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At least 163 records · Page 9Linked to original sources

Tropical insular fish assemblages are resilient to flood disturbance

Periods of stable environmental conditions, favoring development of ecological communities regulated by density-dependent processes, are interrupted by random periods of disturbance that may restructure communities. Disturbance may affect populations via habitat alteration, mortality, or displacement. We quantified fish habitat conditions, density, and movement before and after a major flood disturbance in a Caribbean island tropical river using habitat surveys, fish sampling and population estimates, radio telemetry, and passively monitored PIT tags. Native stream fish populations showed evidence of acute mortality and downstream displacement of surviving fish. All fish species were reduced in number at most life stages after the disturbance, but populations responded with recruitment and migration into vacated upstream habitats. Changes in density were uneven among size classes for most species, indicating altered size structures. Rapid recovery processes at the population level appeared to dampen effects at the assemblage level, as fish assemblage parameters (species richness and diversity) were unchanged by the flooding. The native fish assemblage appeared resilient to flood disturbance, rapidly compensating for mortality and displacement with increased recruitment and recolonization of upstream habitats.

Ecosphere↗

Assessing sloth bears as surrogates for carnivore conservation in Sri Lanka

Bears are large, charismatic mammals whose presence often garners conservation attention. Because healthy bear populations typically require large, contiguous areas of habitat, land conservation actions often are assumed to benefit co-occurring species, including other mammalian carnivores. However, we are not aware of an empirical test of this assumption. We used remote camera data from 2 national parks in Sri Lanka to test the hypothesis that the frequency of detection of sloth bears (Melursus ursinus) is associated with greater richness of carnivore species. We focused on mammalian carnivores because they play a pivotal role in the stability of ecological communities and are among Sri Lanka's most endangered species. Seven of Sri Lanka's carnivores are listed as endangered, vulnerable, or near threatened, and little empirical information exists on their status and distribution. During 2002–03, we placed camera traps at 152 sites to document carnivore species presence. We used Poisson regression to develop predictive models for 3 categories of dependent variables: species richness of (1) all carnivores, (2) carnivores considered at risk, and (3) carnivores of least conservation concern. For each category, we analyzed 8 a priori models based on combinations of sloth bear detections, sample year, and study area and used Akaike's information criterion (AIC c ) to test our research hypothesis. We detected sloth bears at 55 camera sites and detected 13 of Sri Lanka's 14 Carnivora species. Species richness of all carnivores showed positive associations with the number of sloth bear detections, regardless of study area. Sloth bear detections were also positively associated with species richness of carnivores at risk across both study years and study areas, but not with species richness of common carnivores. Sloth bears may serve as a valuable surrogate species whose habitat protection would contribute to conservation of other carnivores in Sri Lanka.

Ursus↗

Delaware River Basin

During the past 25 years, industry and government have made large financial investments in manufacturing, processing, and wastewater-treatment facilities to reduce the amount of contaminants being discharged. Although these investments have led to improved water quality across the Nation, concerns about the effects of nutrients, toxins, and pathogens on human health and that of ecological communities remain. To address the need for consistent and scientifically sound information for managing the Nation's water resources, the U.S. Geological Survey began the National Water-Quality Assessment (NAWQA) program in 1991. This program is unique in that it integrates surface- and ground-water-quality monitoring with the study of aquatic ecosystems. The goals of the NAWQA program are to (1) describe current water-quality conditions for a large part of the Nation's freshwater streams and aquifers (water-bearing sediments and rocks), (2) describe how water quality is changing over time, and (3) increase our understanding of the natural and human factors that affect water quality (Leahy and others, 1990, Gilliom and others, 1995). Assessing the quality of water in every location of the Nation would not be practical. Therefore, NAWQA investigations are conducted within 59 selected areas called study units (fig. 1). These study units encompass important river and aquifer systems in the United States and represent the diverse geographic, waterresource, land-use, and water-use characteristics of the Nation. The Delaware River Basin is one of 15 study units in which work began in 1996. Water-quality sampling in the study unit will begin in 1999. This fact sheet provides a brief overview of the NAWQA program, describes the Delaware River Basin study unit, identifies the major water-quality issues in the basin, and documents the plan of study that will be followed during the study-unit investigation.

