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At least 163 records · Page 9Linked to original sources
USGS2011

Spatial patch occupancy patterns of the Lower Keys marsh rabbit

Reliable estimates of presence or absence of a species can provide substantial information on management questions related to distribution and habitat use but should incorporate the probability of detection to reduce bias. We surveyed for the endangered Lower Keys marsh rabbit ( Sylvilagus palustris hefneri ) in habitat patches on 5 Florida Key islands, USA, to estimate occupancy and detection probabilities. We derived detection probabilities using spatial replication of plots and evaluated hypotheses that patch location (coastal or interior) and patch size influence occupancy and detection. Results demonstrate that detection probability, given rabbits were present, was <0.5 and suggest that naïve estimates (i.e., estimates without consideration of imperfect detection) of patch occupancy are negatively biased. We found that patch size and location influenced probability of occupancy but not detection. Our findings will be used by Refuge managers to evaluate population trends of Lower Keys marsh rabbits from historical data and to guide management decisions for species recovery. The sampling and analytical methods we used may be useful for researchers and managers of other endangered lagomorphs and cryptic or fossorial animals occupying diverse habitats.

Florida↗
USGS2019

Noninvasive identification of cryptic herpetofauna from fecal samples: A novel approach pairing conservation dog surveys and genetic analysis

Noninvasive fecal sampling combined with genetic analysis is a powerful technique allowing the study of elusive or otherwise difficult to monitor species without the need for direct contact. While this method is widely used in birds and mammals, it has never been successfully applied on a large scale in reptiles. The blunt-nosed leopard lizard (Gambelia sila) is an endangered species endemic to the San Joaquin Desert of California. Presently, acquiring data on G. sila for research and management involves more traditional methods such as live capture to obtain tissue samples for DNA analysis, or observation via visual surveys, which are also used for regulatory monitoring in accordance with wildlife agency protocols. Here we describe an innovative approach for gathering additional information, that combines use of conservation detection dogs trained to locate G. sila scat samples with genetic analysis for identifying and distinguishing among sympatric lizard species. We developed two PCR assays that produce fluorescently labelled amplicons of species-specific fragment length for six lizard species in the study area. Using these assays we genetically identifed to species 78% (255 of 327) of samples collected by dog-handler teams across four years. The majority of the genetically identifed samples (82.4%; 210 of 255) were confirmed as originating from G. sila. Beyond the immediate application of these techniques for the study and monitoring of G. sila, our ability to recover usable DNA and to differentiate among a diverse group of lizards highlights the broad potential of our methodology for noninvasive sampling in reptiles.

California↗
USGS2009

Understanding the Habitat Needs of the Declining Western Yellow-Billed Cuckoo

The western yellow-billed cuckoo, once common along the streams and rivers of the American West, is now a candidate for protection under the Endangered Species Act. Most of the remaining breeding pairs are found in Arizona, California, and New Mexico. Research to understand the cuckoos' habitat needs by U.S. Geological Survey (USGS) and Northern Arizona University scientists has shown that cuckoos in Arizona prefer breeding habitat dominated by native tree species, especially cottonwood-willow habitat bordered by mesquite bosque habitat. This research also revealed that the size of habitat patches matters - breeding cuckoos were found only in large, continuous areas of riparian habitat. These findings and the development of spatially explicit habitat models by USGS scientists will help resource managers conserve and manage riparian habitats needed to ensure the survival of the western yellow-billed cuckoo.

Fact Sheet↗
USGS2020

A demographic projection model to support conservation decision making for an endangered snake with limited monitoring data

Conservation planning for rare and threatened species is often made more difficult by a lack of research and monitoring data. In such cases, managers may rely on qualitative assessments of species risk that lack explicit acknowledgement of uncertainty. Snakes are a group of conservation concern that are also notoriously difficult to monitor. Here, we demonstrate a quantitative population projection for a data-deficient species, the Puerto Rican boa ( Chilabothrus inornatus ) using expert knowledge and published information about species life history and threats to persistence. Using this model, we simulated population dynamics over 30 years under four scenarios of future urbanization and found that there was an increased probability of population decline as urbanization rates increased. We conduct a sensitivity analysis to evaluate the sensitivity of outcomes to model inputs, a practice that may also be useful in recovery planning. The sensitivity analyses also provide insight into how the future trajectories would change if the elicited demographic rates are incorrect. Even when data are sparse, quantitative methods can often be used to produce rigorous and reproducible estimates of future status with quantifiable uncertainty.

