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162 records · Page 9Linked to original sources
USGS1999

Applications and issues of GIS as tool for civil engineering modeling

A tool that has proliferated within civil engineering in recent years is geographic information systems (GIS). The goal of a tool is to supplement ability and knowledge that already exists, not to serve as a replacement for that which is lacking. To secure the benefits and avoid misuse of a burgeoning tool, engineers must understand the limitations, alternatives, and context of the tool. The common benefits of using GIS as a supplement to engineering modeling are summarized. Several brief case studies of GIS modeling applications are taken from popular civil engineering literature to demonstrate the wide use and varied implementation of GIS across the discipline. Drawing from the case studies, limitations regarding traditional GIS data models find the implementation of civil engineering models within current GIS are identified and countered by discussing the direction of the next generation of GIS. The paper concludes by highlighting the potential for the misuse of GIS in the context of engineering modeling and suggests that this potential can be reduced through education and awareness. The goal of this paper is to promote awareness of the issues related to GIS-based modeling and to assist in the formulation of questions regarding the application of current GIS. The technology has experienced much publicity of late, with many engineers being perhaps too excited about the usefulness of current GIS. An undoubtedly beneficial side effect of this, however, is that engineers are becoming more aware of GIS and, hopefully, the associated subtleties. Civil engineers must stay informed of GIS issues and progress, but more importantly, civil engineers must inform the GIS community to direct the technology development optimally.

Journal of Computing in Civil Engineering↗
USGS1985

Maceral distributions in Illinois coals and their paleoenvironmental implications

For purposes of assessing the maceral distribution of Illinois (U.S.A.) coals analyses were assembled for 326 face channel and drill core samples from 24 coal members of the Pennsylvanian System. The inertinite content of coals from the Missourian and Virgilian Series averages 16.1% (mineral free), compared to 9.4% for older coals from the Desmoinesian and older Series. This indicates there was generally a higher state of oxidation in the peat that formed the younger coals. This state probably resulted from greater exposure of these peats to weathering as the climate became drier and the water table lower than was the case for the older coals, although oxidation during allochthonous deposition of inertinite components is a genetic factor that needs further study to confirm the importance of the climate. Regional variation of the vitrinite-inertinite ratio (V-I), on a mineral- and micrinite-free basis, was observed in the Springfield (No. 5) and Herrin (No. 6) Coal Members to be related to the geographical position of paleochannel (river) deposits known to have been contemporaneous with the peats that formed these two coal strata. The V-I ratio is highest (generally 12–27) in samples from areas adjacent to the channels, and lower (5–11) some 10–20 km away. We interpret the V-I ratio to be an inverse index of the degree of oxidation to which the original peat was exposed. High V-I ratio coal located near the channels probably formed under more anoxic conditions than did the lower V-I ratio coal some distance away from the channels. The low V-I ratio coal probably formed in areas of the peat swamp where the watertable was generally lower than the channel areas.

International Journal of Coal Geology↗
USGS2007

Mars global digital dune database and initial science results

A new Mars Global Digital Dune Database (MGD 3 ) constructed using Thermal Emission Imaging System (THEMIS) infrared (IR) images provides a comprehensive and quantitative view of the geographic distribution of moderate‐ to large‐size dune fields (area >1 km 2 ) that will help researchers to understand global climatic and sedimentary processes that have shaped the surface of Mars. MGD 3 extends from 65°N to 65°S latitude and includes ∼550 dune fields, covering ∼70,000 km 2 , with an estimated total volume of ∼3,600 km 3 . This area, when combined with polar dune estimates, suggests moderate‐ to large‐size dune field coverage on Mars may total ∼800,000 km 2 , ∼6 times less than the total areal estimate of ∼5,000,000 km 2 for terrestrial dunes. Where availability and quality of THEMIS visible (VIS) or Mars Orbiter Camera narrow‐angle (MOC NA) images allow, we classify dunes and include dune slipface measurements, which are derived from gross dune morphology and represent the prevailing wind direction at the last time of significant dune modification. For dunes located within craters, the azimuth from crater centroid to dune field centroid (referred to as dune centroid azimuth) is calculated and can provide an accurate method for tracking dune migration within smooth‐floored craters. These indicators of wind direction are compared to output from a general circulation model (GCM). Dune centroid azimuth values generally correlate to regional wind patterns. Slipface orientations are less well correlated, suggesting that local topographic effects may play a larger role in dune orientation than regional winds.