Delaware, Maryland, New Jersey, New York, Pennsylv↗

Data Delivery and Mapping Over the Web: National Water-Quality Assessment Data Warehouse

The U.S. Geological Survey began its National Water-Quality Assessment (NAWQA) Program in 1991, systematically collecting chemical, biological, and physical water-quality data from study units (basins) across the Nation. In 1999, the NAWQA Program developed a data warehouse to better facilitate national and regional analysis of data from 36 study units started in 1991 and 1994. Data from 15 study units started in 1997 were added to the warehouse in 2001. The warehouse currently contains and links the following data: -- Chemical concentrations in water, sediment, and aquatic-organism tissues and related quality-control data from the USGS National Water Information System (NWIS), -- Biological data for stream-habitat and ecological-community data on fish, algae, and benthic invertebrates, -- Site, well, and basin information associated with thousands of descriptive variables derived from spatial analysis, like land use, soil, and population density, and -- Daily streamflow and temperature information from NWIS for selected sampling sites.

Fact Sheet↗

Scientific information in support of water resource management of the Big River area, Rhode Island

The Rhode Island Water Resources Board (RIWRB) is concerned that the demand for water may exceed the available public water supply in central and southern Rhode Island. Although water is often assumed to be plentiful in Rhode Island because of abundant rainfall, an adequate supply of water is not always available everywhere in the state during dry periods. Concerns that water demand may exceed supply are greatest during the summer, when lower water levels and increased drought potential combine with seasonal increases in peak water demand (Rhode Island Water Resources Board, 2012). High summer water demands are due to increases in outdoor water use, such as lawn watering and agricultural irrigation, and to increased summer population in coastal areas. Water-supply concerns are particularly acute in central and southern Rhode Island, where groundwater is the primary source of drinking water. The Big River and Mishnock River Basins are subbasins of the South Branch of the Pawtuxet River Basin in central and southern Rhode Island. These basins—referred to together as “the Big River area” for the purposes of this report—are undeveloped relative to other nearby areas and provide a potential source of high-quality public drinking water for central and southern Rhode Island. After the severe drought of the 1960s, the State of Rhode Island acquired land in the Big River area with the intention of building a water-supply reservoir. The reservoir was not built because of concerns over potential environmental impacts and projected statewide water-supply needs (U.S. Environmental Protection Agency, 1989). The land acquired for the reservoir (13.4 mi 2 ), called the Big River Management Area (BRMA), is currently managed by the RIWRB as a future source for public water supply and as open space. In the 1980s, the RIWRB began to consider whether the BRMA could supply water from its aquifers (groundwater). Groundwater withdrawals for public or other water-supply needs can alter the hydrologic conditions and ecologic communities of surrounding rivers, lakes, and wetlands by removing water from these systems. Consequently, the RIWRB was interested in determining optimal amounts of groundwater that could be withdrawn from the BRMA for public supply while minimizing the effects on rivers, lakes, streams, and wetlands that also rely on this water. For nearly two decades, the RIWRB has conducted a series of cooperative studies with the U.S. Geological Survey (USGS). The goals of these studies have been to (1) evaluate and characterize the water resources of the BRMA and the greater Big River area, and (2) identify sustainable levels of groundwater use that would minimize effects on water resources. This fact sheet describes the major findings of those studies.

Rhode Island↗

Developing ecological criteria for prescribed fire in South Florida pine rockland ecosystems

