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At least 163 records · Page 9Linked to original sources
USGS2019

Signatures of adaptive divergence among populations of an avian species of conservation

Understanding the genetic underpinning of adaptive divergence among populations is a key goal of evolutionary biology and conservation. Gunnison sage‐grouse ( Centrocercus minimus ) is a sagebrush obligate species with a constricted range consisting of seven discrete populations, each with distinctly different habitat and climatic conditions. Though geographically close, populations have low levels of natural gene flow resulting in relatively high levels of differentiation. Here, we use 15,033 SNP loci in genomic outlier analyses, genotype–environment association analyses, and gene ontology enrichment tests to examine patterns of putatively adaptive genetic differentiation in an avian species of conservation concern. We found 411 loci within 5 kbp of 289 putative genes associated with biological functions or pathways that were overrepresented in the assemblage of outlier SNPs. The identified gene set was enriched for cytochrome P450 gene family members (CYP4V2, CYP2R1, CYP2C23B, CYP4B1) and could impact metabolism of plant secondary metabolites, a critical challenge for sagebrush obligates. Additionally, the gene set was also enriched with members potentially involved in antiviral response (DEAD box helicase gene family and SETX). Our results provide a first look at local adaption for isolated populations of a single species and suggest adaptive divergence in multiple metabolic and biochemical pathways may be occurring. This information can be useful in managing this species of conservation concern, for example, to identify unique populations to conserve, avoid translocation or release of individuals that may swamp locally adapted genetic diversity, or guide habitat restoration efforts.

Arizona, Colorado, New Mexico, Utah↗
USGS2019

Overview of emerging amphibian pathogens and modeling advances for conservation-related decisions

One of the leading causes of global amphibian decline is emerging infectious disease. We summarize the disease ecology of four major emerging amphibian infectious agents: chytrids, ranaviruses, trematodes, and Perkinsea. We focus on recently developed quantitative advances that build on well-established ecological theories and aid in studying epizootic and enzootic disease dynamics. For example, we identify ecological and evolutionary selective forces that determine disease outcomes and transmission pathways by borrowing ideas from population and community ecology theory. We outline three topics of general interest in disease ecology: (i) the relationship between biodiversity and disease risk, (ii) individual, species, or environmental transmission heterogeneity, and (iii) pathogen coinfections. Finally, we identify specific knowledge gaps impeding the success of conservation-related decisions for disease mitigation and the future of amphibian conservation success.

Biological Conservation↗
USGS2012

A national geographic framework for guiding conservation on a landscape scale

The U.S. Fish and Wildlife Service, along with the global conservation community, has recognized that the conservation challenges of the 21st century far exceed the responsibilities and footprint of any individual agency or program. The ecological effects of climate change and other anthropogenic stressors do not recognize geopolitical boundaries and, as such, demand a national geographic framework to provide structure for cross-jurisdictional and landscape-scale conservation strategies. In 2009, a new map of ecologically based conservation regions in which to organize capacity and implement strategic habitat conservation was developed using rapid prototyping and expert elicitation by an interagency team of U.S. Fish and Wildlife Service and U.S. Geological Survey scientists and conservation professionals. Incorporating Bird Conservation Regions, Freshwater Ecoregions, and U.S. Geological Survey hydrologic unit codes, the new geographic framework provides a spatial template for building conservation capacity and focusing biological planning and conservation design efforts. The Department of Interior's Landscape Conservation Cooperatives are being organized in these new conservation regions as multi-stakeholder collaborations for improved conservation science and management.

Journal of Fish and Wildlife Management↗
USGS2006

Conservation genetics in the USGS

Conservation genetics is the application of the tools and concepts of genetics to the conservation of biological resources. Once too sophisticated and expensive for routine use, the tools of conservation genetics are now widely used to address many complex management questions. These novel methods of analysis can augment assessments made with traditional methods and can bring new information to light. The U.S. Geological Survey (USGS) is well suited to provide scientific information and expertise using these tools to support the management of biological resources.

Fact Sheet↗
USGS1986

The boundary model: A geographical analysis of design and conservation of nature reserves

It is widely recognised that nearly all parks and reserves are too small to protect their biological diversity. In response to this problem, we have been developing a multidisciplinary ‘boundary model’ that focuses upon the processes of exchange across the administrative edges of nature reserves. The model incorporates known dynamics from various disciplines and describes the interactions of these forces across the boundary. These disciplines include biogeography, ecology, and human effects, influences and attitudes in an understanding of reserve boundary vulnerability and effectiveness. The boundary model recognises the development of edges in association with the establishment of the administrative boundary. However, it discerns between ‘natural’ and ‘generated’ edges that are based upon the differing stimuli for their development and change. Segmentation of the boundary is recognised as a manifestation of environmental heterogeneity. The boundary model suggests that exposure of the reserve is a major determinate of potential vulnerability. Effectiveness of reserve protection is hypothesised to be more dependent upon what crosses the boundary than upon any internal processes alone.

