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USGS2015

Increased land use by Chukchi Sea polar bears in relation to changing sea ice conditions

Recent observations suggest that polar bears ( Ursus maritimus ) are increasingly using land habitats in some parts of their range, where they have minimal access to their preferred prey, likely in response to loss of their sea ice habitat associated with climatic warming. We used location data from female polar bears fit with satellite radio collars to compare land use patterns in the Chukchi Sea between two periods (1986–1995 and 2008–2013) when substantial summer sea-ice loss occurred. In both time periods, polar bears predominantly occupied sea-ice, although land was used during the summer sea-ice retreat and during the winter for maternal denning. However, the proportion of bears on land for > 7 days between August and October increased between the two periods from 20.0% to 38.9%, and the average duration on land increased by 30 days. The majority of bears that used land in the summer and for denning came to Wrangel and Herald Islands (Russia), highlighting the importance of these northernmost land habitats to Chukchi Sea polar bears. Where bears summered and denned, and how long they spent there, was related to the timing and duration of sea ice retreat. Our results are consistent with other studies supporting increased land use as a common response of polar bears to sea-ice loss. Implications of increased land use for Chukchi Sea polar bears are unclear, because a recent study observed no change in body condition or reproductive indices between the two periods considered here. This result suggests that the ecology of this region may provide a degree of resilience to sea ice loss. However, projections of continued sea ice loss suggest that polar bears in the Chukchi Sea and other parts of the Arctic may increasingly use land habitats in the future, which has the potential to increase nutritional stress and human-polar bear interactions.

Chukchi Sea↗

USGS2021

Assessing recovery of spectacled eiders using a Bayesian decision analysis

Assessing species status and making classification decisions under the Endangered Species Act is a critical step towards effective species conservation. However, classification decisions are liable to two errors: i) failing to classify a species as threatened or endangered that should be classified (underprotection), or ii) classifying a species as threatened or endangered when it is not warranted (overprotection). Recent surveys indicate threatened spectacled eider populations are increasing in western Alaska, prompting the U.S. Fish and Wildlife Service to reconsider the federal listing status. There are multiple criteria set for assessing spectacled eider status, and here we focus on the abundance and decision analysis criteria. We estimated population metrics using state-space models for Alaskan breeding populations of spectacled eiders. We projected abundance over 50 years using posterior estimates of abundance and process variation to estimate the probability of quasi-extinction. The decision analysis maps the risk of quasi-extinction to the loss associated with making a misclassification error (i.e., underprotection) through a loss function. Our results indicate that the Yukon Kuskokwim Delta breeding population in western Alaska has met the recovery criteria but the Arctic Coastal Plain population in northern Alaska has not. The methods employed here provide an example of accounting for uncertainty and incorporating value judgements in such a way that the decision-makers may understand the risk of committing a misclassification error. Incorporating the abundance threshold and decision analysis in the reclassification criteria greatly increases the transparency and defensibility of the classification decision, a critical aspect for making effective decisions about species management and conservation.

PLoS ONE↗

USGS2026

Harmonization of aggregated freshwater biotic data to support continental and global assessment

Biodiversity loss and conservation are increasingly coming into focus in global policy fora, requiring information and assessments at wider spatial and temporal scales than previously considered. However, the monitoring framework required to support such data collection and assessment is lacking in many countries and is not harmonized across countries, hampering these efforts. Aggregation of existing freshwater data offers a solution to the problem of assessing status and trends of ecosystems and biodiversity at large spatial scales in the absence of nationally coordinated monitoring efforts. Analysis of aggregated data from different sources, collected using different protocols and with varying levels of metadata and supporting data, can be challenging and requires decisions regarding data comparability. In this paper, we identify the challenges inherent in harmonizing aggregated freshwater data for analysis, including general concerns related to research goals, spatial and temporal scale, sample selection, sampling effort, and site integrity. We also discuss the challenges related to measured parameters, sampled habitats, sample collection and processing methods, and data integrity for phytoplankton, benthic algae, macrophytes, zooplankton, benthic macroinvertebrates, fish, and supporting variables such as water and sediment chemistry. We provide a workflow to evaluate each of these challenges and make decisions about how best to work with the data. Finally, we review a case study from a large-scale analysis of freshwater data from the circumpolar Arctic region that exemplifies the encountered challenges and the chosen solutions. Through the description of the case study, we provide practical solutions to support aggregation and analysis of existing freshwater data. As global conversations about biodiversity status and trends continue, the demand for large-scale analyses of data from different sources will only grow. In the absence of globally harmonized monitoring, we are faced with the need to ensure comparability of data, making expert judgements where needed to support sound conclusions.