The pine rocklands of South Florida, characterized by a rich herbaceous flora with many narrowly endemic taxa beneath an overstory of south Florida slash pine (Pinus elliottii var. densa), are found in three areas: the Miami Rock Ridge of southeastern peninsular Florida, the Lower Florida Keys, and slightly elevated portions of the southern Big Cypress National Preserve. Fire is an important element in these ecosystems, since in its absence the pine canopy is likely to be replaced by dense hardwoods, resulting in loss of the characteristic pineland herb flora. Prescribed fire has been used in Florida Keys pine forests since the creation of the National Key Deer Refuge (NKDR), with the primary aim of reducing fuels. Because fire can also be an effective tool in shaping ecological communities, we conducted a 4-year research study which explored a range of fire management options in NKDR. The intent of the study was to provide the Fish and Wildlife Service and other land managers with information regarding when and where to burn in order to perpetuate these unique forests. In 1998 we initiated a burning experiment in a randomized complete block design. Three treatments were to be carried out in a single well-defined block in each of two characteristic understory types during each year from 1998 through 2000. One understory type was characterized by a relatively sparse shrub layer and a well-developed herb layer ('open'), and the second had a dense shrub layer and poorly developed herb layer ('shrubby'). The three burn treatments were: (a) summer burn, (b) winter burn, and (c) no burn, or control. Three 1- ha plots were established in each block, and randomly assigned to the three treatments. Though the first year experimental burns were carried out without incident, constraints posed by external factors, including nationwide and statewide prohibitions on prescribed burning due to wildfires in other regions, delayed the experimental burns and precluded collection of postburn data on one third of the burns. Ultimately we burned only eleven plots, three in winter and eight in summer, over a four-year period from 1998 to 2001. Vegetation was sampled in a stratified, nested design within 18 plots. Trees were sampled in a 1.0-ha plot, shrubs in twenty 50-m2 circular (radius 4 m) subplots within the tree plot, and the herb layer in four circular 1-m2 quadrats (radius 0.57 m) within each subplot. The amount of fuel in the shrub layer was estimated by applying regression models to plant dimensional data, and ground layer fuel was estimated by a harvest method. The effects of Key deer herbivory on regeneration of the understory pine rockland plant community after fire was studied by monitoring inside and outside exclosures established within two of the six blocks. Pine trees constituted more than half (53.3%) of the biomass, but understory fine fuels comprised a surprisingly high proportion of total aboveground biomass. In the three blocks in which paired summer and winter burns were successfully conducted, the summer burns were more intense than the winter burns as judged by our indicators of fire intensity. Because of the differences in fire intensity between seasons, it was not possible to say whether observed differences in vegetation response between summer and winter burns were due to season or to fire intensity. The mortality of South Florida slash pine trees was greater after the summer burn than the winter burn in each block, but other vegetation responses were rarely as consistent. For instance, Metopium showed less recovery after summer burns in two blocks and after the winter burn in the third block. Moreover, there were instances in which alternative growth stages of the same species responded differently. Adult palms succumbed more frequently to summer than winter burns, and mortality of Coccothrinax exceeded that of Thrinax. In contrast, small palms recovered more readily after summer burns than winter burns. High in

Florida↗

Biophysical assessment for indemnity selection of Federal Lands in Colorado

Information on the biophysical features of Federal lands identified as suitable for transfer to the State of Colorado was requested by the Bureau of Land Management (BLM). This information is intended for use in conducting an Environmental Assessment prior to the transfer of ownership (conveyance) to the State. The Colorado State Land Board filed a selective application to obtain public land and mineral estate in lieu of lands to which the State of Colorado was entitled but did not receive at the time of statehood. To address this legal obligation, 339 parcels of Federal lands (organized into 89 indemnity units [IUs]), currently under management by the BLM, have been identified as suitable for transfer to the State. The IUs include 23,130 acres of surface and mineral estate and 6,150 acres of mineral estate only. The specific land parcels to be transferred to the State will be finalized after an Environmental Assessment and other evaluations are completed. To provide the biophysical information necessary for conducting a future Environmental Assessment of the potential effects of the proposed land transfer, information on ecological communities, soil characteristics, and land use was summarized at three levels: (1) all of Colorado, (2) lands under the jurisdiction of the BLM, and (3) the 89 IUs. Information was also synthesized and summarized for 179 plant and animal species or subspecies of management concern to evaluate which species had the potential for occurrence on IUs. Datasets summarized for Colorado and for indemnity units and methodological details for all data summaries are provided in U.S. Geological Survey data releases available online at https://doi.org/10.5066/F7GT5MGV and https://doi.org/10.5066/F7C24VQ0 .