Biological Conservation↗
USGS2010

Occurrence and distribution of Indian primates

Global and regional species conservation efforts are hindered by poor distribution data and range maps. Many Indian primates face extinction, but assessments of population status are hindered by lack of reliable distribution data. We estimated the current occurrence and distribution of 15 Indian primates by applying occupancy models to field data from a country-wide survey of local experts. We modeled species occurrence in relation to ecological and social covariates (protected areas, landscape characteristics, and human influences), which we believe are critical to determining species occurrence in India. We found evidence that protected areas positively influence occurrence of seven species and for some species are their only refuge. We found evergreen forests to be more critical for some primates along with temperate and deciduous forests. Elevation negatively influenced occurrence of three species. Lower human population density was positively associated with occurrence of five species, and higher cultural tolerance was positively associated with occurrence of three species. We find that 11 primates occupy less than 15% of the total land area of India. Vulnerable primates with restricted ranges are Golden langur, Arunachal macaque, Pig-tailed macaque, stump-tailed macaque, Phayre's leaf monkey, Nilgiri langur and Lion-tailed macaque. Only Hanuman langur and rhesus macaque are widely distributed. We find occupancy modeling to be useful in determining species ranges, and in agreement with current species ranking and IUCN status. In landscapes where monitoring efforts require optimizing cost, effort and time, we used ecological and social covariates to reliably estimate species occurrence and focus species conservation efforts. ?? Elsevier Ltd.

Biological Conservation↗
USGS2016

Combining landscape variables and species traits can improve the utility of climate change vulnerability assessments

Conservation organizations worldwide are investing in climate change vulnerability assessments. Most vulnerability assessment methods focus on either landscape features or species traits that can affect a species vulnerability to climate change. However, landscape features and species traits likely interact to affect vulnerability. We compare a landscape-based assessment, a trait-based assessment, and an assessment that combines landscape variables and species traits for 113 species of birds, herpetofauna , and mammals in the northeastern United States. Our aim is to better understand which species traits and landscape variables have the largest influence on assessment results and which types of vulnerability assessments are most useful for different objectives. Species traits were most important for determining which species will be most vulnerable to climate change. The sensitivity of species to dispersal barriers and the species average natal dispersal distance were the most important traits. Landscape features were most important for determining where species will be most vulnerable because species were most vulnerable in areas where multiple landscape features combined to increase vulnerability, regardless of species traits. The interaction between landscape variables and species traits was important when determining how to reduce climate change vulnerability. For example, an assessment that combines information on landscape connectivity, climate change velocity, and natal dispersal distance suggests that increasing landscape connectivity may not reduce the vulnerability of many species. Assessments that include landscape features and species traits will likely be most useful in guiding conservation under climate change.

Biological Conservation↗
USGS2018

The non-linear, interactive effects of population density and climate drive the geographical patterns of waterfowl survival

On-going climate change has major impacts on ecological processes and patterns. Understanding the impacts of climate on the geographical patterns of survival can provide insights to how population dynamics r espond to climate change and provide important information for the development of appropriate conservation strategies at regional scales. It is challenging to understand the impacts of climate on survival, however, due to the fact that the non-linear relationship between survival and climate can be modified by density-dependent processes. In this study we extended the Brownie model to partition hunting and non-hunting mortalities and linked non-hunting survival to covariates. We applied this model to four decades (1972–2014) of waterfowl band-recovery, breeding population s urvey, and precipitation and temperature data covering multiple ecological regions to examine the non-linear, interactive effects of population density and climate on waterfowl non-hunting survival at a regional scale. Our results showed that the non-linear effect of temperature on waterfowl non-hunting survival was modified by breeding population density. The concave relationship between non-hunting survival and temperature suggested that the effects of warming on waterfowl survival might be multifaceted. Furthermore, the relationship between non-hunting survival and temperature was stronger when population density was higher, suggesting that high-density populations may be less buffered against warming than low-density populations. Our study revealed distinct relationships between waterfowl non-hunting survival and climate across and within ecological regions, highlighting the importance of considering different conservation strategies according to region-specific population and climate conditions. Our findings and associated novel modelling approach have wide implications in conservation practice.