Puerto Rico↗
USGS2004

Landsat TM inventory and assessment of waterbird habitat in the southern altiplano of South America

The diverse set of wetlands in southern altiplano of South America supports a number of endemic and migratory waterbirds. These species include endangered endemic flamingos and shorebirds that nest in North America and winter in the altiplano . This research developed maps from nine Landsat Thematic Mapper (TM) images (254,300 km 2 ) to provide an inventory of aquatic waterbird habitats. Image processing software was used to produce a map with a classification of wetlands according to the habitat requirements of different types of waterbirds. A hierarchical procedure was used to, first, isolate the bodies of water within the TM image; second, execute an unsupervised classification on the subsetted image to produce 300 signatures of cover types, which were further subdivided as necessary. Third, each of the classifications was examined in the light of field data and personal experience for relevance to the determination of the various habitat types. Finally, the signatures were applied to the entire image and other adjacent images to yield a map depicting the location of the various waterbird habitats in the southern altiplano . The data sets referenced with a global positioning system receiver were used to test the classification system. Multivariate analysis of the bird communities censused at each lake by individual habitats indicated a salinity gradient, and then the depth of the water separated the birds. Multivariate analysis of the chemical and physical data from the lakes showed that the variation in lakes were significantly associated with difference in depth, transparency, latitude, elevation, and pH. The presence of gravel bottoms was also one of the qualities distinguishing a group of lakes. This information will be directly useful to the Flamingo Census Project and serve as an element for risk assessment for future development.

Wetlands Ecology and Management↗
USGS2015

Caveats for correlative species distribution modeling

Correlative species distribution models are becoming commonplace in the scientific literature and public outreach products, displaying locations, abundance, or suitable environmental conditions for harmful invasive species, threatened and endangered species, or species of special concern. Accurate species distribution models are useful for efficient and adaptive management and conservation, research, and ecological forecasting. Yet, these models are often presented without fully examining or explaining the caveats for their proper use and interpretation and are often implemented without understanding the limitations and assumptions of the model being used. We describe common pitfalls, assumptions, and caveats of correlative species distribution models to help novice users and end users better interpret these models. Four primary caveats corresponding to different phases of the modeling process, each with supporting documentation and examples, include: (1) all sampling data are incomplete and potentially biased; (2) predictor variables must capture distribution constraints; (3) no single model works best for all species, in all areas, at all spatial scales, and over time; and (4) the results of species distribution models should be treated like a hypothesis to be tested and validated with additional sampling and modeling in an iterative process.

Ecological Informatics↗
USGS2003

Internal cave gating for protection of colonies of the endangered gray bat (Myotis grisescens)

Persistent human disturbance is a major cause for the decline in populations of many cave-dwelling bats and other sensitive cave-obligate organisms. Cave gating has been used to eliminate human disturbance, but few studies have assessed directly the impact of such management activities on resident bats. In northeastern Oklahoma, USA, 25 entrances of caves inhabited by two endangered species and one endangered subspecies of bats are protected from human entry with internal gates. Because cave gates may impede ingress and egress of bats at caves, we evaluated the impacts of internal gates before and after their construction at six colonies of endangered gray bats ( Myotis grisescens ) from 1981 to 2001. No caves were abandoned by gray bats after the construction of internal gates; in fact, total numbers of gray bats using the six caves increased from 60,130 in 1981 to 70,640 in 2001. Two caves harbored more gray bats after gating, and three caves had no change in gray bat numbers after gating. We also compared initiations of emergences at three gated and three open-passage caves in June and July 1999–2000. No differences in timing of initiation of emergence were found between colonies in gated versus open-passage caves. Our results support the use of internal gates to protect and thereby enhance recovery of colonies of endangered gray bats. Additional research is encouraged to confirm that our observations on gray bats are generally applicable to other species of cave-dwelling bats.

