia, West Virginia

Activity patterns of Allegheny Woodrats (Neotoma magister) and two potential competitors in Virginia

Neotoma magister (Allegheny Woodrat) is a nocturnal, emergent rock-habitat specialist (i.e., inhabits rocky outcrops, boulderfields, and caves). Woodrat populations have declined range-wide due to habitat fragmentation, endoparasites, and interspecific competition. We estimated the diel activity curves of Allegheny Woodrats and assessed the effects of habitat type (exposed rock habitat/cave-exterior vs. cave-interior) and season (spring, summer, and fall) on curve shape. We also investigated the effect of 2 granivorous competitors' presence and activity curves ( Peromyscus spp. and Tamias striatus [Eastern Chipmunk]) on woodrat activity. Additionally, we investigated whether the presence or absence of Procyon lotor (Raccoon), a primary carrier of Baylisascaris procyonis (Raccoon Roundworm), significantly affects the presence or absence of Allegheny Woodrats. We used remote-detecting cameras to document the diel cycles of Allegheny Woodrats and 2 competitors across 83 sites in western Virginia and 2 sites in West Virginia from 2017 to 2022. For 13,002 recorded events, we detected woodrats at 36 of 85 sites (3778 camera events). We observed a higher proportion of daytime activity by woodrats within cave interiors than cave exteriors. Allegheny Woodrat activity curves differed among seasons, with the greatest differences observed between summer and fall and with ∼80% activity overlap. These activity curves differed significantly when co-occurring with versus not co-occurring with a competitor. Additionally, Allegheny Woodrats showed an inverse activity rate with Peromyscus spp. Thus, our results suggest that competition avoidance via temporal partitioning occurs between these species. Allegheny Woodrats and Raccoons occurred together more often than expected suggesting the presence of woodrats is currently not reduced by the presence of Raccoons. Our remote-detecting camera data help elucidate relationships of Allegheny Woodrats with presumptive competitors, and open avenues for further investigation in Virginia.

Northeastern Naturalist

Evaluation of threatened, endangered, and rare fish species and communities of the St. Lawrence River and its tributaries in the United States

Biodiversity is responsible for important ecological processes like productivity and ecosystem stability, and rare species are a major component of biodiversity. Rarity increases a species' vulnerability to disturbances and also makes them difficult to study. Globally, species of freshwater systems are some of the most threatened, and evaluation of rare freshwater species and their habitats is needed to help preserve natural flexibility and ecological function. We conducted an analysis of full fish communities of the upper St. Lawrence River and its major US tributaries, with the goals of determining species locations and abundances, associated environmental conditions, the distribution of distinct fish assemblages across the landscape (with emphasis on communities supporting rare species), and potential threats. From 2009 to 2015, the US Geological Survey (USGS) and Saint Regis Mohawk Tribe (SRMT) worked together using standardized methods to collect community samples within 4 different aquatic realms (shallow and deep lentic, and small and large lotic systems) and determine species-specific fish abundances, frequencies of occurrence, and associated habitat signatures and spatial distributions. Distinct fish assemblages and associated habitat conditions were objectively identified by multivariate and hypothesis-testing methods. We used a geographic information system (GIS) to spatially associate habitat, biotic, and landscape attributes within each stream reach throughout the study area, facilitating quantification of distribution patterns. Comparisons with historical data provided estimates of loss or gain of threatened and endangered species (T&E) colonies. We developed a disturbance index to highlight potential threats to aquatic species. More than 140,000 fishes of 87 species were collected from a total of 1140 sample sites, covering 278 stream reaches, including the endangered Notropis anogenus (Pugnose Shiner), and threatened Hiodon tergisus (Mooneye), Etheostoma pellucidum (Eastern Sand Darter), and Acipenser fulvescens (Lake Sturgeon). We identified 50 distinct fish assemblages differing in species composition, abundance, and/or diversity, but only 13 of those assemblages included a T&E species. The rareness, extent, and patchiness of fish assemblages created a mosaic of fish communities across the landscape, from headwaters to the mainstem of the St. Lawrence River. Comparisons with historic surveys (1978–2008) showed a stable number of T&E species colonies or an increase for some species. The geographic distribution of multimetric disturbance index values showed where combinations of disturbances to fish habitats might affect rare fish species and aquatic communities in the region. The species–habitat associations and fish assemblage distributions can be used for evaluation of species, communities, or habitats that may need protection or restoration.

