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USGS2024

Exploring spatial and temporal symptoms of the freshwater salinization syndrome in a rural to urban watershed

The freshwater salinization syndrome (FSS), a concomitant watershed-scale increase in salinity, alkalinity, and major-cation and trace-metal concentrations, over recent decades, has been described for major rivers draining extensive urban areas, yet few studies have evaluated temporal and spatial FSS variations, or causal factors, at the subwatershed scale in mixed-use landscapes. This study examines the potential influence of land-use practices and wastewater treatment plant (WWTP) effluent on the export of major ions and trace metals from the mixed-use East Branch Brandywine Creek watershed in southeastern Pennsylvania, during the 2019 water year. Separate analysis of baseflow and stormflow subsets revealed similar correlations among land-use characteristics and streamwater chemistry. Positive associations between percent impervious surface cover, which ranged from 1.26 % to 21.9 % for the 13 sites sampled, and concentrations of Ca 2+ , Mg 2+ , Na + , and Cl − are consistent with road-salt driven reverse cation exchange and weathering of the built environment. The relative volume of upstream WWTP was correlated with Cu and Zn, which may be derived in part from corroded water-conveyance infrastructure; chloride to sulfate mass ratios (CSMR) ranged from ~6.3 to ~7.7× the 0.5 threshold indicating serious corrosivity potential. Observed exceedances of U.S. Environmental Protection Agency Na + and Cl − drinking water and aquatic life criteria occurred in winter months. Finally, correlations between percent cultivated cropland and As and Pb concentrations may be explained by the persistence of agricultural pesticides that had been used historically. Study results contribute to the understanding of FSS solute origin, fate, and transport in mixed-use watersheds, particularly those in road salt-affected regions. Study results also emphasize the complexity of trace-metal source attribution and explore the potential for FSS solutes to affect human health, aquatic life, and infrastructure.

Pennsylvania↗

USGS2019

Phenology of hatching, emergence, and end-of-season body size in young-of-year Coho Salmon in thermally contrasting streams draining the Copper River Delta, Alaska

Phenology can be linked to individual fitness, particularly in strongly seasonal environments where the timing of events have important consequences for growth, condition, and survival. We studied the phenology of Coho Salmon hatching and emergence in streams with contrasting thermal variability, but in close geographic proximity. Following emergence, we tracked body sizes of cohorts of young-of-year fish until the end of the growing season. Hatch and emergence timing occurred at the same time among streams with marked variability in thermal regimes. We demonstrate that this can be explained in part by the thermal units accumulated during embryo development. At the end of the first growing season there were some differences in body size, however overall fish size among streams were similar despite strong differences in thermal regimes. Collectively these results provide novel insights into the interactions between environmental variability and the early life-history stages of Coho Salmon furthering our understanding of the consequences of phenology on growth and survival for individuals within the critical first summer of life.

Alaska↗

USGS2022

Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2021

Greater sage-grouse ( Centrocercus urophasianus ) are at the center of state and national land use policies largely because of their unique life-history traits as an ecological indicator for health of sagebrush ecosystems. This updated population trend analysis provides state and federal land and wildlife managers with best-available science to help guide current management and conservation plans aimed at benefitting sage-grouse populations. This analysis relied on previously published population trend modeling methodology from Coates and others (2021) and includes the addition of three analytical updates: (1) identification of population nadirs (lowest points within cycles) at the lek (breeding ground) and neighborhood cluster (group of leks) spatial scales, (2) truncation of prior distributions on rate of change in apparent abundance values to more realistic boundaries for leks with missing data, and (3) addition of 2 years of population lek count data (2020 and 2021) to the current dataset (1953–2021). Bayesian state-space models estimated 2.9 percent average annual decline in sage-grouse populations across their geographical range, which varied among subpopulations at the largest scale of analysis, termed climate clusters (2.2–4.6). Cumulative declines were 42.5, 65.6, and 80.1 percent range-wide across short (19 years), medium (35 years), and long (55 years) temporal periods, respectively. These results indicate that range-wide populations continued to decline during 2020 and 2021, although two climate clusters (eastern area and Bi-State area) have shown growth in population abundance in recent years, indicating they have surpassed a recent population abundance nadir.

