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At least 163 records · Page 9Linked to original sources

USGS2005

Pathways of food uptake in native (Unionidae) and introduced (Corbiculidae and Dreissenidae) freshwater bivalves

Nineteen species of adult freshwater bivalves were able to use water currents generated from within the mantle cavity to move non-suspended algae into the shell through non-siphon areas such as the anterior shell valve edge and the mid-ventral point of the shell. This was in addition to, and not in replacement of, uptake of planktonic algae through the inhalant siphon. Algae obtained from both the non-inhalant siphon areas and the inhalant siphon were equally captured and transferred to the stomach. Pseudofecal release was also more complex than typically stated. Pseudofeces were released from the inhalant siphon (as expected), plus from the anterior shell margin, and at the mid-point along the ventral shell edge (non-dreissenids). Pseudofeces that settled near the ventral shell margin was accessible for future uptake back into the mantle cavity. There were no species or body size differences in ability to capture food from non-planktonic sources. The extent to which natural populations utilize benthic food resources remains to be determined. However, our study demonstrates that bivalve communities are very adaptable in accessing a variety of food resources from both suspended material in the water column, as well as organic material from the sediments.

Journal of Great Lakes Research↗

USGS2013

Influence of dissolved organic matter character on mercury incorporation by planktonic organisms: an experimental study using oligotrophic water from Patagonian lakes

Ligands present in dissolved organic matter (DOM) form complexes with inorganic divalent mercury (Hg 2+ ) affecting its bioavailability in pelagic food webs. This investigation addresses the influence of a natural gradient of DOM present in Patagonian lakes on the bioaccumulation of Hg 2+ (the prevailing mercury species in the water column of these lakes) by the algae Cryptomonas erosa and the zooplankters Brachionus calyciflorus and Boeckella antiqua. Hg 2+ accumulation was studied through laboratory experiments using natural water of four oligotrophic Patagonian lakes amended with 197 Hg 2+ . The bioavailability of Hg 2+ was affected by the concentration and character of DOM. The entrance of Hg 2+ into pelagic food webs occurs mostly through passive and active accumulation. The incorporation of Hg 2+ by Cryptomonas, up to 27% of the Hg 2+ amended, was found to be rapid and dominated by passive adsorption, and was greatest when low molecular weight compounds with protein-like or small phenolic signatures prevailed in the DOM. Conversely, high molecular weight compounds with a humic or fulvic signature kept Hg 2+ in the dissolved phase, resulting in the lowest Hg 2+ accumulation in this algae. In Brachionus and Boeckella the direct incorporation of Hg from the aqueous phase was up to 3% of the Hg 2+ amended. The dietary incorporation of Hg 2+ by Boeckella exceeded the direct absorption of this metal in natural water, and was remarkably similar to the Hg 2+ adsorbed in their prey. Overall, DOM concentration and character affected the adsorption of Hg 2+ by algae through competitive binding, while the incorporation of Hg 2+ into the zooplankton was dominated by trophic or dietary transfer.

Patagonia↗

USGS2007

Identifying sources of nitrogen to Hanalei Bay, Kauai, utilizing the nitrogen isotope signature of macroalgae

Sewage effluent, storm runoff, discharge from polluted rivers, and inputs of groundwater have all been suggested as potential sources of land derived nutrients into Hanalei Bay, Kauai. We determined the nitrogen isotopic signatures (δ 15 N) of different nitrate sources to Hanalei Bay along with the isotopic signature recorded by 11 species of macroalgal collected in the Bay. The macroalgae integrate the isotopic signatures of the nitrate sources over time, thus these data along with the nitrate to dissolved inorganic phosphate molar ratios (N:P) of the macroalgae were used to determine the major nitrate source to the bay ecosystem and which of the macro-nutrients is limiting algae growth, respectively. Relatively low δ 15 N values (average −0.5‰) were observed in all algae collected throughout the Bay; implicating fertilizer, rather than domestic sewage, as an important external source of nitrogen to the coastal water around Hanalei. The N:P ratio in the algae compared to the ratio in the Bay waters imply that the Hanalei Bay coastal ecosystem is nitrogen limited and thus, increased nitrogen input may potentially impact this coastal ecosystem and specifically the coral reefs in the Bay. Identifying the major source of nutrient loading to the Bay is important for risk assessment and potential remediation plans.