Biological Conservation↗
USGS1998

Ecoregions as a level of ecological analysis

There have been many attempts to classify geographic areas into zones of similar characteristics. Recent focus has been on ecoregions. We examined how well the boundaries of the most commonly used ecoregion classifications for the US matched the boundaries of existing vegetation cover mapped at three levels of classification, fine, mid- and coarse scale. We analyzed ecoregions in Idaho, Oregon and Washington. The results were similar among the two ecoregion classifications. For both ecoregion delineations and all three vegetation classifications, the patterns of existing vegetation did not correspond well with the patterns of ecoregions. Most vegetation types had a small proportion of their total area in a given ecoregion. There was also no dominance by one or more vegetation types in any ecoregion and contrary to our hypothesis, the level of congruence of vegetation patterns with ecoregion boundaries decreased as the level of classification became more general. The implications of these findings on the use of ecoregions as a planning tool and in the development of land conservation efforts are discussed.

Biological Conservation↗
USGS2012

Changes in avian and plant communities of aspen woodlands over 12 years after livestock removal in the northwestern Great Basin

Riparian and quaking aspen (Populus tremuloides) woodlands are centers of avian abundance and diversity in the western United States, but they have been affected adversely by land use practices, particularly livestock grazing. In 1990, cattle were removed from a 112,500-ha national wildlife refuge in southeastern Oregon. Thereafter, we monitored changes in vegetation and bird abundance in years 1–3 (phase 1) and 10–12 (phase 2) in 17 riparian and 9 snow-pocket aspen plots. On each 1.5-ha plot, we sampled vegetation in 6 transects. Three times during each breeding season, observers recorded all birds 50 m to each side of the plot's 150-m centerline for 25 minutes. We analyzed data with multivariate analysis of variance and paired t tests with p values adjusted for multiple comparisons. In both periods, riparian and snow-pocket aspen produced extensive regeneration of new shoots (x̄ = 2646 stems/ha and 7079 stems/ha, respectively). By phase 2, a 64% increase in medium-diameter trees in riparian stands indicated successful recruitment into the overstory, but this pattern was not seen in snow-pocket stands, where the density of trees was over 2 times greater. By phase 2 in riparian and snow-pocket stands, native forb cover had increased by 68% and 57%, respectively, mesic shrub cover had increased by 29% and 58%, and sagebrush cover had decreased by 24% and 31%. Total avian abundance increased by 33% and 39% in riparian and snow-pocket aspen, respectively, ground or understory nesters increased by 133% and 67% and overstory nesters increased by 34% and 33%. Similarly, ground or understory foragers increased by 25% and 32%, aerial foragers by 55% and 57%, and overstory foragers by 66% and 43%. We interpreted the substantial regeneration of aspen shoots, increased densities of riparian forbs and shrubs, and increased avian abundances as a multitrophic-level response to the total removal of livestock and as substantial movement toward recovery of biological integrity.

Aspen Woodlands;Great Basin↗
USGS2019

Functional and geographic components of risk for climate sensitive vertebrates in the Pacific Northwest, USA

Rarity and life history traits inform multiple dimensions of intrinsic risk to climate and environmental change and can help systematically identify at-risk species. We quantified relative geographic rarity (area of occupancy), climate niche breadth, and life history traits for 114 freshwater fishes, amphibians, and reptiles in the U.S. Pacific Northwest. Our approach leveraged presence-only, publicly available data and traits-based inference to evaluate area of occupancy, climate sensitivity (i.e., climate niche breadth), and a Rarity and Climate Sensitivity (RCS) index of all species across multiple geographic extents, grain sizes, and data types. The RCS index was relatively stable across extents, grains, and data types, with climate sensitivity differentiating species with otherwise similar areas of occupancy. We also found that species with sensitivity-associated traits (e.g., long generation time, low fecundity) were not necessarily the same species identified as at-risk with geographical approaches (small range size, small climate niche breadth). Many multispecies assessments using coarse-scale data (e.g., entire range maps or convex-hull approaches) often focus on a single dimension of intrinsic risk; others rely on data-intensive models only applicable to a few well-studied species. What remains is a need for an approach that enables multispecies, multidimensional assessment efforts. This is particularly true at regional scales, where management needs require assessments that are intermediate to coarse- and fine-scale approaches. We demonstrate that by considering multiple dimensions of intrinsic risk to climate change (range size, climate sensitivity, and traits), site-specific locality data may offer a pathway for ensuring vulnerable, understudied species do not go overlooked in conservation.