Data Report↗

USGS2023

Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2022

Greater sage-grouse ( Centrocercus urophasianus ) are at the center of state and national land-use policies largely because of their unique life-history traits as an ecological indicator for health of sagebrush ecosystems. This updated population trend analysis provides state and federal land and wildlife managers with best-available science to help guide current management and conservation plans aimed at benefitting sage-grouse populations. This analysis relied on previously published population trend modeling methodology from Coates and others (2021, 2022a) and incorporated population lek count data through 2022. Bayesian state-space models estimated 2.9 percent average annual decline in sage-grouse populations across their geographical range, which varied among subpopulations at the largest scale of analysis, termed climate clusters (2.2–4.7). Cumulative declines were 40.9, 65.0, and 79.6 percent range-wide across short (19 years), medium (35 years), and long (55 years) temporal periods, respectively. These results indicate that the most recent nadir for range-wide populations occurred during 2021. However, growth during 2022 was modest, making 2021 a tentative final nadir at this point.

Data Report↗

USGS2024

Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2023

Greater sage-grouse ( Centrocercus urophasianus ) are at the center of state and national land-use policies largely because of their unique life-history traits as an ecological indicator for health of sagebrush ecosystems. This updated population trend analysis provides state and federal land and wildlife managers with best-available science to help guide management and conservation plans aimed at benefitting sage-grouse populations. This analysis relied on previously published population trend modeling methodology from Coates and others (2021, 2022a) and incorporates population lek count data for 1960–2023. Included in this update are changes in terminology. Specifically, we now use the terms Period 1 (previously Long), Period 2 (previously Medium/Long), Period 3 (previously Medium), Period 4 (previously Short/Medium), Period 5 (previously Short), and Period 6 (previously Recent) to identify specific trends. State-space models estimated 2.8-percent average annual decline in sage-grouse populations between 1966 and 2021 (Period 1, six population oscillations) across their geographical range. Average annual decline among climate clusters for the same number of oscillations ranged between 2.1 and 3.1 percent. Cumulative declines were 41.1, 64.5, and 78.4 percent range-wide during Period 5 (19 years), Period 3 (35 years), and Period 1 (55 years), respectively. Population growth during 2022 and 2023 continue to point to 2021 as the most recent range-wide nadir.

Data Report↗

USGS2026

Range-wide population trend analysis for greater sage-grouse ( Centrocercus urophasianus )—Updated 1960–2025

Greater sage-grouse ( Centrocercus urophasianus ; hereafter sage-grouse) are at the center of State and national land-use policies largely because of their unique life-history traits as an ecological indicator for the health of sagebrush ecosystems. This updated population analysis provides State and Federal land and wildlife managers with the best available science to help guide management and conservation plans aimed at benefitting sage-grouse populations and the ecosystems they inhabit. This analysis relied on previously published population modeling methodology from Coates and others (2021, 2022a) and incorporates population lek count data for 1960–2025. Included in this report are methodological updates to period terminology, expanded reporting of trends across all nadir-to-nadir combinations, and revised extirpation probability estimation that utilizes every historic population nadir to forecast abundance. Each of these updates are detailed under individual Modification sections. Additional updates include simulation analyses that evaluate the effects of progressively longer exclusions of Wyoming lek count data (Wyoming Game and Fish Department has not provided access to a complete lek count data set since 2023) on trends, extirpation probabilities, and targeted annual warning system signals. State-space models estimated a 2.7-percent average annual decline in sage-grouse populations between 1966 and 2021 (Period 1–7, six population oscillations) across their geographical range. The average annual decline among climate clusters for the same number of oscillations ranged between 2.0 and 3.5 percent. Cumulative declines were 42.4, 61.7, and 77.9 percent range-wide in Period 5–7 (19 years [two oscillations]), Period 3–7 (36 years [four oscillations]), and Period 1–7 (55 years), respectively. Between 2024 and 2025 (1-year, non-trend timeframe), range-wide population size declined 1.9 percent ( 95-percent credible interval [CRI]= −4.71–1.48). Simulations of missing data from Wyoming showed that progressively longer gaps produced more negative trend estimates and higher extirpation probabilities, predominantly within Wyoming. Effects on targeted annual warning system signals were more nuanced, with missed warnings occurring inside and outside Wyoming and false warnings occurring predominantly within Wyoming.