Journal of Geophysical Research E: Planets↗
USGS2009

The changing global carbon cycle: Linking plant-soil carbon dynamics to global consequences

Most current climate-carbon cycle models that include the terrestrial carbon (C) cycle are based on a model developed 40 years ago by Woodwell & Whittaker (1968) and omit advances in biogeochemical understanding since that time. Their model treats net C emissions from ecosystems as the balance between net primary production (NPP) and heterotrophic respiration (HR, i.e. primarily decomposition). Under conditions near steady state, geographic patterns of decomposition closely match those of NPP, and net C emissions are adequately described as a simple balance of NPP and HR (the Woodwell-Whittaker model). This close coupling between NPP and HR occurs largely because of tight coupling between C and N (nitrogen) cycles and because NPP constrains the food available to heterotrophs. Processes in addition to NPP and HR become important to understanding net C emissions from ecosystems under conditions of rapid changes in climate, hydrology, atmospheric CO 2 , land cover, species composition and/or N deposition. Inclusion of these processes in climate-C cycle models would improve their capacity to simulate recent and future climatic change. Processes that appear critical to soil C dynamics but warrant further research before incorporation into ecosystem models include below-ground C flux and its partitioning among roots, mycorrhizas and exudates; microbial community effects on C sequestration; and the effects of temperature and labile C on decomposition. The controls over and consequences of these processes are still unclear at the ecosystem scale. Carbon fluxes in addition to NPP and HR exert strong influences over the climate system under conditions of rapid change. These fluxes include methane release, wildfire, and lateral transfers of food and fibre among ecosystems. Water and energy exchanges are important complements to C cycle feedbacks to the climate system, particularly under non-steady-state conditions. An integrated understanding of multiple ecosystem-climate feedbacks provides a strong foundation for policies to mitigate climate change. Synthesis . Current climate systems models that include only NPP and HR are inadequate under conditions of rapid change. Many of the recent advances in biogeochemical understanding are sufficiently mature to substantially improve representation of ecosystem C dynamics in these models.

Journal of Ecology↗
USGS2011

Seasonal habitat use and selection by grizzly bears in Northern British Columbia

We defined patterns of habitat use and selection by female grizzly bears (Ursus arctos) in the Besa-Prophet watershed of northern British Columbia. We fitted 13 adult females with Geographic Positioning System (GPS) radio-collars and monitored them between 2001 and 2004. We examined patterns of habitat selection by grizzly bears relative to topographical attributes and 3 potential surrogates of food availability: land-cover class, vegetation biomass or quality (as measured by the Normalized Difference Vegetation Index), and selection value for prey species themselves (moose [Alces alces], elk [Cervus elaphus], woodland caribou [Rangifer tarandus]. Stone's sheep [Ovis dalli stonei]). Although vegetation biomass and quality, and selection values for prey were important in seasonal selection by some individual bears, land-cover class, elevation, aspect, and vegetation diversity most influenced patterns of habitat selection across grizzly bears, which rely on availability of plant foods and encounters with ungulate prey. Grizzly bears as a group avoided conifer stands and areas of low vegetation diversity, and selected for burned land-cover classes and high vegetation diversity across seasons. They also selected mid elevations from what was available within seasonal ranges. Quantifying relative use of different attributes helped place selection patterns within the context of the landscape. Grizzly bears used higher elevations (1,595 ± 31 m SE) in spring and lower elevations (1,436 ± 27 m) in fall; the range of average elevations used among individuals was highest (500 m) during the summer. During all seasons, grizzly bears most frequented aspects with high solar gain. Use was distributed across 10 land-cover classes and depended on season. Management and conservation actions must maintain a diverse habitat matrix distributed across a large elevational gradient to ensure persistence of grizzly bears as levels of human access increase in the northern Rocky Mountains.

Northern British Columbia↗
USGS2002

Quantifying flow-dependent changes in subyearling fall chinook salmon rearing habitat using two-dimensional spatially explicit modeling

We used an analysis based on a geographic information system (GIS) to determine the amount of rearing habitat and stranding area for subyearling fall chinook salmon Oncorhynchus tshawytscha in the Hanford Reach of the Columbia River at steady-state flows ranging from 1,416 to 11,328 m3/s. High-resolution river channel bathymetry was used in conjunction with a two-dimensional hydrodynamic model to estimate water velocities, depths, and lateral slopes throughout our 33-km study area. To relate the probability of fish presence in nearshore habitats to measures of physical habitat, we developed a logistic regression model from point electrofishing data. We only considered variables that were compatible with a GIS and therefore excluded other variables known to be important to juvenile salmonids. Water velocity and lateral slope were the only two variables included in our final model. The amount of available rearing habitat generally decreased as flow increased, with the greatest decreases occurring between 1,416 and 4,814 m3/s. When river discharges were between 3,682 and 7,080 m3/s, flow fluctuations of 566 m3/s produced the smallest change in available rearing area (from -6.3% to +6.8% of the total). Stranding pool area was greatly reduced at steady-state flows exceeding 4,531 m3/s, but the highest net gain in stranding area was produced by 850 m3/s decreases in flow when river discharges were between 5,381 and 5,664 m3/s. Current measures to protect rearing fall chinook salmon include limiting flow fluctuations at Priest Rapids Dam to 850 m3/s when the dam is spilling water and when the weekly flows average less than 4,814 m3/s. We believe that limiting flow fluctuations at all discharges would further protect subyearling fall chinook salmon.

