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Cyanotoxin mixture models: Relating environmental variables and toxin co-occurrence to human exposure risk

Toxic cyanobacterial blooms, often containing multiple toxins, are a serious public health issue. However, there are no known models that predict a cyanotoxin mixture (anatoxin-a, microcystin, saxitoxin). This paper presents two cyanotoxin mixture models (MIX) and compares them to two microcystin (MC) models from data collected in 2016–2017 from three recurring cyanobacterial bloom locations in Kabetogama Lake, Voyageurs National Park (Minnesota, USA). Models include those using near-real-time environmental variables (readily available) and those using additional comprehensive variables (based on laboratory analyses). Comprehensive models (R 2 = 0.87 MC; R 2 = 0.86 MIX) explained more variability than the environmental models (R 2 = 0.58 MC; R 2 = 0.57 MIX). Although neither MIX model was a better fit than the MC models, the MIX models produced no false negatives in the calibration dataset, indicating that all observations above regulatory guidelines were simulated by the MIX models. This is the first known use of Virtual Beach software for a cyanotoxin mixture model, and the methods used in this paper may be applicable to other lakes or beaches.

Minnesota

Modeling suitable habitat of invasive red lionfish Pterois volitans (Linnaeus, 1758) in North and South America’s coastal waters

We used two common correlative species-distribution models to predict suitable habitat of invasive red lionfish Pterois volitans (Linnaeus, 1758) in the western Atlantic and eastern Pacific Oceans. The Generalized Linear Model (GLM) and the Maximum Entropy (Maxent) model were applied using the Software for Assisted Habitat Modeling. We compared models developed using native occurrences, using non-native occurrences, and using both native and non-native occurrences. Models were trained using occurrence data collected before 2010 and evaluated with occurrence data collected from the invaded range during or after 2010. We considered a total of 22 marine environmental variables. Models built with non-native only or both native and non-native occurrence data outperformed those that used only native occurrences. Evaluation metrics based on the independent test data were highest for models that used both native and non-native occurrences. Bathymetry was the strongest environmental predictor for all models and showed increasing suitability as ocean floor depth decreased, with salinity ranking the second strongest predictor for models that used native and both native and non-native occurrences, indicating low habitat suitability for salinities <30. Our model results also suggest that red lionfish could continue to invade southern latitudes in the western Atlantic Ocean and may establish localized populations in the eastern Pacific Ocean. We reiterate the importance in the choice of the training data source (native, non-native, or native/non-native) used to develop correlative species distribution models for invasive species.

Aquatic Invasions

Comparison of storm runoff models for a small watershed in an urban metropolitan area, Albuquerque, New Mexico

In order to comply with a current U.S. Environmental Protection Agency watershed-based National Pollutant Discharge Elimination System permit, the City of Albuquerque required a better understanding of the rainfall-runoff processes in its small urban watersheds. That requirement prompted the initiation of the assessment of three existing watershed models that were developed to simulate those processes. Three existing rainfall-runoff modeling software packages—Hydrologic Engineering Center Hydrologic Modeling System (HEC-HMS) (using two sets of methods), Program for Predicting Polluting Particle Passage Through Pits, Puddles, and Ponds (P8), and Arid-Lands Hydrologic Model (AHYMO)—were compared to determine which provided the best balance of accuracy and usability for simulating storm runoff in small watersheds in the urbanized area of Albuquerque, New Mexico. Additionally, results of this study could help inform model users who have interest in simulating storm runoff in similar urban areas throughout the United States. Each model was used to simulate storm runoff in the Hahn Arroyo watershed, an urbanized watershed with concrete-lined arroyo channels in the northeastern quadrant of Albuquerque that exhibits flashy, monsoonal-driven storm runoff. Model results were compared to observed discharge data, according to literature-recommended performance measures and performance evaluation criteria. The HEC-HMS model using the Soil Conservation Service (SCS) curve number (CN) and SCS unit hydrograph methods ranked the highest when averaging the individual performance measures (Nash-Sutcliffe Efficiency, percent bias, and coefficient of determination) rankings together across the hourly calibration and validation periods, followed by P8, which was tied with the HEC-HMS initial and constant approach. For daily rankings using the same rank-averaging approach, the HEC-HMS CN-based model and P8 were tied for the highest ranking, followed by the HEC-HMS initial and constant approach. Alternatively, rating performance using validation period results as an indication of the expected confidence in forecasted results for future conditions, the P8 model performed best for both hourly and daily time-steps, followed by the HEC-HMS CN-based model and the HEC-HMS initial and constant-based model. However, based on the literature performance evaluation criteria, the HEC-HMS and P8 models overall had marginally satisfactory performance only for operation at the daily time-step. Direct comparison of the HEC-HMS and P8 models to the AHYMO is difficult, given the different performance assessment criteria used to assess these models separately in this study, as recommended by the literature. The AHYMO results generally lacked precision, given the wide range in the performance assessment values across events in percent error in peak discharge, difference in timing of peak discharge, percent error in total runoff volume, and difference in duration of event relative to observed data. For some events, however, the AHYMO results were fairly accurate, and AHYMO was likely a good predictor of the timing of storm runoff and the shape of the hydrograph. This study did not assess the results for all potential applications of the models in the Albuquerque urbanized area. Further study may be required to assess the model performance capabilities in other modeling applications.