Hawaii↗

USGS2000

Relations of habitat-specific algal assemblages to land use and water chemistry in the Willamette Basin, Oregon

Benthic algal assemblages, water chemistry, and habitat were characterized at 25 stream sites in the Willamette Basin, Oregon, during low flow in 1994. Seventy-three algal samples yielded 420 taxa - Mostly diatoms, blue-green algae, and green algae. Algal assemblages from depositional samples were strongly dominated by diatoms (76% mean relative abundance), whereas erosional samples were dominated by blue-green algae (68% mean relative abundance). Canonical correspondence analysis (CCA) of semiquantitative and qualitative (presence/absence) data sets identified four environmental variables (maximum specific conductance, % open canopy, pH, and drainage area) that were significant in describing patterns of algal taxa among sites. Based on CCA, four groups of sites were identified: Streams in forested basins that supported oligotrophic taxa, such as Diatoma mesodon; small streams in agricultural and urban basins that contained a variety of eutrophic and nitrogen-heterotrophic algal taxa; larger rivers draining areas of mixed land use that supported planktonic, eutrophic, and nitrogen-heterotrophic algal taxa; and streams with severely degraded or absent riparian vegetation (> 75% open canopy) that were dominated by other planktonic, eutrophic, and nitrogen-heterotrophic algal taxa. Patterns in water chemistry were consistent with the algal autecological interpretations and clearly demonstrated relationships between land use, water quality, and algal distribution patterns.

Conference Paper↗

USGS2003

Biochemical composition of three algal species proposed as food for captive freshwater mussels

To identify potential diets for rearing captive freshwater mussels, the protein, carbohydrate (CHO), and lipid contents of two green algae, Neochloris oleoabundans, Bracteacoccus grandis, and one diatom, Phaeodactylum tricornutum, were compared at different growth stages. The fatty acid and sterol composition were also identified. Protein was greatest (55-70%) for all species at late log growth stage (LL), and declined in late stationary (LS) growth. CHO was greatest at LS stage for all species (33.9-56.4% dry wt). No significant change in lipid levels occurred with growth stage, but tended to increase in N. oleoabundans. Mean lipid content differed significantly in the order: N. oleoabundans > P. tricornutum > B. grandis. Total fatty acids (TFA) were higher at LS stage compared to other stages in the two green algae, and stationary stage in the diatom. Mean unsaturated fatty acids (UFA) as %TFA was significantly higher in N. oleoabundans than the other species. The green algae contained high percentages of C-18 polyunsaturated fatty acids (PUFAs), while the diatom was abundant in C-16 saturated and mono-unsaturated fatty acids and C-20 PUFA fatty acids. Growth stage had no effect on sterol concentration of any species. B. grandis showed significantly higher sterol levels than the other species except P. tricornutum at S stage. B. grandis was characterized by predominantly ??5, C-29 sterols, while N. oleoabundans synthesized ??5,7, ??5,7,22, and ??7, C-28 sterols. P. tricornutum produced primarily a ??5,22, C-28 sterol, and a small amount of a ??7,22, C-28 sterol.

Journal of Applied Phycology↗

USGS2024

Macroscale controls determine the recovery of river ecosystem productivity following flood disturbances

River ecosystems rely on varied flows, including regular floods, to provide food and habitat for aquatic organisms. However, flows of freshwater are becoming increasingly managed for irrigation, industry, and other human activities, and the frequency of floods is changing. Our study used time-series data of photosynthesis from 143 rivers across the United States and developed a modeling framework to examine how algae, the base of most riverine food webs, recovered following scouring disturbance during floods. We found that algae in wider rivers recovered more quickly following disturbance (e.g., removal from the bottom) but that the flow thresholds at which algae is disturbed are likely more strongly influenced by site-specific characteristics.

Proceedings of the National Academy of Sciences↗

USGS2017

Lichens and microfungi in biocrusts: Structure and function now and in the future