Washington↗
USGS2008

Fish assemblages of the Casiquiare River, a corridor and zoogeographical filter for dispersal between the Orinoco and Amazon basins

Aim: The aim of this study was to determine whether the Casiquiare River functions as a free dispersal corridor or as a partial barrier (i.e. filter) for the interchange of fish species of the Orinoco and Negro/Amazon basins using species assemblage patterns according to geographical location and environmental features. Location: The Casiquiare, Upper Orinoco and Upper Negro rivers in southern Venezuela, South America. Methods: Our study was based on an analysis of species presence/absence data and environmental information (11 habitat characteristics) collected by the authors and colleagues between the years 1984 and 1999. The data set consisted of 269 sampled sites and 452 fish species (> 50,000 specimens). A wide range of habitat types was included in the samples, and the collection sites were located at various points along the entire length of the Casiquiare main channel, at multiple sites on its tributary streams, as well as at various nearby sites outside the Casiquiare drainage, within the Upper Orinoco and Upper Rio Negro river systems. Most specimens and field data used in this analysis are archived in the Museo de Ciencias Naturales in Guanare, Venezuela. We performed canonical correspondence analysis (CCA) based on species presence/absence using two versions of the data set: one that eliminated sites having < 5 species and species occurring at < 5 sites; and another that eliminated sites having < 10 species and species occurring at < 10 sites. Cluster analysis was performed on sites based on species assemblage similarity, and a separate analysis was performed on species based on CCA loadings. Results: The CCA results for the two versions of the data set were qualitatively the same. The dominant environmental axis contrasted assemblages and sites associated with blackwater vs. clearwater conditions. Longitudinal position on the Casiquiare River was correlated (r2 = 0.33) with CCA axis-1 scores, reflecting clearwater conditions nearer to its origin (bifurcation of the Orinoco) and blackwater conditions nearer to its mouth (junction with the Rio Negro). The second CCA axis was most strongly associated with habitat size and structural complexity. Species associations derived from the unweighted pair-group average clustering method and pair-wise squared Euclidean distances calculated from species loadings on CCA axes 1 and 2 showed seven ecological groupings. Cluster analysis of species assemblages according to watershed revealed a stronger influence of local environmental conditions than of geographical proximity. Main conclusions: Fish assemblage composition is more consistently associated with local environmental conditions than with geographical position within the river drainages. Nonetheless, the results support the hypothesis that the mainstem Casiquiare represents a hydrochemical gradient between clearwaters at its origin and blackwaters at its mouth, and as such appears to function as a semi-permeable barrier (environmental filter) to dispersal and faunal exchanges between the partially vicariant fish faunas of the Upper Orinoco and Upper Negro rivers. ?? 2008 The Authors.

Journal of Biogeography↗
USGS2022

Postbreeding movements and molting ecology of female gadwalls and mallards

The wing molt is an important annual life-history event that occurs in waterfowl and molt site selection can play an important role in determining survival. We tracked postbreeding movements of gadwall ( Mareca strepera ) and mallard ( Anas platyrhynchos ) females that bred in the Suisun Marsh (Suisun) of California, USA, to determine molt site selection and wing molt chronology. We attached backpack transmitters with global positioning system and global system for mobile communications (GPS-GSM) technology to female gadwalls and mallards within Suisun and tracked the birds following the breeding season during 2015–2018. We determined molt locations for 52 female gadwalls and 112 female mallards. Thirty of the marked gadwall females selected 2 regions within southern Oregon-northeastern California (SONEC) to undergo molt; 16 molted in the Upper Klamath Basin (southern OR) and 14 in the Lower Klamath Basin (northeastern CA). A large portion of female mallards molted in Suisun ( n = 34) and the Sacramento Valley in California ( n = 31) but also used the Upper Klamath Basin ( n = 13), Lower Klamath Basin ( n = 12), and the Yolo–Delta region in California ( n = 12). On average, gadwalls departed Suisun on 30 July (±17.82 days [SD]), and mallards departed on 24 July (±22.69 days). Mean start date of molt for each species was similar: 27 August (±16.09 days) for gadwalls and 26 August (±21.03 days) for mallards. Molt end date was analogous for each species as well. Molt ended on average 1 October (±15.52 days) for gadwalls and on 5 October (±18.34 days) for mallards. Gadwalls and mallards showed intraspecific differences in average molt start and end date within the 3 main geographical zones: Suisun, Central Valley of California (Central Valley), and SONEC. Mean duration of wing molt for gadwalls was 34.72± 8.62 days and 41.09 ± 12.54 days for mallards. Both species primarily selected permanent marsh to undergo wing molt (gadwalls = 90.4%, mallards = 63.4%). Conservation and active management of these high-use molting areas used by California's primary breeding waterfowl species could enhance postbreeding survival, leading to increased breeding waterfowl populations.