Colorado↗

Analysis of changes in water-level dynamics at selected sites in the Florida Everglades

The historical modification and regulation of the hydrologic patterns in the Florida Everglades have resulted in changes in the ecosystem of South Florida and the Florida Everglades. Since the 1970s, substantial focus has been given to the restoration of the Everglades ecosystem. The U.S. Geological Survey through its Greater Everglades Priority Ecosystem Science and National Water-Quality Assessment Programs has been providing scientific information to resource managers to assist in the Everglades restoration efforts. The current investigation included development of a simple method to identify and quantify changes in historical hydrologic behavior within the Everglades that could be used by researchers to identify responses of ecological communities to those changes. Such information then could be used by resource managers to develop appropriate water-management practices within the Everglades to promote restoration. The identification of changes in historical hydrologic behavior within the Everglades was accomplished by analyzing historical time-series water-level data from selected gages in the Everglades using (1) break-point analysis of cumulative Z-scores to identify hydrologic changes and (2) cumulative water-level frequency distribution curves to evaluate the magnitude of those changes. This analytical technique was applied to six long-term water-level gages in the Florida Everglades. The break-point analysis for the concurrent period of record (1978–2011) identified 10 common periods of changes in hydrologic behavior at the selected gages. The water-level responses at each gage for the 10 periods displayed similarity in fluctuation patterns, highlighting the interconnectedness of the Florida Everglades hydrologic system. While the patterns were similar, the analysis also showed that larger fluctuations in water levels between periods occurred in Water Conservation Areas 2 and 3 in contrast to those in Water Conservation Area 1 and the Everglades National Park. Results from the analysis indicate that the cumulative Z-score curve, in conjunction with cumulative water-level frequency distribution curves, can be a useful tool in identifying and quantifying changes in historical hydrologic behavior within the Everglades. In addition to the analysis, a spreadsheet application was developed to assist in applying these techniques to time-series water-level data at gages within the Everglades and is included with this report.

Florida↗

Assessment of groundwater trends near Crex Meadows, Wisconsin

Crex Meadows Wildlife Area (Crex) is a 30,000-acre property in Burnett County, Wisconsin. Crex is managed by the Wisconsin Department of Natural Resources (WDNR) with the goal of providing public recreation opportunities while also protecting the quality of native ecological communities and species on the property. The WDNR’s management strategy includes controlling water levels at flowages in Crex using a system of dikes, water control structures, ditches, and a diversion pump. For the past several decades there has been concern among nearby landowners that the water manage-ment strategy at Crex may be contributing to groundwater flooding in adjacent, privately held properties. This issue has been particularly contentious during periods when regional groundwater elevations are already high. This study was conducted in response to those concerns. For the study, a network of 12 monitoring wells was installed in and to the west of Crex. Groundwater elevations were recorded in the wells before, during, and after water-level changes in the western Crex flowages to assess if groundwater elevations to the west of Crex are detectably affected by the flowage water levels. This study successfully collected groundwater elevations in 11 study wells during a 3-month period in 2019 when water elevations in the Dike 6 flowage and Erickson flowage were lowered and then raised. The data logger at a 12th location failed and no data were recorded. The groundwater elevation trends in these study wells were compared with groundwater elevation trends at a regional U.S. Geological Survey well to provide information for determining if changing the flowage elevations had a noticeable response in the study wells west of Crex Meadows. This analysis was done by (1) evaluating study well groundwater elevation trends compared to the regional well, (2) using a scatter plot of study well and regional well data during raising and lowering periods, (3) assessing horizontal hydraulic gradient data during the study period, and (4) assessing the cumulative departure from the mean groundwater elevation for each well. Overall, regional groundwater elevations had a down-ward trend before and during the flowage lowering period and then had an upward trend during the flowage raising period. This pattern was observed in the regional well and in all the study wells adjacent to and several miles from the flowages. The similarity in patterns indicates that precipitation and regional groundwater flow conditions were the dominant drivers of the system during the study period. The scatter plot and cumulative departure from the mean analysis showed that in addition to regional trends, wells 1, 6, and 7 were likely affected by the changes in the flowage water levels. Overall, at least on the timescale of this study, water management at Crex likely did not have detectable effects on wells outside the Crex property. Wells installed on the Crex property including the wells in the lakebeds of the flowages (wells 1 and 7) and possibly well 6 east of the flowages showed what seems to be minor affects due to water management at Crex.

Wisconsin↗

Editorial: Plant-soil interactions under changing climate

The health and well-being of plants and soil is crucial for all life on Earth. It is well-known that vegetation cover follows climatic zones, and plants respond to climatic drivers such as temperature and precipitation (Seddon et al., 2016; Kattge et al., 2020). It is also well-known that plant health depends on the properties and health of the soil (Ephrath et al., 2020), and that strong interactions among biota above and belowground dictate the functioning of both realms (Van der Putten et al., 2013). Yet, soils and the processes occurring belowground are often considered a “black box,” and are treated very simplistically in our efforts to understand, quantify, and model the future of the planet. Our understanding of the interactions between plants and soils is also far from complete and offers some of the most important research frontiers in community ecology, biogeochemistry, and global change science.