New Mexico

Development of the North Carolina stormwater-treatment decision-support system by using the Stochastic Empirical Loading and Dilution Model (SELDM)

The Federal Highway Administration and State departments of transportation nationwide need an efficient method to assess potential adverse effects of highway stormwater runoff on receiving waters to optimize stormwater-treatment decisions. To this end, the U.S. Geological Survey, in cooperation with the Federal Highway Administration and the North Carolina Department of Transportation (NCDOT), developed a decision-support software tool based on a statewide version of the Stochastic Empirical Loading and Dilution Model (SELDM). This decision-support tool is designed to identify potential adverse effects of highway runoff by using a criterion based on a measurable change in water quality from a surrogate pollutant. The NCDOT worked with the North Carolina Department of Environmental Quality to select a 25-percent change in suspended sediment concentration as the decision-rule criterion for identifying measurable downstream water-quality change; this selection was based on available data and widely accepted stormwater monitoring uncertainties. Development of the statewide tool and its application to the Piedmont ecoregion are described in this report. Because SELDM can be applied to build a similar decision-support tool in any State, this report describes practice-ready methods that other State departments of transportation and municipal permittees can use to streamline environmental permitting and project delivery while protecting the environment. Hydraulic design engineers can use this decision-support tool to establish stormwater-treatment goals for highway construction or improvement projects without having to learn SELDM or interpret its statistical output. The tool is a spreadsheet that determines if a selected highway segment can directly discharge highway runoff, if the highway segment can discharge runoff following treatment using a basic vegetated conveyance best management practice (BMP), or if treatment using an advanced BMP is needed to minimize effects of discharges on downstream water quality. To use the tool, hydraulic design engineers obtain upstream-basin characteristics from the U.S. Geological Survey StreamStats application and highway-site characteristics from preliminary design plans. They then enter these characteristics in the decision-support tool, which identifies the necessary stormwater-treatment goal. The Piedmont ecoregion was used as a case study to demonstrate the type of information the decision-support tool can provide. In this ecoregion, 100 percent of direct discharges meet the water-quality criterion when the drainage-area ratio is less than about 0.007 acres of highway per square mile of upstream basin. Advanced BMPs are needed in 100 percent of basins with drainage-area ratios greater than about 50 acres per square mile. Between these drainage-area ratios, the selection of direct discharge, a basic vegetated conveyance BMP, or an advanced BMP is a function of highway-site and upstream-basin properties.