California, Nevada, Oregon↗
USGS1970

Annotated bibliography on artificial recharge of ground water, 1955-67

Artificial ground-water recharge has become more important as water use by agriculture, industry, and municipalities increases. Water management agencies are increasingly interested in potential use of recharge for pollution abatement, waste-water disposal, and re-use and reclamation of locally available supplies. Research projects and theoretical analyses of operational recharge systems show increased scientific emphasis on the practice. Overall ground-water basin management systems generally now contain considerations of artificial recharge, whether by direct or indirect methods. Artificial ground-water recharge is a means of conserving surface runoff for future use in places where it would otherwise be lost, of protecting ground-water basins from salt-water encroachment along coastal areas, and of storing and distributing imported water. The biblio-graphy emphasizes technology; however, annotations of articles on waste-water reclamation, ground-water management and ground-water basin management are included. Subjects closely related to artificial recharge, including colloidal flow through porous media, field or laboratory instrumentation, and waste disposal by deep well injection are included where they specifically relate to potential recharge problems. Where almost the same material has been published in several journals, all references are included on the assumption that some publications may be more readily available to interested persons than others. Other publications, especially those of foreign literature, provided abstracts that were used freely as time limitations precluded obtaining and annotating all materials. Abstracts taken from published sources are noted. These are: "Abstracts of North American Geology," U.S. Department of the Interior, Geological Survey; "Abstracts of Recent Published Material on Foil and Water Conservation," ARS-41 series, Agricultural F.esearch Service, U.S. Department of Agriculture; "Water and1 Water Engineering," published by Fuel and Metallurgical Journals, Ltd., London, England; "Journal of Geophysical Research," American Geophysical Union, Washington, D.C.; "American Society of Civil Engineers Transactions," New York; "Selected Bibliography of Hydrology, United Kingdom, for the Years 1955-59," International Association of Scientific Hydrology; "Water Wells, an Annotated Bibliography," California University Water Resources Center Archives Report 13; "Re-use of Effluent in the Future With an Annotated Bibliography," by G. A. Whetstone, Texas Water Development Board Report 8, Austin, Tex.; "Journal of Water Pollution Control Federation," Washington, D.C.; and "A List of Selected Technical References on Artificial Recharge of Ground-Water Reservoirs," compiled by Roy W. Graves, Tulsa University, Information Services Department, Tulsa, Okla. Other notations are self-explanatory, and initials are those of the authors (DCS, DJG, WK). An unpublished compilation of recharge references by Arnon Arad sponsored by the United Nations Educational, Scientific, and Cultural Organization during a training period with the U.S. Geological Survey was also used. The bibliography is arranged alphabetically by author. Where an author has more than one publication, the arrangement is chronological; where an author has more than one publication in a given year, a, b, c, . . . are added. The indexing is by subject and geographic location. Each article was assigned the key words or phrases to best characterize its contents. Units of measure are as they were in the original article; abbreviations retained are generally those in common use such as mg/1 (milligrams per liter), ppm (parts per million), gpm (gallons per minute), km (kilometers), m (meters), cu m per hr (cubic meters p^r hour), cfs (cubic feet per second), me/1 (milliequivalents per liter), psi (pounds per square inch), BOD (biochemical oxygen demand), sq m (square meters), gpd (gallons per day), and mgd (million gallons per day). The bibliography was prepared because of the worldwide interest in the field of artificial recharge and the need for a single source of references to the literature published since 1954. The work is a sequel to the "Annotated Bibliography on Artificial Recharge of Ground Water Through 1954," by D. K. Todd, U.S. Geological Survey Water-Supply Paper 1477, published in 1959.

Water Supply Paper↗
USGS2023

Accounting for spatiotemporal sampling variation in joint species distribution models

Estimating relative abundance is critical for informing conservation and management efforts and for making inferences about the effects of environmental change on populations. Freshwater fisheries span large geographic regions, occupy diverse habitats and consist of varying species assemblages. Monitoring schemes used to sample these diverse populations often result in populations being sampled at different times and under different environmental conditions. Varying sampling conditions can bias estimates of abundance when compared across time, location and species, and properly accounting for these biases is critical for making inferences. We develop a joint species distribution model (JSDM) that accounts for varying sampling conditions due to the environment and time of sampling when estimating relative abundance. The novelty of our JSDM is that we explicitly model sampling effort as the product of known quantities based on time and gear type and an unknown functional relationship to capture seasonal variation in species life history. We use the model to study relative abundance of six freshwater fish species across the state of Minnesota, USA. Our model enables estimates of relative abundance to be compared both within and across species and lakes, and captures the inconsistent sampling present in the data. We discuss how gear type, water temperature and day of the year impact catchability for each species at the lake level and throughout a year. We compare our estimates of relative abundance to those obtained from a model that assumes constant catchability to highlight important differences within and across lakes and species. Synthesis and applications : Our method illustrates that assumptions relating indices of abundance to observed catch data can greatly impact model inferences derived from JSDMs. Specifically, not accounting for varying sampling conditions can bias inference of relative abundance, restricting our ability to detect responses to management interventions and environmental change. While our focus is on freshwater fisheries, this model architecture can be adopted to other systems where catchability may vary as a function of space, time and species.