Frontiers in Plant Science↗

Diets and stable isotope signatures of native and nonnative Leucisid fishes advances our understanding of the Yellowstone Lake food web

(1) Many forage fishes, such as Leucisids (minnows) have depauperate studies on diet composition or stable isotope signatures, as these fishes are often only viewed as food for higher trophic levels. The need exists to understand and document the diet and stable isotope signatures of Leucisids (redside shiner, longnose dace, lake chub) in relation to the community ecology and food-web dynamics in Yellowstone Lake, especially given an invasive piscivore introduction and potential future effects of climate change on the Yellowstone Lake ecosystem. (2) Diet data collected during summer of 2020 were analyzed by species using proportion by number, frequency of occurrence, and mean proportion by weight, and diet overlap was compared using Schoener’s index (D). Stable isotope (δ 15 N and δ 13 C) values were estimated by collecting tissue during the summer of 2020 by species, and isotopic overlap was compared using 40% Bayesian ellipses. (3) Nonnative redside shiners and lake chub had similar diets, and native longnose dace diet differed from the nonnative Leucisids. Diet overlap was also higher between the nonnative Leucisids, and insignificant when comparing native and nonnative Leucisids. No evidence existed to suggest a difference in δ 15 N signatures among the species. Longnose dace had a mean δ 13 C signature of −15.65, indicating an decreased reliance on pelagic prey compared to nonnative Leucisids. Nonnative redside shiners and lake chub shared 95% of isotopic niche space, but stable isotope overlap was <25% for comparisons between native longnose dace and the nonnative Leucisids. (4) This study established the diet composition and stable isotope signatures of Leusicids residing in Yellowstone Lake, thus expanding our knowledge of Leucisid feeding patterns and ecology in relation to the native and nonnative species in the ecosystem. We also expand upon our knowledge of Leucisids in North America. Additionally, quantifying minnow diets can provide a baseline for understanding food web response to invasive suppression management actions.

Wyoming↗

Evaluating spatial coverage of the greater sage-grouse umbrella to conserve sagebrush-dependent species biodiversity within the Wyoming basins

Biodiversity is threatened due to land-use change, overexploitation, pollution, and anthropogenic climate change, altering ecosystem functioning around the globe. Protecting areas rich in biodiversity is often difficult without fully understanding and mapping species’ ecological niche requirements. As a result, the umbrella species concept is often applied, whereby conservation of a surrogate species is used to indirectly protect species that occupy similar ecological communities. One such species is the greater sage-grouse ( Centrocercus urophasianus ), which has been used as an umbrella to conserve other species within the sagebrush ( Artemisia spp.) ecosystem. Sagebrush-steppe ecosystems within the United States have experienced drastic loss, fragmentation, and degradation of remaining habitat, threatening sagebrush-dependent fauna, resulting in west-wide conservation efforts to protect sage-grouse habitats, and presumably other sagebrush wildlife. We evaluated the effectiveness of the greater sage-grouse umbrella to conserve biodiversity using data-driven spatial occupancy and abundance models for seven sagebrush-dependent (obligate or associated) species across the greater Wyoming Basins Ecoregional Assessment (WBEA) area (345,300 km 2 ) and assessed overlap with predicted sage-grouse occurrence. Predicted sage-grouse habitat from empirical models only partially (39–58%) captured habitats identified by predicted occurrence models for three sagebrush-obligate songbirds and 60% of biodiversity hotspots (richness of 4–6 species). Sage-grouse priority areas for conservation only captured 59% of model-predicted sage-grouse habitat, and only slightly fewer (56%) biodiversity hotspots. We suggest that the greater sage-grouse habitats may be partially effective as an umbrella for the conservation of sagebrush-dependent species within the sagebrush biome, and management actions aiming to conserve biodiversity should directly consider the explicit mapping of resource requirements for other taxonomic groups.