North Carolina

Application of the Hydroecological Integrity Assessment Process for Missouri Streams

Natural flow regime concepts and theories have established the justification for maintaining or restoring the range of natural hydrologic variability so that physiochemical processes, native biodiversity, and the evolutionary potential of aquatic and riparian assemblages can be sustained. A synthesis of recent research advances in hydroecology, coupled with stream classification using hydroecologically relevant indices, has produced the Hydroecological Integrity Assessment Process (HIP). HIP consists of (1) a regional classification of streams into hydrologic stream types based on flow data from long-term gaging-station records for relatively unmodified streams, (2) an identification of stream-type specific indices that address 11 subcomponents of the flow regime, (3) an ability to establish environmental flow standards, (4) an evaluation of hydrologic alteration, and (5) a capacity to conduct alternative analyses. The process starts with the identification of a hydrologic baseline (reference condition) for selected locations, uses flow data from a stream-gage network, and proceeds to classify streams into hydrologic stream types. Concurrently, the analysis identifies a set of non-redundant and ecologically relevant hydrologic indices for 11 subcomponents of flow for each stream type. Furthermore, regional hydrologic models for synthesizing flow conditions across a region and the development of flow-ecology response relations for each stream type can be added to further enhance the process. The application of HIP to Missouri streams identified five stream types ((1) intermittent, (2) perennial runoff-flashy, (3) perennial runoff-moderate baseflow, (4) perennial groundwater-stable, and (5) perennial groundwater-super stable). Two Missouri-specific computer software programs were developed: (1) a Missouri Hydrologic Assessment Tool (MOHAT) which is used to establish a hydrologic baseline, provide options for setting environmental flow standards, and compare past and proposed hydrologic alterations; and (2) a Missouri Stream Classification Tool (MOSCT) designed for placing previously unclassified streams into one of the five pre-defined stream types.

Open-File Report

Description and testing of the Geo Data Portal: Data integration framework and Web processing services for environmental science collaboration

Interest in sharing interdisciplinary environmental modeling results and related data is increasing among scientists. The U.S. Geological Survey Geo Data Portal project enables data sharing by assembling open-standard Web services into an integrated data retrieval and analysis Web application design methodology that streamlines time-consuming and resource-intensive data management tasks. Data-serving Web services allow Web-based processing services to access Internet-available data sources. The Web processing services developed for the project create commonly needed derivatives of data in numerous formats. Coordinate reference system manipulation and spatial statistics calculation components implemented for the Web processing services were confirmed using ArcGIS 9.3.1, a geographic information science software package. Outcomes of the Geo Data Portal project support the rapid development of user interfaces for accessing and manipulating environmental data.

Open-File Report

User's manual for the upper Delaware River riverine environmental flow decision support system (REFDSS), Version 1.1.2

Between 2002 and 2006, the Fort Collins Science Center (FORT) at the U.S. Geological Survey (USGS) conducted field surveys, organized workshops, and performed analysis of habitat for trout and shad in the Upper Delaware River Basin. This work culminated in the development of decision support system software (the Delaware River DSS–DRDSS, Bovee and others, 2007) that works in conjunction with the Delaware River Basin Commission’s reservoir operations model, OASIS, to facilitate comparison of the habitat and water-delivery effects of alternative operating scenarios for the Basin. This original DRDSS application was developed in Microsoft Excel and is available to all interested parties through the FORT web site ( http://www.fort.usgs.gov/Products/Software/DRDSS/ ). Initial user feedback on the original Excel-based DSS highlighted the need for a more user-friendly and powerful interface to effectively deliver the complex data and analyses encapsulated in the DSS. In order to meet this need, the USGS FORT and Northern Appalachian Research Branch (NARB) developed an entirely new graphical user interface (GUI) application. Support for this research was through the DOI WaterSmart program ( http://www.doi.gov/watersmart/html/index.php ) of which the USGS component is the National Water Census ( http://water.usgs.gov/watercensus/WaterSMART.html ). The content and methodology of the new GUI interface emulates those of the original DSS with a few exceptions listed below. Refer to Bovee and others (2007) for the original information. Significant alterations to the original DSS include: • We moved from Excel-based data storage and processing to a more powerful database back end powered by SQLite. The most notable effect of this is that the previous maximum temporal extent of 10 years has been replaced by a dynamic extent that can now cover the entire period of record for which we have data (1928–2000). • We incorporated interactive geographic information system (GIS) visualization and dynamic data processing. Previous habitat maps were generated outside of the DSS in an ad hoc process that the end user could not update or investigate. • The original bathymetric data collected in 2005 at the three main stem reaches was augmented with a higher resolution dataset collected in 2010. This new dataset was collected in order to conduct higher resolution (finer pixel size) two-dimensional (2D) hydrodynamic modeling for evaluating dwarf wedgemussel (DWM, Alasmidonta heterodon ) habitat. • Results charts are now substantially more interactive, dynamic, and accessible, which allows users to more easily focus on their particular topics of interest as well as drill down to the source data used to calculate given results.