Biological soil crusts (biocrusts) are formed by soil-surface communities of biota that live within, or immediately on top of, the uppermost millimeters of soil. They consist of cyanobacteria, algae, mosses, microfungi, and lichenized fungi (hereafter, lichens). Cyanobacterial and microfungal filaments, rhizinae and rhizomorphs of lichens, and rhizinae and protonemata of bryophytes weave throughout the top few millimeters of soil, gluing loose soil particles together (Fig. 1). The intimate association between soil particles and organisms forms a coherent crust. A quantitative estimate of global biological crust cover is difficult to obtain and not yet available, but the worldwide coverage of the terrestrial surface by biocrusts is very high. In arid and semiarid areas, biocrusts may constitute up to or more than 70% of the living cover and dryland (hyper-arid, arid, semi-arid, and polar deserts) ecosystems, where they often dominate, cover ~40% of the terrestrial land mass (Pointing and Belnap 2014). Lichens and microfungi are an essential and often dominant part of biocrusts. About one fifth (19 %) of all known species of fungi are lichenized; that is, they form a stable symbiotic association with green algal or/and cyanobacterial photobionts that provide nutrients for the mycobiont (fungi). The vast majority of lichenized fungi belong to the Ascomycota, with 42% of all fungi in this group forming lichens (Kirk et al., 2001). About 85% of lichen-forming fungi are symbiotic with Chlorophyta (green algae, creating "chlorolichens), approximately 10% with Cyanophyta, (creating "cyanolichens"), and the remainder are associated simultaneously with both groups. About 40 genera of photobionts have been identified in lichens: 25 are green algae and 15 are cyanobacteria. The autotrophic lifestyle of lichens requires an exposure of the green thallus to light. Most lichens are long-lived organisms with high habitat specificity. They are especially ecologically successful in dryland areas where competition with phanerogamous vegetation is reduced. It is estimated that approximately 8% of the earth's terrestrial surface has lichens as its most dominant life-form (Ahmadjian 1995). One of their most important habitats are biocrusts, which lichens often dominate. In the present Chapter we concentrate on those widely distributed biocrusts in which free-living and lichenized fungi play a dominating role. We describe their community structure, analyze the special properties and functions of these organisms as key members of biocrusts, and then discuss the function of the fungi-rich biocrusts as components of larger ecosystems and landscapes (for details and specific literature, see Belnap and Lange 2003).

Book chapter↗

USGS2003

An evaluation of selective feeding by three age-groups of the rainbow mussel Villosa iris

A tri-algal diet was fed to three age-groups of the rainbow mussel Villosa iris: ages 2-3 d, 50-53 d, and 3-6 years. Changes in the relative abundance of each algal species were determined in 5-h feeding trials from feeding chambers and by gut content analyses. All age-groups rejected Scenedesmus quadricauda and preferentially selected Nannochloropsis oculata and Selenastrum capricornutum, principally on the basis of size. Changes in the relative abundance of algae in feeding chambers did not differ significantly among age-groups. Observed differences in the ingested quantities of the similar-sized N. oculata and S. capricornutum were attributed to other particle-related characteristics. Results indicate that the rainbow mussel can be fed similar-sized algae at ali ages in captive propagation facilities. When developing a suitable algal diet for rearing juvenile mussels, one probably need not investigate different species at each stage of development if the algae used are in the 2.8-8.5-??m size range.

North American Journal of Aquaculture↗

USGS2002

What happens to nutrients in offstream reservoirs in the lower South Platte River basin?

The practice of storing South Platte River water in offstream reservoirs reduces nutrient concentrations but also contributes to the growth of algae, which may adversely affect the recreational use of the reservoirs. Results of a study of five offstream reservoirs in the lower South Platte River Basin during the 1995 irrigation season showed that the reservoirs trapped 20 to 88 percent of incoming nitrogen and phosphorus, except for phosphorus in one reservoir. Total nitrogen concentrations in the reservoirs were highest in March and decreased through September, largely as a result of uptake by algae and other aquatic life for growth. Total phosphorus concentrations in the reservoirs were more variable because of the recycling of phosphorus by aquatic life. Chlorophyll-a concentrations indicated that the amount of algae in all reservoirs increased during the summer and that all reservoirs were eutrophic. This study was done by the U.S. Geological Survey as part of the National Water-Quality Assessment (NAWQA) Program.

Fact Sheet↗

USGS2008

Monitoring indicators of harmful cyanobacteria in Texas

Harmful algal blooms can occur when certain types of microscopic algae grow quickly in water, forming visible patches that might harm the health of the environment, plants, or animals. In freshwater, species of Cyanobacteria (also known as bluegreen algae) are the dominant group of harmful, bloom-forming algae. When Cyanobacteria form a harmful algal bloom, potential impairments include restricted recreational activities because of algal scums or algal mats, potential loss of public water supply because of taste and odor compounds (for example, geosmin), and the production of toxins (for example, microcystin) in amounts capable of threatening human health and wildlife.

Fact Sheet↗

USGS2013

Review of revised Klamath River Total Maximum Daily Load models from Link River Dam to Keno Dam, Oregon