Pacific Northwest↗
USGS2021

When introduced prey violates trophic hierarchy: Conservation of an endangered predator

Introduced species often disrupt established food webs, but some native predators can come to rely on introduced prey. Understanding the net effects of the non-natives on imperiled predators is crucial for planning conservation measures. The invasive American bullfrog ( Lithobates catesbeianus ) can be prey, predator, and competitor for the critically endangered San Francisco garter snake ( Thamnophis sirtalis tetrataenia ). We examined the seasonal prey use of a San Francisco garter snake population that co-occurs with American bullfrogs to examine intraguild predation between these species. Juvenile and adult snakes mainly consumed native anurans instead of American bullfrogs, and this diet pattern peaked in spring, a critical foraging period for the snakes. In spring, large adult American bullfrogs also foraged heavily on native anurans and displayed a high degree of diet overlap with San Francisco garter snakes. Invasive American bullfrogs are detrimental to San Francisco garter snakes mainly through seasonal competition rather than reciprocal predation. Removal of invasive species provided further evidence that eliminating American bullfrogs can benefit San Francisco garter snakes by reducing predation pressure on their shared amphibian prey. Better understanding the interactions of invasive species with native species of conservation concern informs management practices and improves conservation outcomes.

Biological Conservation↗
USGS2023

Cryptic declines of small, cold-water specialists highlight potential vulnerabilities of headwater streams as climate refugia

Increasing temperatures and climate-driven disturbances like wildfire are a growing threat to many species, including cold-water specialists. Montane areas and cold streams are often considered climate refugia that buffer communities against change. However, climate refugia are often species-specific, and despite growing awareness that life histories and habitat requirements shape responses to change, small or non-game species are often under-represented in monitoring and planning programs. A recent study in Montana, USA, revealed much larger warming-related declines in occupancy for small, non-game slimy sculpin ( Cottus cognatus ) between 1993 and 1995 and 2011–2013 than for two socially valued salmonid fishes that shape regional conservation efforts. To broaden insight into climate change vulnerabilities of headwater stream communities, we analyzed data for Rocky Mountain tailed frogs ( Ascaphus montanus ) that were collected during those same electrofishing surveys for fishes from 241 stream reaches. Tailed frogs occupy small, cold streams and have several life-history traits that make them sensitive to environmental change. We used a Bayesian framework to estimate occupancy, colonization, and extinction dynamics relative to forest canopy, estimated stream temperature, and wildfire effects. Tailed frog occupancy decreased by 19 % from 1993 to 1995 to 2011–2013. Changes in occupancy were linked with increased extinction and reduced colonization where there were fire-driven reductions in canopy cover, and reduced colonization of stream reaches that warmed on average 0.8 °C during the study. Our results highlight extensive extirpations for oft-overlooked species and emphasize the importance of including species with diverse habitat requirements and life histories in conservation planning.

Idaho, Montana↗
USGS2024

Landscape-scale population trends in the occurrence and abundance of wildlife populations using long term camera-trapping data

Accurate estimation and monitoring of wildlife population trends is foundational to evidence-based conservation. Here, we use hierarchical modelling to estimate population trends for six species of management interest (coyotes; red foxes , white-tailed deer , gray foxes; eastern wild turkey , and bobcats) while accounting for observation error from a long-term camera trap survey conducted across the State of New York. We were able to detect population level trends in occurrence and abundance and produce spatially explicit predictions for all six species using a combination of single-species occupancy models and Royle-Nichols models. Coyote (mean λ = 1.22, 95 % CI = 0.85–1.82) and red fox (mean λ = 1.17, 95 % CI = 0.95–1.46) populations were widely distributed with stable populations across the sampling period from 2014 to 2021. White-tailed deer populations were highly abundant and displayed an increasing population trend (mean λ = 1.85, 95 % CI = 1.54–2.10). Eastern wild turkey occupancy remained low across the state despite displaying a slight increase in occupancy over the sampling period (mean ψ = 0.16, 95 % CI = 0.07–0.25). Gray fox occupancy was also low (mean ψ = 0.22, 95 % CI = 0.12–0.29), consistent with growing concerns over the species across North America. Despite recent recoveries elsewhere, bobcat populations in New York State displayed very low occupancy (mean ψ = 0.07, 95 % CI = 0.02–0.12), highlighting the necessity of monitoring to inform conservation action. We provide empirically supported management implications for each species and demonstrate the efficacy of long-term camera trapping to provide robust evidence on population trends while accounting for imperfect detections, over scales meaningful to species management and conservation.