California, Colorado, Idaho, Montana, Nevada, Nort↗

USGS2024

Great Lakes lake trout (Salvelinus namaycush) thiamine monitoring program annual report

Thiamine deficiency in lake trout eggs has been identified to induce early life-stage mortality in the Great Lakes in the 1960s through the 1990s and potentially affecting lake trout recruitment. As a results, the U.S. Geological Survey’s Great Lakes Science Center (GLSC), Eastern Ecological Science Center, and Columbia Environmental Research Center (CERC), and the State University of New York (SUNY) Brockport, in collaboration with partner agencies, have conducted a cooperative program to monitor thiamine concentrations in lake trout Salvelinus namaycush eggs since the late 1990s. In 2023, egg thiamine concentrations were highly variable at each sampling site. No egg samples with thiamine concentrations less than the 4 nmol/g threshold recommended for successful lake trout reproduction were collected in Lakes Superior or Huron. In contrast, 3 to 52% of the lake trout collected at sites in Lakes Michigan, Huron, Ontario and Champlain, and Cayuga Lake had eggs below 4 nmol/g. Time series of mean lake trout egg thiamine concentrations showed high temporal and spatial variability within the Great Lakes region.

Cayuga Lake, Lake Champlain, Lake Erie, Lake Huron↗

USGS2009

U.S. Geological Survey (USGS) Western Region: Seabirds coastal and ocean science

From the cold, high Arctic area of Alaska to the warm, tropical Pacific area of Hawai'i, a diverse array of seabird species numbering in the millions of individuals live off the bounty of the Pacific Ocean. Many come to land only to nest and raise their young - these are species supremely adapted for life on the water, whether it be near the coast or hundreds of miles at sea. Those seabirds that reside in the North Pacific year-round are joined each summer by millions of migrant birds that leave the southern hemisphere in winter for better feeding conditions in the north. Seabirds in the Pacific remain one of the great wildlife spectacles on the earth. Yet, seabirds face a number of threats such as oil spills, introduction of predators to their nesting islands, and conflicts with fisheries. State and Federal agencies require increasingly sophisticated information on population dynamics, breeding biology, and feeding ecology to successfully manage these species and their ecosystems. Within the Western Region of the USGS, scientists from the Alaska Science Center (ASC), Western Ecological Research Center (WERC), and Pacific Islands Ecosystems Research Center are leading the way in conducting research on many of these little known species. Their aim is to improve our understanding of seabirds in the Pacific and to provide information to support informed management of the birds and their ecosystems.

Fact Sheet↗

USGS2013

Monitoring sea lamprey pheromones and their degradation using rapid stream-side extraction coupled with UPLC-MS/MS

Pheromones guide adult sea lamprey (Petromyzon marinus) to suitable spawning streams and mates, and therefore, when quantified, can be used to assess population size and guide management. Here, we present an efficient sample preparation method where 100 mL of river water was spiked with deuterated pheromone as an internal standard and underwent rapid field-based SPE and elution in the field. The combination of field extraction with laboratory UPLC-MS/MS reduced the sample consumption from 1 to 0.1 L, decreased the sample process time from more than 1 h to 10 min, and increased the precision and accuracy. The sensitivity was improved more than one order of magnitude compared with the previous method. The influences of experimental conditions were assessed to optimize the separation and peak shapes. The analytical method has been validated by studies of stability, selectivity, precision, and linearity and by the determination of the limits of detection and quantification. The method was used to quantify pheromone concentration from five streams tributary to Lake Ontario and to estimate that the environmental half-life of 3kPZS is about 26 h.

Journal of Separation Science↗

USGS2022

Importance of nonindigenous harpacticoids (Crustacea: Copepoda) decrease with depth in Lake Ontario

Harpacticoid copepods can be a substantial component of the meiobenthic community in lakes and serve an ecological role as detritivores. Here we present the first species-level lake-wide quantitative assessment of the harpacticoid assemblage of Lake Ontario with emphasis on the status of nonindigenous species. Additionally, we provide COI-5P sequences of harpacticoid taxa through Barcode of Life Data System (BOLD). Harpacticoids were collected at depths from 0.1 to 184 m and from a range of substrates from August to September 2018 as part of the Cooperative Science and Monitoring Initiative (CSMI) offshore benthic survey. Twenty-six meiobenthic samples were analyzed using microscopy for community composition analysis of harpacticoids. We found thirteen indigenous and three nonindigenous species of harpacticoid, with the introduced species dominating at shallow depths. The community transitioned from nonindigenous to indigenous species dominance as depth increased. Nonindigenous species accounted for 79% of the community (by abundance) at depths <20 m, 55% from 20 to 40 m, and only 24% at depths >40 m. The nonindigenous species encountered included the first detections of Schizopera borutzkyi (Monchenko, 1967) and Heteropsyllus nunni (Coull, 1975) from Lake Ontario. S. borutzkyi was the most abundant harpacticoid species in the lake, approaching a maximum density of 50,000/m 2 and a lake-wide average density of 7,900/m 2 . Numerically important indigenous species included Bryocamptus nivalis (Willey, 1925), Canthocamptus robertcokeri (Wilson, 1958), Canthocamptus staphylinoides (Pearse, 1905), and Moraria cristata (Chappuis, 1929). The prevalence of nonindigenous harpacticoids in the meiobenthos of Lake Ontario suggests further investigations of Great Lakes meiofauna communities are warranted.