Flow and water-quality models are being used to support the development of Total Maximum Daily Load (TMDL) plans for the Klamath River downstream of Upper Klamath Lake (UKL) in south-central Oregon. For riverine reaches, the RMA-2 and RMA-11 models were used, whereas the CE-QUAL-W2 model was used to simulate pooled reaches. The U.S. Geological Survey (USGS) was asked to review the most upstream of these models, from Link River Dam at the outlet of UKL downstream through the first pooled reach of the Klamath River from Lake Ewauna to Keno Dam. Previous versions of these models were reviewed in 2009 by USGS. Since that time, important revisions were made to correct several problems and address other issues. This review documents an assessment of the revised models, with emphasis on the model revisions and any remaining issues. The primary focus of this review is the 19.7-mile Lake Ewauna to Keno Dam reach of the Klamath River that was simulated with the CE-QUAL-W2 model. Water spends far more time in the Lake Ewauna to Keno Dam reach than in the 1-mile Link River reach that connects UKL to the Klamath River, and most of the critical reactions affecting water quality upstream of Keno Dam occur in that pooled reach. This model review includes assessments of years 2000 and 2002 current conditions scenarios, which were used to calibrate the model, as well as a natural conditions scenario that was used as the reference condition for the TMDL and was based on the 2000 flow conditions. The natural conditions scenario included the removal of Keno Dam, restoration of the Keno reef (a shallow spot that was removed when the dam was built), removal of all point-source inputs, and derivation of upstream boundary water-quality inputs from a previously developed UKL TMDL model. This review examined the details of the models, including model algorithms, parameter values, and boundary conditions; the review did not assess the draft Klamath River TMDL or the TMDL allocations. Attention to the details of a model is one of the best ways to identify potential problems, correct them if possible, and begin to assess the magnitude of potential model errors and uncertainty. Model users need to determine the level of acceptable uncertainty associated with their objectives, identify all sources of potential uncertainty (model uncertainty, data uncertainty, etc.), and assess their approach and results accordingly. In the draft Klamath River TMDL, the Oregon Department of Environmental Quality identified the upstream boundary conditions as the largest source of uncertainty for both the current and natural conditions scenarios, not the model algorithms or choice of model parameters. We agree that the upstream boundary conditions are one of the largest, if not the largest, source of model uncertainty; therefore, the derivation of upstream boundary conditions may be more important to the TMDL than some other model-related issues identified in this review. The revised models contain a number of changes, some of which were done to solve small problems and are largely inconsequential to model results, but others of which are important and affect model predictions of instream concentrations. A consistent version of the model is now applied to all scenarios, and an error in the source code was corrected that had inadvertently discarded 20 percent of the incoming solar radiation in the original model. The baseline light-extinction coefficient for water was decreased and set to a consistent and defensible value across all models of reservoir reaches. Inconsistencies among the values of certain parameters in the original models, such as the ammonia nitrification rate and the decomposition rates of organic matter, have been eliminated, although the reasoning behind the final selections was not documented. The dependence of the rate of sediment oxygen demand (SOD) on temperature was modified such that the SOD rate was substantially decreased at temperatures less than 20°C, causing the model to predict higher dissolved oxygen (DO) concentrations in spring, autumn, and winter. Although that change to the temperature dependence function was done to make the function more similar to the model’s default, this change was not accompanied by any documentation of recalibration or sensitivity exercises. The maximum SOD rate for the 2002 current conditions scenario was decreased from 3.0 grams per square meter per day (g/m 2 /d) in the original model to 2.0 g/m 2 /d in the revised model, a considerable adjustment that appears to have been needed to offset effects of a change to another variable (O2LIM) that would have resulted in a substantial increase in the effective SOD rate for 2002. A 50-percent decrease in the SOD rate over a 2-year period, however, is not likely to be mirrored by field measurements, so this change may be compensating for some process that is not represented correctly in the DO budget for the current conditions scenarios. Several important changes were made to the natural conditions scenario. First, the elevation of the Keno reef was corrected; the elevation specified in the original model was 1 foot too high, which affected the volume of the pooled reach and the travel time through it. The most important changes to this scenario were to the upstream boundary inputs of organic matter and algae, which affect incoming fluxes of nitrogen and phosphorus. Algal biomass inputs were increased by approximately 60 percent during summer because of a change in the way those inputs were derived from results of the UKL TMDL model. Non-algal organic matter inputs were decreased, particularly in summer to correct a problem attributed to double-counting of phosphorus in the original inputs. The distribution of non-algal organic matter was changed from 20 percent dissolved in the original model to 90 percent dissolved in the revised model in response to review comments and published data. The overall sum of algal biomass and non-living organic matter was decreased, which resulted in lower inputs of total phosphorus and nitrogen. Total phosphorus inputs were less than 0.03 mg/L, and although the inputs were derived from selected results of the UKL TMDL model, these concentrations seem too low to be representative of a historically eutrophic system surrounded by extensive wetlands, peat soils, and a groundwater system high in phosphorus. The draft TMDL states that the upstream boundary conditions are the greatest source of uncertainty, greater than any uncertainty associated with the models. Efforts to improve existing models of algal growth and nutrient cycling in UKL, therefore, would provide a substantial benefit to downstream modeling efforts on the Klamath River. Although many improvements were made in revising the Klamath River TMDL models, some issues and uncertainties remain. Several errors in the model source code remain, but do not affect model results for this application as long as certain options and rates are not changed; future users of these models should be aware of these issues. Although the distribution of dissolved and particulate organic matter was modified for the natural conditions scenario, that distribution was not changed for the current conditions scenarios. Recent data on that distribution and the likely rates of organic matter decomposition could be used to improve these models in the future. Nitrate predictions at Keno (Highway 66) still are too high for the current conditions scenarios; future efforts should re-evaluate the model’s denitrification rates and the release rate of ammonia from anoxic sediments. Possibly the most important of the remaining issues are tied to the two-state (healthy/unhealthy) hypothesis for the algae population that was coded into the model. Some of the rates and conversion functions could be refined to make them more acceptable; currently, the published literature does not support the concept of moderately low dissolved-oxygen concentrations as a stressor of algae in the ranges used by the model. More research is needed before these algorithms can be truly tested. The algorithms currently appear to help the model fit the patterns in the available data, and that is useful and perhaps sufficient for some purposes, but those algorithms are not truly predictive or reliable for certain purposes until they can be tested through well-designed experiments and research. In summary, the TMDL models used to simulate Link and Klamath Rivers from Link River Dam to Keno Dam were revised to fix several problems and address various issues. The resulting models are an improvement over those that were reviewed by USGS in 2009, and represent a useful advance in the simulation of a complex system that is difficult to model. However, several issues remain that cause increased uncertainty in the model results. Depending on the objectives of the modeling, now or in the future, these remaining issues could be more or less important. For the Klamath River TMDL, the upstream boundary conditions may be a larger source of uncertainty than the concerns with model algorithms and model parameters identified in this review. Efforts to re-evaluate the available models of algal growth and nutrient cycling in UKL would be highly beneficial to downstream modeling efforts in the Klamath River.