Biological Conservation↗
USGS2015

Looking beyond rare species as umbrella species: Northern Bobwhites ( Colinus virginianus ) and conservation of grassland and shrubland birds

Changes in land use and land cover throughout the eastern half of North America have caused substantial declines in populations of birds that rely on grassland and shrubland vegetation types, including socially and economically important game birds such as the Northern Bobwhite ( Colinus virginianus ; hereafter bobwhites). As much attention is focused on habitat management and restoration for bobwhites, they may act as an umbrella species for other bird species with similar habitat requirements. We quantified the relationship of bobwhites to the overall bird community and evaluated the potential for bobwhites to act as an umbrella species for grassland and shrubland birds. We monitored bobwhite presence and bird community composition within 31 sample units on selected private lands in the south-central United States from 2009 to 2011. Bobwhites were strongly associated with other grassland and shrubland birds and were a significant positive predictor for 9 species. Seven of these, including Bell's Vireo ( Vireo bell ), Dicksissel ( Spiza americana ), and Grasshopper Sparrow ( Ammodramus savannarum ), are listed as species of conservation concern. Species richness and occupancy probability of grassland and shrubland birds were higher relative to the overall bird community in sample units occupied by bobwhites. Our results show that bobwhites can act as an umbrella species for grassland and shrubland birds, although the specific species in any given situation will depend on region and management objectives. These results suggest that efficiency in conservation funding can be increased by using public interest in popular game species to leverage resources to meet multiple conservation objectives.

Biological Conservation↗
USGS2018

Ecological neighborhoods as a framework for umbrella species selection

Umbrella species are typically chosen because they are expected to confer protection for other species assumed to have similar ecological requirements. Despite its popularity and substantial history, the value of the umbrella species concept has come into question because umbrella species chosen using heuristic methods, such as body or home range size, are not acting as adequate proxies for the metrics of interest: species richness or population abundance in a multi-species community for which protection is sought. How species associate with habitat across ecological scales has important implications for understanding population size and species richness, and therefore may be a better proxy for choosing an umbrella species. We determined the spatial scales of ecological neighborhoods important for predicting abundance of 8 potential umbrella species breeding in Nebraska using Bayesian latent indicator scale selection in N-mixture models accounting for imperfect detection. We compare the conservation value measured as collective avian abundance under different umbrella species selected following commonly used criteria and selected based on identifying spatial land cover characteristics within ecological neighborhoods that maximize collective abundance. Using traditional criteria to select an umbrella species resulted in sub-maximal expected collective abundance in 86% of cases compared to selecting an umbrella species based on land cover characteristics that maximized collective abundance directly. We conclude that directly assessing the expected quantitative outcomes, rather than ecological proxies, is likely the most efficient method to maximize the potential for conservation success under the umbrella species concept.

Biological Conservation↗
USGS2023

Predicted connectivity pathways between grizzly bear ecosystems in western Montana

Habitat and corridor mapping are key components of many conservation programs. Grizzly bear populations in the continental US are fragmented and connectivity among federal recovery areas is a conservation goal. Building on recent work, we modeled movements to predict areas of connectivity, using integrated step selection functions (iSSFs) developed from GPS-collared grizzly bears (F = 46, M = 19) in the Northern Continental Divide Ecosystem (NCDE). We applied iSSFs in a >300,000 km 2 area including the NCDE, Cabinet–Yaak (CYE), Bitterroot (BE), and Greater Yellowstone (GYE) Ecosystems. First, we simulated directed movements (randomized shortest paths with 3 levels of exploration) between start and end nodes across populations. Second, we simulated undirected movements from start nodes in the NCDE, CYE, or GYE (no predetermined end nodes). We summarized and binned results as classes 1 (lowest relative predicted use) – 10 (highest relative predicted use) and evaluated predictions using 127 outlier grizzly bear locations. Connectivity pathways were primarily associated with mountainous areas and secondarily with river and stream courses in open valleys. Values at outlier locations indicated good model fit and mean classes at outlier locations (≥7.4) and Spearman rank correlations (≥0.87) were highest for undirected simulations and directed simulations with the highest level of exploration. Our resulting predictive maps can facilitate on-the-ground application of this research for prioritizing habitat conservation, human-bear conflict mitigation, and transportation planning. Additionally, our overall modeling approach has utility for myriad species and conservation applications.

Montana↗