Oklahoma↗
USGS2006

Palila Restoration: Lessons from Long-term Research

BACKGROUND The palila (Loxioides bailleui) is a member of the Hawaiian honeycreeper family of birds (Drepanidinae), which is renowned for the profusion of species - many with bizarre bills and specialized feeding habits - that radiated from a single ancestral type. Most of the 57 or so honeycreeper species are extinct, and the palila is endangered because of its high degree of dependence on the mamane tree (Sophora chrysophylla) (Figure 1) and its restricted distribution on the upper slopes of Mauna Kea (Figure 2). Three decades of research have revealed many important facts about palila, providing the foundation and impetus for conservation programs in the wild and captivity. Additionally, an ambitious public conservation campaign arose due to the land-use conflicts on Mauna Kea. Here we summarize progress in palila conservation biology and outline steps that might overcome the remaining major challenges to its recovery. We also highlight lessons learned from palila research that may help the recovery of other Hawaiian forest birds. Palila and two closely-related species on the tiny islands of Nihoa and Laysan are the last of the seed-eating honeycreeper species in the Hawaiian Islands. About a quarter of the honeycreeper species known from living and fossil specimens had finch-like bills suited mainly for eating seeds and fruits. Because of their dietary specialization, palila are vulnerable to changes in forest size and quality, as was also likely the case for extinct species of seed specialists. Palila and many other forest bird species were once distributed in dry, lowland forests. Fossil records indicate that palila also occurred in the lowlands of O`ahu and Kaua`i until human settlement of those islands. However, because lowland habitats have been highly modified by humans and because mamane occurs today primarily at high elevation, palila are the only native bird species found exclusively in dry, subalpine habitat (2000?2850 m). Similar to other feeding specialists, palila lay few eggs, raise few young each year, and take a relatively long time to complete the nesting cycle. Low rates of reproduction result in low rates of population growth and low potential for recovery from disturbances. Long-term studies of palila offer important insights into the conservation biology of all Hawaiian forest bird species, particularly feeding specialists like the palila. Palila face many challenges common to both generalist and specialist Hawaiian honeycreeper species. Habitat loss and degradation, as well as introduced avian diseases, have reduced their numbers and limited their distribution to a very small portion of their historic range. Introduced mammals prey on palila, while alien insects reduce caterpillars that are particularly important in the diet of nestlings. Securing legal protection and funding for palila restoration has been challenging. Understanding how the palila has avoided extinction can help managers plan its recovery, and better design recovery plans for species with different feeding strategies in other habitats.

Fact Sheet↗
USGS2024

Modeling the impacts of Glen Canyon Dam operations on Colorado River resources

At the time of this report, the Bureau of Reclamation (Reclamation) is writing two supplemental Environmental Impact Statements (sEIS ) and a new Environmental Impact Statement (EIS) that will analyze the effects of changing water flow out of Glen Canyon Dam (GCD) (U.S. Department of Interior, 2024). These actions have the potential to affect downstream resources, including threatened and endangered species, in the Grand Canyon. This report covers modeling support provided on the two sEIS by the USGS Grand Canyon Monitoring and Research Center (GCMRC; U.S. Geological Survey, Southwest Biological Science Center). The first sEIS (Interim Guidelines sEIS) modifies Reclamation’s 2007 Colorado River Interim Guidelines for Lower Basin Shortages and Coordinated Operations for Lake Powell and Lake Mead (USBR, 2007) that determines annual water releases from GCD based on inflow to Lake Powell, the power generating requirements of GCD, and relative lake levels of Lake Powell and Lake Mead. Drought conditions have lowered the level of Lake Powell and may require GCD to release less water than was analyzed in the Interim EIS (7-million-acre feet/year). The effect of less water released, as well as lower lake levels and associated water quality concerns, on downstream resources was not analyzed in the 2007 Interim Guidelines EIS. Reclamation requested GCMRC support to provide models predicting the effects to resources of water releases lower than 7M acre feet/year, including models predicting effects to threatened and endangered species for use in a Biological Assessment.