Open-File Report

A range-wide model of contemporary, omnidirectional connectivity for the threatened Mojave desert tortoise

As habitat destruction leads to species extinctions globally, conservation planning that accounts for population-level connectivity and gene flow is an urgent priority. Models that only approximate habitat potential are incomplete because areas of high habitat potential may be isolated, whereas intermixed areas of lower habitat potential may still be critical for maintaining connectivity between and among populations. We developed a range-wide, omnidirectional (‘coreless’) connectivity model and map for the threatened Mojave desert tortoise at a high spatial resolution (30 m), based on empirical movement data and a circuit-theoretic approach to estimating connectivity. Specifically, we first estimated habitat potential (i.e., quality) for tortoise movement (as distinct from habitat potential more generally) across its range using hypotheses based on the published literature, linear mixed models, multiple environmental factors derived from remotely sensed data, and recent solar and wind development footprints. The resultant raster output was used to represent landscape conductance in a circuit-theoretic model of connectivity, which relates the flow of electrical current through a circuit to the movement of tortoises through the landscape. We then modeled potential connectivity across the range of the tortoise using Circuitscape software and the Julia numerical programming language. Intermediate distances from minor roads, intermediate values of annual average maximum temperature, and increasing density of desert washes were among the strongest predictors of movement habitat quality. There was also strong evidence for increased habitat quality for movement with increasing amounts of vegetation cover. The resulting connectivity model and map was determined to accurately reflect important areas for tortoise movement, but we encourage others to do their own evaluation of the model within local areas of interest and as more data become available. Accordingly, the map can provide an important component to improve management decisions that have the potential to influence the conservation of connected desert tortoise populations throughout the range.

California

Self-guided decision support groundwater modelling with Python

The GMDSI tutorial notebooks repository provides learners with a comprehensive set of tutorials for self-guided training on decision-support groundwater modelling using Python-based tools. Although targeted at groundwater modelling, they are based around model-agnostic tools and readily transferable to other environmental modelling workflows. The tutorials are divided into three parts. The first covers fundamental theoretical concepts. These are intended as background reading for reference on an as-needed basis. Tutorials in the second part introduce learners to some of the core concepts parameter estimation in a groundwater modelling context, as well as providing a gentle introduction to the PEST, PEST++ and pyEMU software. Lastly, the third part demonstrates how to implement highly-parameterized applied decision-support modelling workflows. The tutorials aim to provide examples of both “how to use” the software as well as “how to think” about using the software. A key advantage to using notebooks in this context is that the workflows described run the same code as practitioners would run on a large-scale real- world application. Using a small synthetic model facilitates rapid progression through the workflow.

Journal of Open Source Education

Using a mechanistic model to develop management strategies to cool Apache Trout streams under the threat of climate change