St. Lawrence River study area

Ecology of an insular snake assemblage in coastal Maine

Wildlife populations at the peripheries of their distributions or on isolated islands often display divergent and poorly understood morphological or life-history characteristics compared to core populations. We used a capture–mark–recapture dataset collected over a 19-year period to characterize a northern, insular snake assemblage in coastal Maine. We captured 611 individual snakes of 4 species ( Thamnophis sirtalis [Common Gartersnake; n = 221 individuals], Diadophis punctatus [Ring-necked Snake; n = 258 individuals], Storeria occipitomaculata [Red-bellied Snake; n = 81 individuals], and Opheodrys vernalis [Smooth Greensnake; n = 51 individuals]) and recorded 104 recaptures. We provide some of the first data on growth, reproduction, and movement for these species in northern New England, expanding our understanding of insular and northern snake populations. Specifically, we found that Common Gartersnakes fed primarily on earthworms and amphibians and grew rapidly, in accordance with mainland populations, but exhibited smaller size at maturity and average litter sizes. We captured an unusually large number of Ring-necked Snakes, which are uncommon elsewhere in Maine, and recorded an apparently localized nesting area for this species, as well as relatively long-distance (230–300 m) dispersal away from that location. In our population, female Ring-necked Snakes mature in their third year, and this species exhibits weak sexual size dimorphism (SSD). We found the ecology of Red-bellied Snakes at our study site to be similar to other populations, with individuals feeding on slugs, and females maturing in their second year; however, our population exhibited the strongest pattern of (female-biased) SSD. Smooth Greensnakes were restricted to the most extensive old-field habitat within our study site and fed on a variety of arthropods. We confirmed communal nesting and short incubation period for this species and provide among the first data on growth and longevity (at least 7 years) of this relatively understudied species.

Maine

Long-term monitoring reveals management effects on Prairie Warbler colonization, local extinction, and detection in a Massachusetts pine barren

Habitat management can directly impact Setophaga discolor (Prairie Warbler) abundance and distribution. Despite regional declines, Prairie Warbler populations at Camp Edwards (Bourne, MA) have increased. To investigate habitat-management effects on Prairie Warbler populations at Camp Edwards, we used a dynamic-occupancy model to analyze a long-term monitoring dataset collected across 84 point-count sites from 2013 to 2022. The model results indicated that Prairie Warbler colonization and extinction probabilities were impacted by management (measured in years since disturbance). Colonization probability was highest initially after disturbance, then subsequently decreased for ∼50 years, and extinction probability also decreased for ∼25 years. Both probabilities remained low before increasing at ∼75 years since disturbance. The increase in colonization probability >75 years since disturbance may have been an artifact of our study design and incomplete disturbance records. We also found that latitude and longitude significantly affected colonization probability, likely a result of how habitat types are distributed across the base. These results inform how Prairie Warblers respond to long-term management, suggesting that habitat management could improve colonization rates and sustain Prairie Warbler populations.

Massachusetts

Common Terns (Sterna hirundo) use of a staging site in the Chesapeake Bay

In 2021, we initiated fieldwork to assess the relative importance of a staging area for Sterna hirundo (Common Tern) at a pier at the confluence of the Patuxent River and Chesapeake Bay, MD. During the post-breeding periods of 2021 through 2023, we resighted 378 banded Common Terns at this staging area, with individuals originating from 6 breeding colonies. Most banded individuals were from Poplar Island, a major nesting site 50 km north of the pier, with up to 37% of that island's annual hatch-year population observed at this staging area. Additionally, biologists have previously observed staging terns at this site, suggesting these observations do not reflect a change in the species' behavior within the region. Cumulatively, our data suggest that this habitat acts as an important staging area for the Chesapeake Bay's Common Tern population, particularly for those nesting on Poplar Island.

Maryland