PLOS Water↗

USGS2009

Hierarchical spatial genetic structure of Common Eiders ( Somateria mollissima ) breeding along a migratory corridor

Documentation of spatial genetic discordance among breeding populations of Arctic-nesting avian species is important, because anthropogenic change is altering environmental linkages at micro- and macrogeographic scales. We estimated levels of population subdivision within Pacific Common Eiders ( Somateria mollissima v-nigrum ) breeding on 12 barrier islands in the western Beaufort Sea, Alaska, using molecular markers and capture—mark—recapture (CMR) data. Common Eider populations were genetically structured on a microgeographic scale. Regional comparisons between populations breeding on island groups separated by 90 km (Mikkelsen Bay and Simpson Lagoon) revealed structuring at 14 microsatellite loci ( F ST = 0.004, P < 0.01), a nuclear intron ( F ST = 0.022, P = 0.02), and mitochondrial DNA (Φ ST = 0.082, P < 0.05). The CMR data ( n = 34) did not indicate female dispersal between island groups. Concordance between genetic and CMR data indicates that females breeding in the western Beaufort Sea are strongly philopatric to island groups rather than to a particular island. Despite the apparent high site fidelity of females, coalescence-based models of gene flow suggest that asymmetrical western dispersal occurs between island groups and is likely mediated by Mikkelsen Bay females stopping early on spring migration at Simpson Lagoon to breed. Alternatively, late-arriving females may be predisposed to nest in Simpson Lagoon because of the greater availability and wider distribution of nesting habitat. Our results indicate that genetic discontinuities, mediated by female philopatry, can exist at microgeographic scales along established migratory corridors.

The Auk↗

USGS2009

Effects of horseshoe crab harvest in delaware bay on red knots: Are harvest restrictions working?

Each May, red knots ( Calidris canutus rufa ) congregate in Delaware Bay during their northward migration to feed on horseshoe crab eggs ( Limulus polyphemus ) and refuel for breeding in the Arctic. During the 1990s, the Delaware Bay harvest of horseshoe crabs for bait increased 10-fold, leading to a more than 90% decline in the availability of their eggs for knots. The proportion of knots achieving weights of more than 180 grams by 26-28 May, their main departure period, dropped from 0.6-0.8 to 0.14-0.4 over 1997-2007. During the same period, the red knot population stopping in Delaware Bay declined by more than 75%, in part because the annual survival rate of adult knots wintering in Tierra del Fuego declined. Despite restrictions, the 2007 horseshoe crab harvest was still greater than the 1990 harvest, and no recovery of knots was detectable. We propose an adaptive management strategy with recovery goals and annual monitoring that, if adopted, will both allow red knot and horseshoe crab populations to recover and permit a sustainable harvest of horseshoe crabs.

Delaware Bay↗

USGS2011

King eider foraging effort during the pre-breeding period in Alaska

For reproduction, many arctic-nesting migratory birds rely on nutrients obtained on the breeding grounds, so they devote sufficient time to foraging immediately prior to nesting. However, little is known about the increase in foraging effort necessary to meet the energetic requirements of reproduction. In early June 2006 and 2008, we quantified the proportion of time spent foraging before breeding by a large sea duck, the King Eider ( Somateria spectabilis ), on its breeding grounds in northern Alaska. During >235 hours of behavioral observations, both male and female King Eiders spent >50% of the day loafing (resting, sleeping, comfort behavior, or being alert). Females foraged on average 30% of the time (mean 7.2 hr day -1 ,95% CI 6.0-8.4 hr day -1 ), three times as much as males (9%; 2.3 hr day -1 , 95% CI 1.5–2.8 hr day -1 ). The most common prey in ponds where the eiders foraged were chironomid larvae and worms ranging in length from 1 to 30 mm. If the King Eider's daily energy expenditure on its breeding grounds is similar to values published for related species, it would need to ingest only 0.2–0.6 g dry mass of invertebrates per minute of foraging to meet its energetic requirements. Males did not lose body mass before breeding, and we assume that their foraging effort was sufficient for energy balance. Therefore, female King Eiders appear to triple their foraging effort over maintenance requirements to meet the energetic challenges of egg formation.