User‐friendly stream temperature models populated with on‐site data may help in developing strategies to manage temperatures of individual stream reaches that are subject to climate change. We used the field‐tested Stream Segment Temperature model (U.S. Geological Survey) to simulate how altering discharge, groundwater input, channel wetted width, and shade prevents the temperatures of White Mountain, Arizona, stream reaches from exceeding the thermal tolerance of Apache Trout Oncorhynchus apache , both under existing conditions and under a climate change scenario. Simulations suggested increasing shade, either through streamside planting of specific numbers and species of plants or by other means, would be most effective and feasible for cooling the stream reaches we studied. Ponderosa pine Pinus ponderosa and Douglas fir Pseudotsuga menziesii provided the most shade followed in order by Engelman spruce Picea engelmannii , Bebb's willow Salix bebbiana , Arizona alder Alnus oblongifolia , and finally coyote willow Salix exigua . Vegetation survival depends on the appropriateness of site conditions at present and under climate change, and planting in buffer strips minimizes additional water removal from the watershed through evapotranspiration. Alternative shading options, including thick sedge growth, shade cloth, or felled woody vegetation, may be considered when environmental conditions do not support plantings. Increasing groundwater input can cool streams, but additional sources are scarce in the region. Decreasing the width‐to‐depth ratio would succeed best on reaches with widths greater than 2.0 m. Increasing discharge from upstream may lower water temperature on reaches with an initial discharge greater than 0.5 m 3 /s. Existing models provide suggestions to cool stream reaches. Further development of accessible software packages that incorporate evaporation, fragmentation, and other projected climate change effects into their routines will provide additional tools to help manage climate change effects.

Arizona

Evaluating simplistic methods to understand current distributions and forecast distribution changes under climate change scenarios: An example with coypu ( Myocastor coypus )

Invasive species provide a unique opportunity to evaluate factors controlling biogeographic distributions; we can consider introduction success as an experiment testing suitability of environmental conditions. Predicting potential distributions of spreading species is not easy, and forecasting potential distributions with changing climate is even more difficult. Using the globally invasive coypu ( Myocastor coypus [Molina, 1782]), we evaluate and compare the utility of a simplistic ecophysiological based model and a correlative model to predict current and future distribution. The ecophysiological model was based on winter temperature relationships with nutria survival. We developed correlative statistical models using the Software for Assisted Habitat Modeling and biologically relevant climate data with a global extent. We applied the ecophysiological based model to several global circulation model ( GCM ) predictions for mid-century. We used global coypu introduction data to evaluate these models and to explore a hypothesized physiological limitation, finding general agreement with known coypu distribution locally and globally and support for an upper thermal tolerance threshold. Global circulation model based model results showed variability in coypu predicted distribution among GCMs , but had general agreement of increasing suitable area in the USA. Our methods highlighted the dynamic nature of the edges of the coypu distribution due to climate non-equilibrium, and uncertainty associated with forecasting future distributions. Areas deemed suitable habitat, especially those on the edge of the current known range, could be used for early detection of the spread of coypu populations for management purposes. Combining approaches can be beneficial to predicting potential distributions of invasive species now and in the future and in exploring hypotheses of factors controlling distributions.

NeoBiota

Phylogenetic conservatism in plant phenology

Phenological events – defined points in the life cycle of a plant or animal – have been regarded as highly plastic traits, reflecting flexible responses to various environmental cues. The ability of a species to track, via shifts in phenological events, the abiotic environment through time might dictate its vulnerability to future climate change. Understanding the predictors and drivers of phenological change is therefore critical. Here, we evaluated evidence for phylogenetic conservatism – the tendency for closely related spe-cies to share similar ecological and biological attributes – in phenological traits across flowering plants. We aggregated published and unpublished data on timing of first flower and first leaf, encompassing ~4000 species at 23 sites across the Northern Hemisphere. We reconstructed the phylogeny for the setof included species, first, using the software program Phylomatic, and second, from DNA data. We then quantified phylogenetic conservatism in plant phenology within and across sites. We show that more closely related species tend to flower and leaf at similar times. By contrastingmean flowering times within and across sites, however, we illustrate that it is not the time of yearthat is conserved, but rather the phenological responses to a common set of abiotic cues. Our findings suggest that species cannot be treated as statistically independent when modelling phenological responses. Synthesis. Closely related species tend to resemble each other in the timing of their life-history events, a likely product of evolutionarily conser ved responses to environmental cues. The search for the underlying drivers of phenology must therefore account for species’ shared evolutionary histories.