Oregon;California↗

USGS2015

Field and laboratory guide to freshwater cyanobacteria harmful algal blooms for Native American and Alaska Native communities

Cyanobacteria can produce toxins and form harmful algal blooms. The Native American and Alaska Native communities that are dependent on subsistence fishing have an increased risk of exposure to these cyanotoxins. It is important to recognize the presence of an algal bloom in a waterbody and to distinguish a potentially toxic harmful algal bloom from a non-toxic bloom. This guide provides field images that show cyanobacteria blooms, some of which can be toxin producers, as well as other non-toxic algae blooms and floating plants that might be confused with algae. After recognition of a potential toxin-producing cyanobacterial bloom in the field, the type(s) of cyanobacteria present needs to be identified. Species identification, which requires microscopic examination, may help distinguish a toxin-producer from a non-toxin producer. This guide also provides microscopic images of the common cyanobacteria that are known to produce toxins, as well as images of algae that form blooms but do not produce toxins.

Open-File Report↗

USGS2020

Kelp forest monitoring at Naval Base Ventura County, San Nicolas Island, California: Fall 2018 and Spring 2019, fifth annual report

Introduction Kelp forests and rocky reefs are among the most recognized marine ecosystems and provide the primary habitat for several species of fishes, invertebrates, and algal assemblages (Stephens and others, 2006). In addition, kelp forests have been shown to be important carbon dioxide sinks (Wilmers and others, 2012) and are an important source of nearshore marine primary production (Duggins and others, 1989). These highly dynamic ecosystems are extremely variable, and both top-down and bottom-up ecological controls drive this rich trophic environment. Giant kelp ( Macrocystis pyrifera ) forests and the species that inhabit these ecosystems are influenced by several environmental conditions, such as wave exposure, water temperature, water clarity, bottom depth and composition, species composition, and the density of kelp and other algal assemblages (Schiel and Foster, 2015). However, in addition to “normal” variability, kelp forests can undergo extreme regime shifts from kelp canopy forested areas to barrens characterized by high densities of urchins and encrusting coralline algae (Harrold and Reed, 1985). San Nicolas Island (SNI), outermost of the California Channel Islands, is home to a diverse group of terrestrial and marine organisms and includes kelp bed and rocky reef habitats ( fig. 1 ). The SNI kelp forests not only provide food and shelter for fishes and invertebrates within the habitat, but also they support higher trophic level consumers such as marine birds and several marine mammal species including the southern sea otter ( Enhydra lutris nereis) , a major predator on sea urchins and other marine invertebrates. Owing to concern about the vulnerability of the California population, the U.S. Fish and Wildlife Service (USFWS) translocated 140 southern sea otters from the central California coast to SNI between 1987 and 1990. Although only approximately 14 translocated otters are thought to have remained at SNI (U.S. Fish and Wildlife Service, 2012), their population at the island has increased and is currently greater than 120 individuals (Hatfield and others, 2019). Sea otters are a natural part of the kelp forest ecosystem, but their presence has implications for community dynamics as they repopulate a region from which they were extirpated in the 19th century. At SNI, sea otters have been concentrated mostly around the west end of the island, with some use of the south side and very little, but expanding, use of the northeast side. An ecosystem shift from urchin dominated to kelp dominated, that occurred at a site at the west end of the island in the early 2000s, though initiated by sea urchin disease, was likely facilitated to some degree by sea otter foraging (Kenner and Tinker, 2018). These ecosystems also are the target of many fisheries, including urchin and lobster. Urchin fisheries, which target the larger red sea urchin, may release the smaller but more mobile purple sea urchin from competitive control (Dayton and others, 1998). Lobster fisheries may release purple sea urchins from predatory control (Lafferty, 2004). Owing to the distance from the mainland, however, SNI kelp forests and reefs have been somewhat protected from the degree of harvest and other anthropogenic impacts experienced