Land↗

Simulation of post-hurricane impact on invasive species with biological control management

Understanding the effects of hurricanes and other large storms on ecological communities and the post-event recovery in these communities can guide management and ecosystem restoration. This is particularly important for communities impacted by invasive species, as the hurricane may affect control efforts. Here we consider the effect of a hurricane on tree communities in southern Florida that has been invaded by Melaleuca quinquevervia (melaleuca), an invasive Australian tree. Biological control agents were introduced starting in the 1990s and are reducing melaleuca in habitats where they are established. We used size-structured matrix modeling as a tool to project the continued possible additional effects of a hurricane on a pure stand of melaleuca that already had some level of biological control. The model results indicate that biological control could suppress or eliminate melaleuca within decades. A hurricane that does severe damage to the stand may accelerate the trend toward elimination of melaleuca with both strong and moderate biological control. However, if the biological control is weak, the stand is resilient to all but extremely severe hurricane damage. Although only a pure melaleuca stand was simulated in this study, other plants, such as natives, are likely to accelerate the decline of melaleuca due to competition. Our model provides a new tool to simulate post-hurricanes effect on invasive species and highlights the essential role that biological control has played on invasive species management.

Florida↗

Relative value of managed wetlands and tidal marshlands for wintering northern pintails

Northern pintail Anas acuta (hereafter, pintail) populations have declined substantially throughout the western US since the 1970s, largely as a result of converting wetlands to cropland. Managed wetlands have been developed throughout the San Francisco Bay estuaries to provide wildlife habitat, particularly for waterfowl. Many of these areas were historically tidal baylands and plans are underway to remove dikes and restore tidal action. The relationship between tidal baylands and waterfowl populations is poorly understood. Our objective was to provide information on selection and avoidance of managed and tidal marshland by pintails. During 1991&ndash;1993 and 1998&ndash;2000, we radio-marked and relocated 330 female pintails (relocations, n =11,574) at Suisun Marsh, the largest brackish water estuary within San Francisco Bay, to estimate resource selection functions during the nonbreeding months (winter). Using a distance-based modeling approach, we calculated selection functions for different ecological communities (e.g., tidal baylands) and investigated variation explained by time of day (day or night hours) to account for differences in pintail behavior (i.e., foraging vs. roosting). We found strong evidence for selection of managed wetlands. Pintails also avoided tidal marshes and bays and channels. We did not detect differences in selection function between day and night hours for managed wetlands but the degree of avoidance of other habitats varied by time of day. We also found that areas subjected to tidal action did not influence the selection of immediately adjacent managed wetlands. If current management goals include providing habitat for wintering waterfowl populations, particularly pintail, then we recommend wildlife managers focus tidal restoration on areas that are not currently managed wetland and/or improve conditions in areas of managed wetlands to increase local carrying capacities

California↗

Are you sleeping? Are you sleeping? Predicting invasion potential of sleeper species

Sleeper species are non-native species that are established in a region and could become invasive as climate change makes conditions more favorable for many non-native species. Before we can manage potential sleepers, we must first know their identity. We analyzed non-native, established plants in the Northeast United States (CT, MA, ME, NH, NY, RI, VT) using the Environmental Impact Classification for Alien Taxa (EICAT) protocol to identify species that have negative impacts on native ecological communities as well as negative impacts on agriculture, economies, or human health. Here, we highlight four potential sleeper species to watch out for. A full list of potential sleeper species and reported impacts can be found at https://doi.org/10.7275/yfss-tt69.

Connecticut, Maine, Massachusetts, New Hampshire, ↗

Distribution and seasonal differences in Pacific Lamprey and Lampetra spp eDNA across 18 Puget Sound watersheds