Journal of Applied Ecology↗
USGS2026

What is the (real) rate of soil health practice adoption? Making sense of three data sources

Conservation stakeholders looking to quantify the impact of their investments to increase soil health practice adoption over time often face challenges in interpreting practice adoption data due to discrepancies in language and results among data sources. Similarly, efforts to estimate environmental outcomes of practice adoption, such as water quality and greenhouse gas emissions, can vary depending on different practice adoption input data. To help make sense of different adoption data sources, we compared county-level adoption data for winter cover crops (WCC), no-till (NT), and reduced tillage (RT) in three areas of the United States with contrasting climates and production systems: central Illinois (CIL), southern Illinois (SIL), and western New York (WNY). We analyzed data available during 2015 through 2022 from the Operational Tillage Information System (OpTIS, remote sensing), US Census of Agriculture (AgCensus, a farmer survey), and, specifically in Illinois, the Illinois Soil Conservation Transect Survey (Transect, a roadside survey). The magnitude of differences between the datasets depended on the practice and geographic location. For example, OpTIS and AgCensus tillage data were much more similar in Illinois (average difference of less than 4 percentage points) compared to New York (average differences of 20 percentage points). Similarly, there was less variability and smaller differences between OpTIS and AgCensus WCC data in Illinois compared to WNY. AgCensus tended to report lower WCC adoption for Illinois and greater adoption in WNY compared to OpTIS. All data sources agreed that the rate of change in tillage practices is slow (mainly –1% to 1%) and that adoption of WCC is low (assuming linear growth, it could take nearly a century to reach 50% WCC adoption in CIL). Differences among the datasets were attributed to definitional inconsistencies for RT and NT and how WCC data were acquired. For example, the AgCensus asks if a WCC was planted, whereas OpTIS and Transect evaluate the presence of a standing WCC. Data sources also reflect different time periods (calendar years or crop years) and types of cropland assessed (corn [ Zea mays L.], soybean [ Glycine max {L.} Merr.], or all cropland). We propose two recommendations to improve interpretation and consistency: (1) a working group to harmonize definitions and protocols and develop educational materials for data users, and (2) a research effort that integrates different adoption data types and produces publicly available adoption data at HUC-10 and county scales. Such activities could help improve data access and utility for evidence-based conservation decision-making and enhance the accuracy of environmental models that rely on adoption data as input.

Journal of Soil and Water Conservation↗
USGS2025

Greater white-fronted goose habitat use in Louisiana provides water depth management insights

Numerous waterfowl species have altered their geographic distribution in recent decades. The greater white-fronted goose ( Anser albifrons ) has shifted its wintering distribution from coastal marshes in Texas and Louisiana, USA, to interior landscapes, creating challenges for conservation managers. Although the range shift has been primarily attributed to landscape-scale changes in rice production, effects of fine-scale habitat conditions on greater white-fronted goose habitat use are unknown. Thus, information on fine-scale environmental conditions could provide information to managers working to mitigate effects of the shift. We used global positioning system neck collars to monitor 78 greater white-fronted geese in Louisiana each winter during 2016–2019 and visited all used locations to record vegetation height, water depth, and land cover. We modeled greater white-fronted goose habitat use in 4 regions across Louisiana (central, coastal, north, southwest), and evaluated effects of vegetation height, water depth, land cover, and interactions. In our candidate model set, we included a sampling null, which accounted for differences in sampling frequencies among hunt seasons and diel periods. The top model in the central, coastal, and north regions included water depth, whereas the top model in the southwest region included water depth, vegetation height, and land cover. Parameter estimates and confidence intervals indicated that goose habitat use was higher at sites with >5.1 cm of water compared to dry sites or sites with <5.1 cm of water. In the southwest region, goose habitat use was highest in areas identified as other land cover (e.g., corn, cotton, rye, sugarcane) and lowest in open water. Although Louisiana has substantial anthropogenic food resources in the form of rice agriculture and abundant grazing opportunities afforded by mild winters, our results indicate that wet areas provide better habitat to greater white-fronted geese than dry areas. New agricultural flooding regimes in Louisiana could improve habitat quality and potentially mitigate some effects of the winter distribution shift.

Louisiana↗
USGS2010

EAARL coastal topography-western Florida, post-Hurricane Charley, 2004: seamless (bare earth and submerged.