Report↗
USGS1995

Native ranid frogs in California

Many recent declines and extinctions of native amphibians have occurred in certain parts of the world (Wake 1991; Wake and Morowitz 1991). All species of native true frogs have declined in the western United States over the past decade (Hayes and Jennings 1986). Most of these native amphibian declines can be directly attributed to habitat loss or modification, which is often exacerbated by natural events such as droughts or floods (Wake 1991). A growing body of research, however, indicates that certain native frogs are particularly susceptible to population declines and extinctions in habitats that are relatively unmodified by humans (e.g., wilderness areas and national parks in California; Bradford 1991; Fellers and Drost 1993; Kagarise Sherman and Morton 1993). To understand these declines, we must document the current distribution of these species over their entire historical range to learn where they have disappeared. In 1988 the California Department of Fish and Game commissioned the California Academy of Sciences to conduct a 6-year study on the status of the state's amphibians and reptiles not currently protected by the Endangered Species Act. The study's purpose was to determine amphibians and reptiles most vulnerable to extinction and provide suggestions for future research, management, and protection by state, federal, and local agencies (Jennings and Hayes 1993). This article describes the distribution and status of all native true frogs in California as determined by the California Fish and Game study.

California↗
USGS2004

Engineering geologic conditions at the sinkhole entrance to Logan Cave, Benton County, Arkansas

Logan Cave, located in Benton County, Arkansas, is inhabited by several endangered and threatened species. The cave and surrounding area was designated a National Wildlife Refuge under the control of the U.S. Fish and Wildlife Service (USFWS) in 1989. Cave researchers access the cave through a steep-sided sinkhole entrance, which also is one of the two access points used by endangered bats. There is evidence of instability of one of the entrance slopes that has raised concerns that the entrance could close if slope failure was to occur. At the request of USFWS, we performed an engineering geologic investigation of the sinkhole to evaluate stability of this slope, which is comprised of soil, and other mechanisms of sediment transport into the cave entrance. The investigation included engineering geologic mapping, sampling and laboratory testing of subsurface geologic materials, and slope-stability analysis. We found that the sinkhole slope that extends into the entrance of the cave is comprised of sandy and gravelly soil to the depths explored (6.4 meters). This soil likely was deposited as alluvium within a previous, larger sinkhole. Based on properties of the alluvium, geometry of the slope, and results of finite-element slope-stability analyses, we conclude that the slope is marginally stable. Future failures of the slope probably would be relatively thin and small, thus several would be required to completely close the cave entrance. However, sediment is accumulating within the cave entrance due to foot traffic of those accessing the cave, surface-water erosion and transport, and shallow slope failures from the other sinkhole slopes. We conclude that the entrance will be closed by sediment in the future, similar to another entrance that we identified that completely closed in the past. Several measures could be taken to reduce the potential for closure of the cave entrance, including periodic sediment removal, installation of materials that reduce erosion by foot traffic and surface water, construction of a sediment-retention wall, and excavation of the soil slope. Any measures taken must be carefully planned and executed so that they have no impact on organisms within the cave.

Open-File Report↗
USGS1997

Mercury residues in south Florida apple snails (Pomacea paludosa)

Mercury concentrations in the sediments of south Florida wetlands have increased three fold in the last century (Rood et al. 1993). Because south Florida is home to many endemic and endangered species, it is important to understand the potential impacts of mercury in this ecosystem's food web. Recent research by Malley et al. (1996) has shown mollusks to be sensitive indicators of methyl mercury which can reflect small differences in background methyl mercury concentrations. In this study, we attempted to determine if the apple snail (Pomacea paludosa) or its eggs are good indicators of bioavailable mercury. Then, using the apple snail as an indicator, we attempted to determine geographic differences in the concentrations of mercury in south Florida.