Lake Ontario↗

USGS1998

Three-compartment model for contaminant accumulation by semipermeable membrane devices

Passive sampling of dissolved hydrophobic contaminants with lipid (triolein)-containing semipermeable membrane devices (SPMDs) has been gaining acceptance for environmental monitoring. Understanding of the accumulation process has employed a simple polymer film-control model of uptake by the polymer-enclosed lipid, while aqueous film control has been only briefly discussed. A more complete three-compartment model incorporating both aqueous film (turbulent-diffusive) and polymer film (diffusive) mass transfer is developed here and is fit to data from accumulation studies conducted in constant-concentration, flow-through dilutors. This model predicts aqueous film control of the whole device for moderate to high K ow compounds, rather than polymer film control. Uptake rates for phenanthrene and 2,2‘,5,5‘-tetrachlorobiphenyl were about 4.8 and 4.2 L/day/standard SPMD, respectively. Maximum 28 day SPMD concentration factors of 30 000 are predicted for solutes with log K ow values of >5.5. Effects of varying aqueous and polymer film thicknesses and solute diffusivities in the polymer film are modeled, and overall accumulation by the whole device is predicted to remain under aqueous film control, although accumulation in the triolein may be subject to polymer film control. The predicted half-life and integrative response of SPMDs to pulsed concentration events is proportional to log K SPMD .

Environmental Science & Technology↗

USGS2006

Reproductive characteristics of female sea otters

Several important aspects of reproduction in the female sea otter, such as gestation, pupping frequency, period of pup dependency, and annual pupping rate, were unclear when this study was begun. We present data from 75 tagged adult females that indicate gestation is variable, but on average is about 6 months, the length of pup dependency is 6 mo, thus the pupping interval is usually 12–13 mo. Most females breed for the first time in their fifth year of life. About 85–90% of adult females pup in a given year.

Alaska, California↗

USGS2024

Differences in life history patterns of American shad, Alosa sapidissima, populations between ancestral, Atlantic coast, and non-native, Pacific coast rivers of North America

Organisms naturalized outside their native range can reveal new life history patterns in new environments. Here, we compare life history patterns of American shad, Alosa sapidissima, from five rivers along the U.S. Pacific coast (introduced range) with contemporary data from the Atlantic coast source populations. The Pacific coast fish grew slower, matured at a younger age, and were less often iteroparous than conspecifics from the Hudson River and Susquehanna River sources. Differences among the Pacific coast populations indicated that some combination of phenotypic plasticity and genetic adaptation has occurred since the transplants in the 1870s. Microchemical analysis of otoliths from returning adults demonstrated an immature, extended freshwater life history form, locally known as “mini-shad”. These fish remain in the river for at least 1 year or enter salt water briefly and then return to fresh water for several months prior to subsequent seaward migration and return as adults. This and other forms of variation (extent of estuary use and size at sea water entry) expand the understanding of Alosine migration and life history diversity.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2011

Electronic tags and genetics explore variation in migrating steelhead kelts (oncorhynchus mykiss), Ninilchik river, Alaska

Acoustic and archival tags examined freshwater and marine migrations of postspawn steelhead kelts (Oncorhynchus mykiss) in the Ninilchik River, Alaska, USA. Postspawn steelhead were captured at a weir in 2002-2005. Scale analysis indicated multiple migratory life histories and spawning behaviors. Acoustic tags were implanted in 99 kelts (2002-2003), and an array of acoustic receivers calculated the average speed of outmigration, timing of saltwater entry, and duration of residency in the vicinity of the river mouth. Ocean migration data were recovered from two archival tags implanted in kelts in 2004 (one male and one female). Archival tags documented seasonal differences in maximum depth and behavior with both fish spending 97% of time at sea <6 m depth (day and night). All study fish were double tagged with passive integrated transponder (PIT) tags implanted in the body cavity. Less than 4% of PIT tags were retained in postspawn steelhead. Molecular genetics demonstrated no significant differences in genetic population structure across years or among spawning life history types, suggesting a genetically panmictic population with highly diverse life history characteristics in the Ninilchik River.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2025

Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2024

California, Colorado, Idaho, Montana, Nevada, Nort↗

USGS1996

U.S. Geological Survey Programs in Minnesota

The U.S. Geological Survey (USGS) maps, describes, and seeks to understand Minnesota's mineral, water, and biological resources. The USGS is known for impartial data collection and data interpretation that enable resource planners and others to make informed decisions. Today's issues are more pressing than ever - understanding natural hazards to minimize their effects on life and property, the continuing need for mineral- and water-resource development, and understanding the effects of human activities on water resources. As the Nation's leading natural-science agency, the USGS works with other Federal agencies and State and local agencies in addressing these issues. Watershed districts; soil- and water-conservation districts; Tribal governments; mining industries; educators; city, county, regional, State, and Federal planning agencies; consulting firms; crop consultants; farmers; and other private citizens use USGS maps, interpretive reports, and data to manage Minnesota's resources.

Fact Sheet↗

USGS2003

Athena Mars rover science investigation

Each Mars Exploration Rover carries an integrated suite of scientific instruments and tools called the Athena science payload. The primary objective of the Athena science investigation is to explore two sites on the Martian surface where water may once have been present, and to assess past environmental conditions at those sites and their suitability for life. The remote sensing portion of the payload uses a mast called the Pancam Mast Assembly (PMA) that provides pointing for two instruments: the Panoramic Camera (Pancam), and the Miniature Thermal Emission Spectrometer (Mini‐TES). Pancam provides high‐resolution, color, stereo imaging, while Mini‐TES provides spectral cubes at mid‐infrared wavelengths. For in‐situ study, a five degree‐of‐freedom arm called the Instrument Deployment Device (IDD) carries four more tools: a Microscopic Imager (MI) for close‐up imaging, an Alpha Particle X‐Ray Spectrometer (APXS) for elemental chemistry, a Mössbauer Spectrometer (MB) for the mineralogy of Fe‐bearing materials, and a Rock Abrasion Tool (RAT) for removing dusty and weathered surfaces and exposing fresh rock underneath. The payload also includes magnets that allow the instruments to study the composition of magnetic Martian materials. All of the Athena instruments have undergone extensive calibration, both individually and using a set of geologic reference materials that are being measured with all the instruments. Using a MER‐like rover and payload in a number of field settings, we have devised operations processes that will enable us to use the MER rovers to formulate and test scientific hypotheses concerning past environmental conditions and habitability at the landing sites.

Journal of Geophysical Research E: Planets↗

USGS2003

Athena Mars rover science investigation

Each Mars Exploration Rover carries an integrated suite of scientific instruments and tools called the Athena science payload. The primary objective of the Athena science investigation is to explore two sites on the Martian surface where water may once have been present, and to assess past environmental conditions at those sites and their suitability for life. The remote sensing portion of the payload uses a mast called the Pancam Mast Assembly (PMA) that provides pointing for two instruments: the Panoramic Camera (Pancam), and the Miniature Thermal Emission Spectrometer (Mini-TES). Pancam provides high-resolution, color, stereo imaging, while Mini-TES provides spectral cubes at mid-infrared wavelengths. For in-situ study, a five degree-of-freedom arm called the Instrument Deployment Device (IDD) carries four more tools: a Microscopic Imager (MI) for close-up imaging, an Alpha Particle X-Ray Spectrometer (APXS) for elemental chemistry, a Mo??ssbauer Spectrometer (MB) for the mineralogy of Fe-bearing materials, and a Rock Abrasion Tool (RAT) for removing dusty and weathered surfaces and exposing fresh rock underneath. The payload also includes magnets that allow the instruments to study the composition of magnetic Martian materials. All of the Athena instruments have undergone extensive calibration, both individually and using a set of geologic reference materials that are being measured with all the instruments. Using a MER-like rover and payload in a number of field settings, we have devised operations processes that will enable us to use the MER rovers to formulate and test scientific hypotheses concerning past environmental conditions and habitability at the landing sites. Copyright 2003 by the American Geophysical Union.

Journal of Geophysical Research E: Planets↗