Project Description These remotely sensed, geographically referenced elevation measurements of lidar-derived seamless (bare-earth and submerged) topography were produced as a collaborative effort between the U.S. Geological Survey (USGS), Coastal and Marine Geology Program (CMGP), St. Petersburg, FL, and the National Aeronautics and Space Administration (NASA), Wallops Flight Facility, VA. This project provides highly detailed and accurate datasets of a portion of the western Florida coastline beachface, acquired post-Hurricane Charley on August 17 and 18, 2004. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar instrument originally developed at the NASA Wallops Flight Facility, and known as the Experimental Advanced Airborne Research Lidar (EAARL), was used during data acquisition. The EAARL system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometer) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, a down-looking red-green-blue (RGB) digital camera, a high-resolution multispectral color infrared (CIR) camera, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL system, and the resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed in a NASA-USGS collaboration. ALPS supports the exploration and processing of lidar data in an interactive or batch mode. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the 'bare earth' under vegetation. For more information about similar projects, please visit the Decision Support for Coastal Science and Management website. Selected References Brock, J.C., Wright, C.W., Sallenger, A.H., Krabill, W.B., and Swift, R.N., 2002, Basis and methods of NASA airborne topographic mapper Lidar surveys for coastal studies: Journal of Coastal Research, v. 18, no. 1, p. 1-13. Crane, Michael, Clayton, Tonya, Raabe, Ellen, Stoker, Jason, Handley, Larry, Bawden, Gerald, Morgan, Karen, and Queija, Vivian, 2004, Report of the U.S. Geological Survey Lidar workshop sponsored by the Land Remote Sensing Program and held in St. Petersburg, FL, November 2002: U.S. Geological Survey Open-File Report 2004-1456, 72 p. Nayegandhi, Amar, Brock, J.C., and Wright, C.W., 2009, Small-footprint, waveform-resolving Lidar estimation of submerged and sub-canopy topography in coastal environments: International Journal of Remote Sensing, v. 30, no. 4, p. 861-878. Sallenger, A.H., Wright, C.W., and Lillycrop, Jeff, 2005, Coastal impacts of the 2004 hurricanes measured with airborne Lidar; initial results: Shore and Beach, v. 73, nos. 2-3, p. 10-14. Resources Included Readme.txt File

Data Series↗
USGS2007

Linking resources with demography to understand resource limitation for bears

1. Identifying the resources that limit growth of animal populations is essential for effective conservation; however, resource limitation is difficult to quantify. Recent advances in geographical information systems (GIS) and resource modelling can be combined with demographic modelling to yield insights into resource limitation. 2. Using long-term data on a population of black bears Ursus americanus, we evaluated competing hypotheses about whether availability of hard mast (acorns and nuts) or soft mast (fleshy fruits) limited bears in the southern Appalachians, USA, during 1981-2002. The effects of clearcutting on habitat quality were also evaluated. Annual survival, recruitment and population growth rate were estimated using capture-recapture data from 101 females. The availability of hard mast, soft mast and clearcuts was estimated with a GIS, as each changed through time as a result of harvest and succession, and then availabilities were incorporated as covariates for each demographic parameter. 3. The model with the additive availability of hard mast and soft mast across the landscape predicted survival and population growth rate. Availability of young clearcuts predicted recruitment, but not population growth or survival. 4. Availability of hard mast stands across the landscape and availability of soft mast across the landscape were more important than hard mast production and availability of soft mast in young clearcuts, respectively. 5. Synthesis and applications. Our results indicate that older stands, which support high levels of hard mast and moderate levels of soft mast, should be maintained to sustain population growth of bears in the southern Appalachians. Simultaneously, the acreage of intermediate aged stands (10-25 years), which support very low levels of both hard mast and soft mast, should be minimized. The approach used in this study has broad application for wildlife management and conservation. State and federal wildlife agencies often possess long-term data on both resource availability and capture-recapture for wild populations. Combined, these two data types can be used to estimate survival, recruitment, population growth, elasticities of vital rates and the effects of resource availability on demographic parameters. Hence data that are traditionally used to understand population trends can be used to evaluate how and why demography changes over time. ?? 2007 The Authors.

Journal of Applied Ecology↗
USGS2023

Coproduction and modeling spatial contact networks prevent bias about infectious hematopoietic necrosis virus transmission for Snake River Basin salmonids