by the southern California mainland. Invasive species are another issue, and there are a few invasive subtidal macroalgae of concern in southern California waters. Although the brown alga Sargassum muticum has been established at the island for decades, S. horneri has only recently been seen at SNI and, so far, the invasive kelp Undaria pinnatifida and the green alga Caulerpa taxifolia have not been observed there. Sargassum horneri , in particular, has demonstrated a capability to outcompete native kelps at some of the other Channel Islands but it is unclear what indirect effects it may have on community structure (Marks and others, 2015). Because the surrounding kelp forests fall within the management boundary of the SNI Integrated Natural Resources Management Plan (INRMP; U.S. Navy, 2015), USGS works with the Navy to provide surveys of this ecologically important ecosystem that inform natural resource managers of trends in the population abundance of particular species. In addition, long-term surveys allow for an understanding of potential changes in species diversity and community composition as a result of trophic or other interactions. The U.S. Geological Survey (USGS) implemented a kelp forest monitoring program for the U.S. Navy at San Nicolas Island in 2014, building on sites and methods established by USFWS scientists in 1980 ( appendix 1 ). This report focuses on data collected during sampling expeditions to these sites in fall 2018 (October 2–5) and spring 2019 (April 3–6). Together they will be herein referred to as year 5 because, although the trips were made in different calendar years, they were approximately 6 months apart and were conducted under the fifth year of this contract. The previous sampling year (fall 2017 and spring 2018) is referred to as year 4. The year 5 data are compared with data collected during eight trips from fall 2014 through spring 2018. Differences in counts between these expeditions can result from seasonal factors, stochastic variation, or sampling error, but temporal comparison can reveal population trends. Where appropriate, long-term data collected during the 33 years prior to the implementation of these slightly revised protocols will be presented in order to lend some context to the observations reported here. Genus and species names used in this report are those currently recognized as valid in the Integrated Taxonomic Information System (ITIS.gov). Upon first use, the name recognized as valid by the World Register of Marine Species (WoRMS; marinespecies.org) is shown in brackets if different. The exception is Sargassum horneri which does not show up in any discernable form in ITIS.gov.

California↗

USGS1974

Limnological data from selected lakes in the San Francisco Bay region, California

Limnological data were compiled on 21 lakes in the San Francisco Bay area. The data were obtained from regulating agencies and from recent surveys made by the U.S. Geological Survey. The history of each lake and of its respective regulating agency is presented, along with methods used for data collection and analyses. The largest reservoir, Lake Berryessa, has a volume of 1,600,000 acre-ft (1,975 hm 3 ), with a drainage. area of 576 mi 2 (1,490 km 2 ). Pilarcitos Lake is one of the smallest reservoirs, with a volume of 3,100 acre-ft (3. 8 hm 3 ) and a drainage area of 3. 80 mi 2 (9.84km 2 ). Eleven of the 21 reservoirs are open to the public for recreation. The most intensive shoreline development and use is at Lake Berryessa and Lake Merced. All but three of the 21 reservoirs (not including Upper Crystal Springs Reservoir) were thermally stratified during the summer. Eight of the reservoirs showed evidence of dissolvedoxygen depletion during the summer. Lafayette Reservoir and Loch Lomond are mechanically aerated in order to increase the dissolved-oxygen concentration and lower the surface water temperature. The lake waters ranged from the hard (320 mg/1 CaC0 3 ) of Calero Reservoir, to the soft (27 mg/1 CaC0 3 ) of Upper Crystal Springs Reservoir. Drainage from abandoned mercury mines in Santa Clara County has resulted in mercury concentrations in Calero and Lexington Reservoir fish which exceed U.S. Food and Drug limitations (0.5 μ /g) for acceptability of mercury in fish used for human food. In Loch Lomond, four major production periods of the blue-green algae, Anabaena sp . , occurred from May to October, 1967-69. Blue-green algae were the most numerous algae in Lake Del Valle from March through July 1971, with 5,400 blue-green algal organisms per millilitre collected in April.