Journal of Ecology

Land-cover mapping of Red Rock Canyon National Conservation Area and Coyote Springs, Piute-Eldorado Valley, and Mormon Mesa Areas of Critical Environmental Concern, Clark County, Nevada

DigitalGlobe’s QuickBird satellite high-resolution multispectral imagery was classified by using Visual Learning Systems’ Feature Analyst feature extraction software to produce land-cover data sets for the Red Rock Canyon National Conservation Area and the Coyote Springs, Piute-Eldorado Valley, and Mormon Mesa Areas of Critical Environmental Concern in Clark County, Nevada. Over 1,000 vegetation field samples were collected at the stand level. The field samples were classified to the National Vegetation Classification Standard, Version 2 hierarchy at the alliance level and above. Feature extraction models were developed for vegetation on the basis of the spectral and spatial characteristics of selected field samples by using the Feature Analyst hierarchical learning process. Individual model results were merged to create one data set for the Red Rock Canyon National Conservation Area and one for each of the Areas of Critical Environmental Concern. Field sample points and photographs were used to validate and update the data set after model results were merged. Non-vegetation data layers, such as roads and disturbed areas, were delineated from the imagery and added to the final data sets. The resulting land-cover data sets are significantly more detailed than previously were available, both in resolution and in vegetation classes.

Nevada

A modeling workflow that balances automation and human intervention to inform invasive plant management decisions at multiple spatial scales

Predictions of habitat suitability for invasive plant species can guide risk assessments at regional and national scales and inform early detection and rapid-response strategies at local scales. We present a general approach to invasive species modeling and mapping that meets objectives at multiple scales. Our methodology is designed to balance trade-offs between developing highly customized models for few species versus fitting non-specific and generic models for numerous species. We developed a national library of environmental variables known to physiologically limit plant distributions and relied on human input based on natural history knowledge to further narrow the variable set for each species before developing habitat suitability models. To ensure efficiency, we used largely automated modeling approaches and human input only at key junctures. We explore and present uncertainty by using two alternative sources of background samples, including five statistical algorithms, and constructing model ensembles. We demonstrate the use and efficiency of the Software for Assisted Habitat Modeling [SAHM 2.1.2], a package in VisTrails, which performs the majority of the modeling analyses. Our workflow includes solicitation of expert feedback on model outputs such as spatial prediction results and variable response curves, and iterative improvement based on new data availability and directed field validation of initial model results. We highlight the utility of the models for decision-making at regional and local scales with case studies of two plant species that invade natural areas: fountain grass ( Pennisetum setaceum ) and goutweed ( Aegopodium podagraria ). By balancing model automation with human intervention, we can efficiently provide land managers with mapped predicted distributions for multiple invasive species to inform decisions across spatial scales.

PLoS ONE

Bedrock and structural geologic maps of eastern Candor Sulci, western Ceti Mensa, and southeastern Ceti Mensa, Candor Chasma, Valles Marineris region of Mars

This map product contains a set of three 1:18,000-scale maps showing the geology and structure of study areas in the western Candor Chasma region of Valles Marineris, Mars. These maps are part of an informal series of large-scale maps and map-based topical studies aimed at refining current understanding of the geologic history of western Candor Chasma. The map bases consist of digital elevation models and orthorectified images derived from High Resolution Imaging Science Experiment (HiRISE) data. These maps are accompanied by geologic cross sections, colorized elevation maps, and cutouts of HiRISE images showing key superposition relations. Also included in this product is a Correlation of Map Units that integrates units across all three map areas, as well as an integrated Description of Map Units and an integrated Explanation of Map Symbols. The maps were assembled using ArcGIS software produced by Environmental Systems Research Institute (http://www.esri.com). The ArcGIS projects and databases associated with each map are included online as supplemental data.