Much remains unknown about variation in pathogen transmission across the geographic range of a free-ranging fish or animal species and about the influence of movement (associated with husbandry practices or animal behavior) on pathogen transmission. Salmonid hatcheries are an ideal system in which to study these processes. Salmonid hatcheries are managed for endangered species recovery, supplementation of threatened or at-risk fish stocks, support of fisheries, and ecosystem stability. Infectious hematopoietic necrosis virus (IHNV) is a rhabdovirus of significant concern to salmon aquaculture. Landscape IHNV transmission dynamics previously had been estimated only for salmonid hatcheries in the Lower Columbia River Basin (LCRB). The objectives of this study were to estimate IHNV transmission dynamics in a unique geographic region, the Snake River Basin (SRB), and to quantitatively estimate the effect of model coproduction on inference because previous assessments of coproduction have been qualitative. In contrast to the LCRB, the SRB has hatchery complexes consisting of a main hatchery and ≥1 satellite facility. Knowledge about hatchery complexes was held by a subset of project researchers but would not have been available to project modelers without coproduction. Project modelers generated and tested multiple versions of Bayesian susceptible-exposedinfected models to realistically represent the SRB and estimate the effect of coproduction. Models estimated the frequency of transmission routes, route-specific infection probabilities, and infection probabilities for combinations of salmonid hosts and IHNV lineages. Model results indicated that in the SRB, avoiding exposure to IHNV-positive adult salmonids is the most important action to prevent juvenile infections. Migrating adult salmonids exposed juvenile cohort-sites most frequently, and the infection probability was greatest following exposure to migrating adults. Without coproduction, the frequency of exposure by migrating adults would have been overestimated by 70 cohort-sites, and the infection probability following exposure to migrating adults would have been underestimated by∼0.09. The coproduced model had less uncertainty in the infection probability if no transmission route could be identified (Bayesian credible interval (BCI) width = 0.12) compared to the model without coproduction (BCI width = 0.34). Evidence for virus lineage MD specialization on steelhead and rainbow trout (both Oncorhynchus mykiss) was apparent without model coproduction. In the SRB, we found a greater probability of virus lineage UC infection in Chinook salmon (Oncorhynchus tshawytscha) compared to in O. mykiss, whereas in the LCRB, UC more clearly exhibited a generalist approach. Coproduction influenced estimates that depended on transmission routes, which operated differently at main hatcheries and satellite sites within hatchery complexes. Hatchery complexes are found outside of the SRB and are not specific to salmonid hatcheries alone. There is great potential for coproduction and modeling spatial contact networks to advance understanding about infectious disease transmission in complex production systems and surrounding free-ranging animal populations.

Idaho, Oregon, Washington↗
USGS2015

Origins of geothermal gases at Yellowstone

Gas emissions at the Yellowstone Plateau Volcanic Field (YPVF) reflect open-system mixing of gas species originating from diverse rock types, magmas, and crustal fluids, all combined in varying proportions at different thermal areas. Gases are not necessarily in chemical equilibrium with the waters through which they vent, especially in acid sulfate terrain where bubbles stream through stagnant acid water. Gases in adjacent thermal areas often can be differentiated by isotopic and gas ratios, and cannot be tied to one another solely by shallow processes such as boiling-induced fractionation of a parent liquid. Instead, they inherit unique gas ratios (e.g., CH 4 /He) from the dominant rock reservoirs where they originate, some of which underlie the Quaternary volcanic rocks. Steam/gas ratios (essentially H 2 O/CO 2 ) of Yellowstone fumaroles correlate with Ar/He and N 2 /CO 2 , strongly suggesting that H 2 O/CO 2 is controlled by addition of steam boiled from water rich in atmospheric gases. Moreover, H 2 O/CO 2 varies systematically with geographic location, such that boiling is more enhanced in some areas than others. The &delta; 13 C and 3 He/CO 2 of gases reflect a dominant mantle origin for CO 2 in Yellowstone gas. The mantle signature is most evident at Mud Volcano, which hosts gases with the lowest H 2 O/CO 2 , lowest CH 4 concentrations and highest He isotope ratios (~16Ra), consistent with either a young subsurface intrusion or less input of crustal and meteoric gas than any other location at Yellowstone. Across the YPVF, He isotope ratios ( 3 He/ 4 He) inversely vary with He concentrations, and reflect varied amounts of long- stored, radiogenic He added to the magmatic endmember within the crust. Similarly, addition of CH4 from organic-rich sediments is common in the eastern thermal areas at Yellowstone. Overall, Yellowstone gases reflect addition of deep, high-temperature magmatic gas (CO 2 -rich), lower-temperatures crustal gases ( 4 He- and CH 4 -bearing), and those gases (N 2 , Ne, Ar) added principally through boiling of the meteoric-water-derived geothermal liquid found in the upper few kilometers. We also briefly explore the pathways by which Cl, F, and S, move through the crust.