California↗

USGS2004

The effects of urbanization on the biological, physical, and chemical characteristics of coastal New England streams

During August 2000, responses of biological communities (invertebrates, fish, and algae), physical habitat, and water chemistry to urban intensity were compared among 30 streams within 80 miles of Boston, Massachusetts. Sites chosen for sampling represented a gradient of the intensity of urban development (urban intensity) among drainage basins that had minimal natural variability. In this study, spatial differences were used as surrogates for temporal changes to represent the effects of urbanization over time. The degree of urban intensity for each drainage basin was characterized with a standardized urban index (0-100, lowest to highest) derived from land cover, infrastructure, and socioeconomic variables. Multivariate and multimetric analyses were used to compare urban index values with biological, physical, and chemical data to determine how the data indicated responses to urbanization. Multivariate ordinations were derived for the invertebrate-, fish-, and algae-community data by use of correspondence analysis, and ordinations were derived for the chemical and physical data by use of principal-component analysis. Site scores from each of the ordinations were plotted in relation to the urban index to test for a response. In all cases, the primary axis scores showed the strongest response to the urban index, indicating that urbanization was a primary factor affecting the data ordination. For the multimetric analyses, each of the biological data sets was used to calculate a series of community metrics. For the sets of chemical and physical data, the individual variables and various combinations of individual variables were used as measured and derived metrics, respectively. Metrics that were generally most responsive to the urban index for each data set included: EPT (Ephemeroptera, Plecoptera, Trichoptera) taxa for invertebrates; cyprinid taxa for fish; diatom taxa for algae; bicarbonate, conductivity, and nitrogen for chemistry; and water depth and temperature for physical habitat. The slopes of the responses generally were higher between the urban index values of 0 to 35, indicating that the greatest change in aquatic health may occur between low and moderate levels of urban intensity. Additionally, many of the responses showed that at urban index values greater than 35, there was a threshold effect where the response variable no longer changed with respect to urban intensity. Recognizing and understanding this type of response is important in management and monitoring programs that rely on decisive interpretations of variable responses. Any biological, physical, or chemical variable that is used to characterize stream health over a gradient of disturbance would not be a reliable indicator when a level of disturbance is reached where the variable does not respond in a predictable manner.

Maine, Massachusetts, New Hampshire↗

USGS2005

Modeling hydrodynamics, temperature, and water quality in Henry Hagg Lake, Oregon, 2000-03

The two-dimensional model CE-QUAL-W2 was used to simulate hydrodynamics, temperature, and water quality in Henry Hagg Lake, Oregon, for the years 2000 through 2003. Input data included lake bathymetry, meteorologic conditions, tributary inflows, tributary temperature and water quality, and lake outflows. Calibrated constituents included lake hydrodynamics, water temperature, orthophosphate, total phosphorus, ammonia, algae, chlorophyll a, zooplankton, and dissolved oxygen. Other simulated constituents included nitrate, dissolved and particulate organic matter, dissolved solids, and suspended sediment. Two algal groups (blue-green algae, and all other algae) were included in the model to simulate the lake’s algal communities. Measured lake stage data were used to calibrate the lake's water balance; calibration of water temperature and water quality relied upon vertical profile data taken in the deepest part of the lake near the dam. The model initially was calibrated with data from 2000-01 and tested with data from 2002-03. Sensitivity tests were performed to examine the response of the model to specific parameters and coefficients, including the light-extinction coefficient, wind speed, tributary inflows of phosphorus, nitrogen and organic matter, sediment oxygen demand, algal growth rates, and zooplankton feeding preference factors.