Scientific Investigations Map

Wetland modeling and information needs at Stillwater National Wildlife Refuge

The marshes in and around Stillwater National Wildlife Refuge (the Refuge) are extremely dynamic; expanding and contracting in size both seasonally, due to runoff and subsequent evapotranspiration, and over longer periods, due to climatic variation. The dynamic nature of these marshes results in a diversity of wetland habitats, which support a variety of migratory birds. To maintain this wetland diversity and control the loss of migratory bird habitat in the Lahontan Valley, the Refuge was established and currently manages a complex of marsh units. However, changes in the hydrology, and changes that will occur as a result of the Fallon Paiute-Shoshone and Truckee-Carson-Pyramid Lake Water Rights Settlement Act (Public Law 101-618, 104 Stat. 3389), greatly affect the Refuge's wetland management capability. In light of these changes, and the legal requirements associated with environmental impact assessments, the Refuge convened a workshop to discuss several aspects of wetland management in the Lahontan Valley. The workshop, described in this report, had three primary objectives: 1. discuss the types and relative proportions of primary wetland habitats that should be provided as described in the settlement act; 2. discuss wetland management models that might be developed to help manage these marshes under hydrologic regimes likely in the future; and 3. discuss future information and monitoring needs, including proposals for valley-wide biodiversity surveys, which would be helpful when considering withdrawn Bureau of Reclamation (BR) lands for possible incorporation into the Refuge. Several presentations at the beginning of the workshop provided a common basis for discussing these objectives. Refuge staff provided background on the history and past management. The Nature Conservatory discussed their role in the settlement act, proposals for valley-wide biodiversity surveys, and results of a literature review for Stillwater Marsh and the Lahontan Valley (Nachlinger 1993). Kay Fowler provided an historical context of changes in vegetation and waterbird use of the marshes based on her ethnography of the local Paiute Indians (Fowler 1993). Finally, Bob Elston discussed a model that predicts archaeological sites based on environmental variables (Raven and Elston 1989). The workshop was organized by staff from the Refuge and facilitated by the authors of this report. Participants included Ron Anglin, Bill Henry, Anne Janik, Cliff Creger, Fred Paveglio, and Mary Jo Elpers of the U.S. Fish and Wildlife Service (the Service); Jeff Baumgartner, Jan Nachlinger, Hope Humphries, and Graham Chisholm of The Nature Conservancy; David Yardas of the Environmental Defense Fund; David Robertson of Robertson Software, Inc.; Norm Saake, Terry Retterer, and Larry Neel of the Nevada Department of Wildlife; Lew Oring and Kay Fowler of the University of Nevada; and Robert Elston of Intermountain Research.

Report

Spatially explicit modeling to evaluate regional stream water quality

Spatially referenced regressions on watershed attributes (SPARROW) models have been developed and applied over the past two decades to address the need for large-scale, spatially explicit information on stream water quality conditions. The strength of SPARROW models is that they describe the primary environmental processes that affect the supply and transport of contaminant mass in watersheds, based on the use of stream monitoring and geospatial data to statistically estimate model parameters. SPARROW models were first applied at the scale of the conterminous US, but their use has grown through applications in many smaller regions of the US and in other countries. Recent developments include a web-based decision support system that provides open access to model results without the assistance of technical experts or special software. As it is highlighted in this chapter, SPARROW modeling provides a flexible framework for studying many aspects of water quality to support both research and resource management objectives.

Book chapter

VS2DRTI: Simulating heat and reactive solute transport in variably saturated porous media

Variably saturated groundwater flow, heat transport, and solute transport are important processes in environmental phenomena, such as the natural evolution of water chemistry of aquifers and streams, the storage of radioactive waste in a geologic repository, the contamination of water resources from acid-rock drainage, and the geologic sequestration of carbon dioxide. Up to now, our ability to simulate these processes simultaneously with fully coupled reactive transport models has been limited to complex and often difficult-to-use models. To address the need for a simple and easy-to-use model, the VS2DRTI software package has been developed for simulating water flow, heat transport, and reactive solute transport through variably saturated porous media. The underlying numerical model, VS2DRT, was created by coupling the flow and transport capabilities of the VS2DT and VS2DH models with the equilibrium and kinetic reaction capabilities of PhreeqcRM. Flow capabilities include two-dimensional, constant-density, variably saturated flow; transport capabilities include both heat and multicomponent solute transport; and the reaction capabilities are a complete implementation of geochemical reactions of PHREEQC. The graphical user interface includes a preprocessor for building simulations and a postprocessor for visual display of simulation results. To demonstrate the simulation of multiple processes, the model is applied to a hypothetical example of injection of heated waste water to an aquifer with temperature-dependent cation exchange. VS2DRTI is freely available public domain software.

Groundwater