Florida↗
USGS2000

Strategic science plan Salton Sea restoration project

The Salton Sea is an ecosystem in peril. Its prehistory consists of a series of intermittent lakes dependent on infrequent flooding of the Colorado River, while the modern Salton Sea originated from the desire to harness the flow of the Colorado River for irrigation. What began as an accident of this attempt is now a permanent inland sea supported by wastewater and agricultural drainage rather than Colorado River flood flows. However, environmental degradation is challenging the ability of the Sea to sustain the biological components that society has learned to value as characteristics of this waterbody. Increasing salinity and increasing frequency and magnitude of wildlife losses indicate the Sea is under severe environmental stress. The Salton Sea Restoration Project originated to reverse this degradation, to stabilize fluctuating water levels, and to provide a permanent waterbody that sustains values of the human society that uses it. The project foundation is provided by Public Law (PL) 102-575, passed by Congress in 1992. PL 102-575 directs the Secretary of the Interior to "conduct a research project for the development of a method or combination of methods to reduce and control salinity, provide endangered species habitat, enhance fisheries, and protect human recreational values . . . in the area of the Salton Sea." That PL was followed by the Salton Sea Reclamation Act of 1998 (PL 105-372), which directs the Secretary of the Interior to "complete all studies, including, but not limited to environmental and other reviews, of the feasibility and benefit-cost of various options that permit the continued use of the Salton Sea."

Report↗
USGS2008

Wildlife values of North American ricelands

Ricelands have become an indispensable component of waterbird habitat and a leading example of integrating agricultural and natural resource management in the Mississippi Alluvial Valley, Gulf Coast, and Central California. Residual rice, weed seeds, and invertebrates provide food for many avian species during fall and winter. In North America, considerable information exists on the use of ricefields by wintering waterbirds, the value of ricelands as breeding habitat for birds, and the effects of organic chemicals on birds that- feed in ricefields. Recent research has also examined the influence of field management practices, such as winter flooding and post-harvest straw manipulation, on the suitability of ricefields for wildlife. Whereas early studies focused on detrimental effects of wildlife on rice production (e.g., crop depredation), it has become apparent that waterbirds may benefit producers by enhancing straw decomposition, reducing weed and pest pressure, and providing additional income through hunting and wildlife viewing opportunities. A comprehensive evaluation of agronomic and environmental issues is needed to meet the challenges of producing food and sustaining wildlife in twenty-first-century rice lands. Changes in agricultural markets, pressures of increased urban development, conflicting needs for limited resources such as water, endangered species constraints, and concerns over water quality must be addressed in developing a sustainable, mutually beneficial partnership among the rice industry, wildlife, and environmental interests. Research is also needed to evaluate potential reductions in the wildlife carrying capacity of ricelands resulting from new harvest and field management techniques, crop conversion, or loss of rice acreage. Key uncertainties include: (1) changes in waste grain abundance and availability due to various harvest and post-harvest management practices; (2) evaluating food depletion by birds feeding in rice6elds and derermining threshold food levels required to maintain bird use; (3) quantifying use of ricefields by nonwaterfowl species throughout the year; and (4) determining the amount and distribution of rice habitat needed to meet objectives of the North American Waterfowl Management Plan and the United States Shorebird Conservation Plan.

Book chapter↗
USGS2022

The use of dye-tracing studies to delineate the recharge area for Manitou Cave in northwestern Alabama

In 2010 the U.S. Fish and Wildlife (USFWS) was petitioned to federally list the Manitou Cave Snail, (Antrorbis breweri ), a stygobiont endemic to Manitou Cave in northwestern Alabama. When an agency is tasked with determining whether to add a species to the Endangered Species List, one of the components examined is potential threats to the biota. Knowing the recharge area for a cave or spring is critical to identifying potential threats because of the interconnectivity between surface activities and groundwater quality/quantity in karst areas. Potential threats to water quality and quantity in Manitou Cave include recent subdivision developments, a nearby active quarry, land clearing, and several major highways. The 1.7 km-long cave is currently owned by a non-profit organization, Manitou Cave of Alabama, which oversees management, restoration, research, and documentation activities. In 2016, talks began between state and federal agencies and the new management in an effort to initiate new research to determine whether the snail merited listing. In 2019, a cooperative project between USFWS and the U.S. Geological Survey was started to delineate a recharge area for Manitou Cave through dye tracing. The current research will be used by USFWS to determine primary threats and to inform the decision of whether and how to list the Manitou Cave Snail under the Endangered Species Act.