Oregon↗

USGS2005

Water-quality, phytoplankton, and trophic-status characteristics of Big Base and Little Base lakes, Little Rock Air Force Base, Arkansas, 2003-2004

Little Rock Air Force Base is the largest C-130 base in the Air Force and is the only C-130 training base in the Department of Defense. Little Rock Air Force Base is located in central Arkansas near the eastern edge of the Ouachita Mountains, near the Mississippi Alluvial Plain, and within the Arkansas Valley Ecoregion. Habitats include upland pine forests, upland deciduous forest, broad-leaved deciduous swamps, and two small freshwater lakes?Big Base Lake and Little Base Lake. Big Base and Little Base Lakes are used primarily for recreational fishing by base personnel and the civilian public. Under normal (rainfall) conditions, Big Base Lake has a surface area of approximately 39 acres while surface area of Little Base Lake is approximately 1 acre. Little Rock Air Force Base personnel are responsible for managing the fishery in these two lakes and since 1999 have started a nutrient enhancement program that involves sporadically adding fertilizer to Big Base Lake. As a means of determining the relations between water quality and primary production, Little Rock Air Force Base personnel have a need for biological (phytoplankton density), chemical (dissolved-oxygen and nutrient concentrations), and physical (water temperature and light transparency) data. To address these monitoring needs, the U.S. Geological Survey in cooperation with Little Rock Air Force Base, conducted a study to collect and analyze biological, chemical, and physical data. The U.S. Geological Survey sampled water quality in Big Base Lake and Little Base Lake on nine occasions from July 2003 through June 2004. Because of the difference in size, two sampling sites were established on Big Base Lake, while only one site was established on Little Base Lake. Lake profile data for Big Base Lake indicate that low dissolved- oxygen concentrations in the hypolimnion probably constrain most fish species to the upper 5-6 feet of depth during the summer stratification period. Dissolved-oxygen concentrations in Big Base Lake below a depth of 6 feet generally were less than 3 milligrams per liter for summer months that were sampled in 2003 and 2004. Some evidence indicates that phosphorus was limiting primary production during the sampling period. Dissolved nitrogen constituents frequently were detected in water samples (indicating availability) but dissolved phosphorus constituents-orthophosphorus and dissolved phosphorus-were not detected in any samples collected at the two lakes. The absence of dissolved phosphorus constituents and presence of total phosphorus indicates that all phosphorus was bound to suspended material (sediment particles and living organisms). Nitrogen:phosphorus ratios on most sampling occasions tended to be slightly higher than 16:1, which can be interpreted as further indication that phosphorus could be limiting primary production to some extent. An alkalinity of 20 milligrams per liter of calcium carbonate or higher is recommended to optimize nutrient availability and buffering capacity in recreational fishing lakes and ponds. Median values for water samples collected at the three sites ranged from 12-13 milligrams per liter of calcium carbonate. Alkalinities ranged from 9-60 milligrams per liter of calcium carbonate, but 13 of 17 samples collected at the deepest site had alkalinities less than 20 milligrams per liter of calcium carbonate. Results of three trophic-state indices, and a general trophic classification, as well as abundant green algae and large growths of blue-green algae indicate that Big Base Lake may be eutrophic. Trophic-state index values calculated using total phosphorus, chlorophyll a, and Secchi disc measurements from both lakes generally exceeded criteria at which lakes are considered to be eutrophic. A second method of determining lake trophic status-the general trophic classification-categorized the three sampling sites as mesotrophic or eutrophic. Green algae were found to be in abundance throughout mos

Scientific Investigations Report↗

USGS2012

Algal community characteristics and response to nitrogen and phosphorus concentrations in streams in the Ozark Plateaus, Southern Missouri, 1993-95 and 2006-07

Nutrient and algae data were collected in the 1990s and 2000s by the U.S. Geological Survey for the National Water- Quality Assessment program in the Ozark Highlands, southern Missouri. These data were collected at sites of differing drainage area, land use, nutrient concentrations, and physiography. All samples were collected at sites with a riffle/pool structure and cobble/gravel bed material. A total of 60 samples from 45 sites were available for analyses to determine relations between nutrient concentrations and algal community structure in this region. This information can be used by the Missouri Department of Natural Resources to develop the State's nutrient criteria plan. Water samples collected for this study had total nitrogen concentrations ranging from 0.07 to 4.41 milligram per liter (mg/L) with a median of 0.26 mg/L, and total phosphorus concentrations ranging from 0.003 to 0.78 mg/L with a median of 0.007 mg/L. These nutrient concentrations were transformed into nutrient categories consisting of varying percentiles of data. Algal community data were entered into the U.S. Geological Survey's Algae Data Analysis System for the computation of more than 250 metrics. These metrics were correlated with nutrient categories, and four metrics with the strongest relation with the nutrient data were selected. These metrics were Organic Nitrogen Tolerance, Oxygen Tolerance, Bahls Pollution Class, and the Saprobien index with the 25th and 80th percentile nutrient categories. These data indicate that near the 80th percentile (Total Nitrogen = 0.84 mg/L, Total Phosphorus = 0.035 mg/L) the algae communities significantly changed from nitrogen-fixing species dominance to those species more tolerant of eutrophic conditions.

Missouri↗