Montana, Wyoming↗
USGS2025

Multispectral red-edge indices accurately estimate nitrogen content in winter cereal cover crops

Winter cover crops reduce erosion and nutrient runoff from agricultural systems. Although cereal cover crops can decrease field nitrate leaching by 50%–95%, the magnitude of this reduction varies within and between fields, making it challenging to monitor the impact of cover crops on nitrate leaching at large spatial extents. Satellite remote sensing using red-edge bands has been shown to effectively estimate crop nitrogen (N) content (kg ha −1 ) in later growth-stage crops with a closed canopy. In this study, we evaluated 15 spectral indices derived from Sentinel-2 imagery to estimate N concentration (%) and content (kg ha −1 ) of cereal cover crops, using 1627 destructive samples collected from 2018 to 2023 in Maryland. Observed N content ranged from 0.1 to 214.7 kg ha −1 , while N concentration ranged from 0.6% to 5.5%. The 15 indices considered were poor predictors of N concentration (adj. R 2 = 0.089, root mean squared error [RMSE] = 0.802%), but were more successful at measuring N content (biomass × N concentration). Delta red-edge (ΔRE) was the best predictor of N content (adj. R 2 = 0.748, RMSE = 13.10 kg ha −1 from cross-validation with 80% train and 20% test splits iterated 100 times) using samples with imagery collected within ±4 days of destructive sampling ( n = 1110). Our findings indicate that longer red-edge wavelengths (783 and 740 nm) are more suited for estimating N content in cereal cover crops compared to shorter red-edge wavelengths, which have been shown to be more sensitive to biomass. Leave-one-year-out cross-validation demonstrated that the relationship between ΔRE and N content was robust across all four cover crop sampling years included in the study (adj. R 2 = 0.700–0.769, RMSE = 10.70–15.40 kg ha −1 ). Regression model performance improved with the addition of multiple predictors, including biomass (estimated from Normalized Difference Vegetation Index), weather variables (adj. R 2 = 0.765, RMSE = 12.37 kg ha −1 ), management variables (species, season, adj. R 2 = 0.772, and RMSE = 12.13 kg ha −1 ), and biophysical variables (height, fractional ground cover, adj. R 2 = 0.818, and RMSE = 10.29 kg ha −1 ). These findings demonstrate the feasibility of quantifying N content in cereal cover crops using a red-edge-based spectral index across large geographic extents and indicate the inclusion of additional predictors, such as weather and management data, improves model accuracy. This work has implications for quantifying reductions in N leaching associated with cover crops, aiding in policymaking and evaluation of conservation programs that impact water bodies such as Chesapeake Bay.

Maryland↗
USGS2023

Imaging the magmatic plumbing of the Clear Lake Volcanic Field using 3-D gravity inversions

The Quaternary Clear Lake Volcanic Field (CLVF) in the Northern California Coast Range is the youngest of a string of northward-younging volcanic centers in the state. The CLVF is located within the broad San Andreas Transform Fault System and has been active intermittently for ∼2 million years. Heat beneath the CLVF supports The Geysers, one of the largest producing geothermal fields in the world. Previous geophysical studies proposed the existence of a magma reservoir beneath Mount Hannah, which is northeast of The Geysers, near the geographic center of the CLVF. The lateral extent, depth, and presence of melt within this reservoir are poorly constrained, as is the relationship between this body and the broader magmatic plumbing of the CLVF. To gain a clearer and more comprehensive picture of the CLVF magma source region, a gravity dataset was compiled and the first 3-D gravity inversions of the CLVF were completed. Field and synthetic model inversions from the current study both indicate that the gravity low roughly centered on Mount Hannah is not accurately explained by a 5–7 km thick lens of Mesozoic Great Valley Sequence ( &#x3C1; = 2.58 g/cm 3 "> �=2.58g/cm3 ) as proposed by Stanley et al. (1998) . The observed gravity low is more accurately described by one or more silicic, partial melt bodies between The Geysers and Mount Hannah. Although our inversions cannot constrain the exact depth and geometry of these bodies, the recovered models indicate the existence of a partial melt zone between 6 and 13 km depth. The prolonged eruption history of the CLVF, coupled with the compositional variation of erupted rocks over time and space, is consistent with the existence of several, potentially ephemeral, melt-bearing bodies as opposed to one large melt body. Given the density and location of the recovered anomaly, rhyolite-MELTS thermodynamic modeling suggests the existence of 10–30% rhyodacitic melt within the proposed silicic magma reservoir at about 700 °C and 8 km depth (210 MPa). Independent petrologic, geochemical, and seismic evidence indicates that this silicic partial melt zone is underlain by basaltic melt in the lower to middle crust (13 to 21 km depth), which is fed by a mantle source. Eruptions in the past ∼8.5–13.5 thousand years; high regional heat flow; 3 He enrichment of hydrothermal fluids; and our modeling, which suggests the presence of a mid-crustal, silicic partial melt zone, point to a still-active CLVF. The relatively low estimates of partial melt (10–30%) predicted by thermodynamic modeling indicates that an injection of new magma into the imaged partial melt zone is needed to generate sufficient melt to incite future eruptions. Despite the low percent melt estimates within the proposed silicic partial melt zone the potential for future volcanic eruption remains. Due to the proximity of the CLVF to cities surrounding Clear Lake and the densely populated San Francisco Bay Area, continued research and monitoring of the volcanic field are warranted. The geophysical and petrologic modeling presented here improves our understanding of the CLVF magma plumbing system and allows us to better characterize its associated volcanic hazards.

California↗