Alabama↗
USGS2013

Greater Sage-Grouse National Research Strategy

The condition of the sagebrush ecosystem has been declining in the Western United States, and greater sage-grouse (Centrocercus urophasianus), a sagebrush-obligate species, has experienced concurrent decreases in distribution and population numbers. This has prompted substantial research and management over the past two decades to improve the understanding of sage-grouse and its habitats and to address the observed decreases in distribution and population numbers. The amount of research and management has increased as the year 2015 approaches, which is when the U.S. Fish and Wildlife Service (FWS) is expected to make a final decision about whether or not to protect the species under the Endangered Species Act. In 2012, the Sage-Grouse Executive Oversight Committee (EOC) of the Western Association of Fish and Wildlife Agencies (WAFWA) requested that the U.S. Geological Survey (USGS) lead the development of a Greater Sage-Grouse National Research Strategy (hereafter Research Strategy). This request was motivated by a practical need to systematically connect existing research and conservation plans with persisting or emerging information needs. Managers and researchers also wanted to reduce redundancy and help focus limited funds on the highest priority research and management issues. The USGS undertook the development of this Research Strategy, which addresses information and science relating to the greater sage-grouse and its habitat across portions of 11 Western States. This Research Strategy provides an outline of important research topics to ensure that science information gaps are identified and documented in a comprehensive manner. Further, by identifying priority topics and critical information needed for planning, research, and resource management, it provides a structure to help coordinate members of an expansive research and management community in their efforts to conduct priority research.

California, Colorado, Idaho, Montana, Nevada, Nort↗
USGS2018

Genetic diversity and structure from Antillean manatee (Trichechus manatus manatus) in the southern Gulf of Mexico: Comparison between connected and isolated populations

Antillean manatees ( Trichechus manatus manatus ), a subspecies of the West Indian manatee, is listed as endangered species in the Red List of Threatened Species of the International Union for Conservation of Nature. The aims of this research were to survey on the possible regional genetic structure in the southern Gulf of Mexico and to compare genetic status of a landlocked population in Laguna de las Ilusiones (IL) with individuals from localities with no barriers to displacement and breed (open population [OP]). We analyzed 45 manatee skin samples collected from different locations in Tabasco ( n = 38, including 19 from IL), Veracruz ( n = 3), Campeche ( n = 2), and Chiapas ( n = 2). The genomic DNA was isolated and PCR amplifications were performed for each sample using 28 microsatellite loci, previously designed for West Indian manatees and described as polymorphic for this species. Two clusters ( k = 2) were identified by STRUCTURE. The analysis of both a priori populations (IL and OP) indicate that the global values of F ST and R ST ( F ST =0.049, R ST =0.077) were significant. The H E for IL was 0.38 ± 0.03 and for OP was 0.49 ± 0.01. The average number of alleles N A for IL was 2.21 ± 0.09 and for OP was 2.32 ± 0.09. The overall inbreeding coefficient was F IS =−0.013 for analyzed populations. Genetic diversity was low. The IL population had slightly lower genetic diversity compared with OP, which could be explained by isolation of that small group, so conservation plans for IL should be considered as priority.

Tropical Conservation Science↗
USGS2010

The pallid sturgeon: Scientific investigations help understand recovery needs

Understanding of the pallid sturgeon (Scaphirhynchus albus) has increased significantly since the species was listed as endangered over two decades ago. Since 2005, scientists at the U.S. Geological Survey (USGS) Columbia Environmental Research Center (CERC) have been engaged in an interdisciplinary research program in cooperation with the U.S. Army Corps of Engineers Missouri River Recovery Program, U.S. Fish and Wildlife Service, Nebraska Game and Parks Commission, and numerous other State and Federal cooperators to provide managers and policy makers with the knowledge needed to evaluate recovery options. During that time, the USGS has worked collaboratively with river scientists and managers to develop methods, baseline information, and research approaches that are critical contributions to recovery success. The pallid sturgeon is endangered throughout the Missouri River because of insufficient reproduction and survival of early life stages. Primary management actions on the Missouri River designed to increase reproductive success and survival have focused on flow regime, channel morphology, and propagation. The CERC research strategies have, therefore, been designed to examine the linkages among flow regime, re-engineered channel morphology, and reproductive success and survival. Specific research objectives include the following: (1) understanding reproductive physiology of pallid sturgeon and relations to environmental conditions; (2) determining movement, habitat use, and reproductive behavior of pallid sturgeon; and (3) quantifying availability and dynamics of aquatic habitats needed by pallid sturgeon for all life stages.

Fact Sheet↗