Lampreys have a worldwide distribution, are functionally important to ecological communities and serve significant roles in many cultures. In Pacific coast drainages of North America, lamprey populations have suffered large declines. However, lamprey population status and trends within many areas of this region are unknown and such information is needed for advancing conservation goals. We developed two quantitative PCR-based, aquatic environmental DNA (eDNA) assays for detection of Pacific Lamprey ( Entosphenus tridentatus ) and Lampetra spp, using locked nucleic acids (LNAs) in the probe design. We used these assays to characterize the spatial distribution of lamprey in 18 watersheds of Puget Sound, Washington, by collecting water samples in spring and fall. Pacific Lamprey and Lampetra spp were each detected in 14 watersheds and co-occurred in 10 watersheds. Lamprey eDNA detection rates were much higher in spring compared to fall. Specifically, the Pacific Lamprey eDNA detection rate was 3.5 times higher in spring and the Lampetra spp eDNA detection rate was 1.5 times higher in spring even though larval lamprey are present in streams year-round. This significant finding highlights the importance of seasonality on eDNA detection. Higher stream discharge in the fall likely contributed to reduced eDNA detection rates, although seasonal life history events may have also contributed. These eDNA assays differentiate Pacific Lamprey and Lampetra spp across much of their range along the west coast of North America. Sequence analysis indicates the Pacific Lamprey assay also targets other Entosphenus spp and indicates the Lampetra spp assay may have limited or no capability of detecting Lampetra in some locations south of the Columbia River Basin. Nevertheless, these assays will serve as a valuable tool for resource managers and have direct application to lamprey conservation efforts, such as mapping species distributions, occupancy modeling, and monitoring translocations and reintroductions.

Puget Sound↗

Sea otters past and present perspectives

Sea otters have been an important resource for people living along the North Pacific coast for thousands of years. At least two aspects of the sea otters' natural history have linked them with humans: their pelt and their food habits. Sea otter pelts, arguably the finest in the animal kingdom, were fashioned into garments, particularly in northern latitudes, while the presence of sea otters influenced the availability of some marine invertebrates, like snails, clams and abalone, that provided food for coastal people. In addition, sea otters spurred a growing fur trade after Vitus Bering's explorations of the North Pacific in the early 1700s revealed their widespread abundance. This commercial harvest was instrumental in European exploration and settlement of the Pacific Rim and led to the near-extermination of the sea otter, Enhydra lutris, in following centuries. Largely because of their life history and their direct relations with coastal residents, sea otters are a comparatively well-understood marine mammal. During the past few decades, concern for sea otters has broadened to encompass an interest in global resource conservation and restoration, as well as community ecology. This more recent focus on sea otters now extends to humans far removed from marine environments. Early sea otters evolved about 12 million years ago from Eurasian and African ancestors. They reached the North Pacific by way of two proposed migration paths, one along the Bering Land Bridge between northeastern Asia and northwestern North America and a second from the Atlantic Ocean that entered the Pacific through a channel in the central Americas. Modern sea otters occur only in the North Pacific and have occupied their current range for the past 1 million to 3 million years.

Alaska Geographic↗

Hierarchical Bayes estimation of species richness and occupancy in spatially replicated surveys

1. Species richness is the most widely used biodiversity metric, but cannot be observed directly as, typically, some species are overlooked. Imperfect detectability must therefore be accounted for to obtain unbiased species-richness estimates. When richness is assessed at multiple sites, two approaches can be used to estimate species richness: either estimating for each site separately, or pooling all samples. The first approach produces imprecise estimates, while the second loses site-specific information. 2. In contrast, a hierarchical Bayes (HB) multispecies site-occupancy model benefits from the combination of information across sites without losing site-specific information and also yields occupancy estimates for each species. The heart of the model is an estimate of the incompletely observed presence-absence matrix, a centrepiece of biogeography and monitoring studies. We illustrate the model using Swiss breeding bird survey data, and compare its estimates with the widely used jackknife species-richness estimator and raw species counts. 3. Two independent observers each conducted three surveys in 26 1-km(2) quadrats, and detected 27-56 (total 103) species. The average estimated proportion of species detected after three surveys was 0.87 under the HB model. Jackknife estimates were less precise (less repeatable between observers) than raw counts, but HB estimates were as repeatable as raw counts. The combination of information in the HB model thus resulted in species-richness estimates presumably at least as unbiased as previous approaches that correct for detectability, but without costs in precision relative to uncorrected, biased species counts. 4. Total species richness in the entire region sampled was estimated at 113.1 (CI 106-123); species detectability ranged from 0.08 to 0.99, illustrating very heterogeneous species detectability; and species occupancy was 0.06-0.96. Even after six surveys, absolute bias in observed occupancy was estimated at up to 0.40. 5. Synthesis and applications. The HB model for species-richness estimation combines information across sites and enjoys more precise, and presumably less biased, estimates than previous approaches. It also yields estimates of several measures of community size and composition. Covariates for occupancy and detectability can be included. We believe it has considerable potential for monitoring programmes as well as in biogeography and community ecology.

Journal of Applied Ecology↗