Alaska↗

USGS2013

Genetic structure of the Common Eider in the western Aleutian Islands prior to fox eradication

Since the late 18 th century bird populations residing in the Aleutian Archipelago have been greatly reduced by introduced arctic foxes ( Alopex lagopus ). We analyzed data from microsatellite, nuclear intron, and mitochondrial (mtDNA) loci to examine the spatial genetic structure, demography, and gene flow among four Aleutian Island populations of the Common Eider ( Somateria mollissima ) much reduced by introduced foxes. In mtDNA, we found high levels of genetic structure within and between island groups (Φ ST = 0.643), but we found no population subdivision in microsatellites or nuclear introns. Differences in genetic structure between the mitochondrial and nuclear genomes are consistent with the Common Eider's breeding and winter biology, as females are highly philopatric and males disperse. Nevertheless, significant differences between islands in the mtDNA of males and marginal significance ( P = 0.07) in the Z -linked locus Smo 1 suggest that males may also have some level of fidelity to island groups. Severe reduction of populations by the fox, coupled with females' high philopatry, may have left the genetic signature of a bottleneck effect, resulting in the high levels of genetic differentiation observed in mtDNA (Φ ST = 0.460–0.807) between islands only 440 km apart. Reestablishment of the Common Eider following the fox's eradication was likely through recruitment from within the islands and bolstered by dispersal from neighboring islands, as suggested by the lack of genetic structure and asymmetry in gene flow between Attu and the other Near Islands.

Aleutian Islands↗

USGS2008

Physiological response of some economically important freshwater salmonids to catch-and-release fishing

Catch-and-release fishing regulations are widely used by fishery resource managers to maintain both the quantity and quality of sport fish populations. We evaluated blood chemistry disturbances in wild brook trout Salvelinus fontinalis, brown trout Salmo trutta, cutthroat trout Oncorhynchus clarkii, and Arctic grayling Thymallus arcticus that had been hooked and played for 1-5 min in waters of the intermountain western United States. A hatchery stock of brown trout was included for comparison. To assess time needed for recovery, additional test groups were played for 5 min and then released into net-pens, where they were held for up to 72 h. The osmoregulatory and metabolic disturbances associated with catch-and-release fishing under the conditions we tested were minimal and judged to be well within normal physiological tolerance limits. In fish that were held for recovery, the blood chemistry alterations that did occur appeared to be related to stress from confinement in the net-pens. Our results confirm the results of previous studies, showing that prerelease air exposure and handling cause more physiological stress than does either hooking per se or playing time. Fishery managers must be aware of the differences in the perceptions, attitudes, and values of different societal groups, some of which feel that catch-and-release fishing should be banned because it is cruel to the animals. On the basis of brain anatomy, it seems highly unlikely that fish experience pain in the same manner as humans experience it, because fish lack a neocortex, the brain structure that enables the sensation of pain in higher vertebrates. However, independent of the neurobiological argument, our results indicate that under conditions similar to those tested, fish subjected to catch and release are neither suffering nor particularly stressed. Improved education programs about the relatively benign physiological effects of catch-and-release fishing as a fishery management practice would be beneficial to anglers and the nonfishing public alike.

North American Journal of Fisheries Management↗

USGS2000

Lichens of Izembek National Wildlife Refuge, westernmost Alaska Peninsula

One hundred eighty-two taxa of lichens including two lichen parasites are reported from Izembek National Wildlife Refuge on the tip of the Alaska Peninsula. Metasphaeria tartarina is new to North America; Scoliciosporum umbrinum is new to Alaska. Wide-ranging, arctic-alpine, and boreal species dominate the lichen flora; a coastal element is moderately represented, while amphi-Beringian species form a minor element. Epigeic lichen abundance is described along a lowland to alpine mesotopographic gradient selected to represent major landscape variation in the refuge. Of six major community types identified, three had significant lichen components.

Alaska↗

USGS2002

Lichens from Simeonof Wilderness, Shumagin Island, Southwestern Alaska

One hundred eighty-eight taxa of lichens are reported from Simeonof Island in the Shumagin Islands of southwestern Alaska. Wide-ranging arctic-alpine and boreal species dominate the lichens; a coastal element is moderately represented, while amphi-Beringian species form a minor element. The lichen component of Empetrum nigrum dwarf shrub heath, the dominant vegetation type, was analyzed to identify the most frequently occurring lichens within this community.

Alaska↗

USGS2007

Reproductive strategies of northern geese: Why wait?

Migration and reproductive strategies in waterbirds are tightly linked, with timing of arrival and onset of nesting having important consequences for reproductive success. Whether migratory waterbirds are capital or income breeders is predicated by their spring migration schedule, how long they are on breeding areas before nesting, and how adapted they are to exploiting early spring foods at northern breeding areas. However, for most species, we know little about individual migration schedules, arrival times, and duration of residence on breeding areas before nesting. To document these relationships in a northern nesting goose, we radiotracked winter-marked Tule Greater White-fronted Geese ( Anser albifrons elgasi ; hereafter “Tule Geese”; n = 116) from the time of their arrival in Alaska through nesting. Tule Geese arrived on coastal feeding areas in mid-April and moved to nesting locations a week later. They initiated nests 15 days (range: 6–24 days) after arrival, a period roughly equivalent to the duration of rapid follicle growth. Tule Geese that arrived the earliest were more likely to nest than geese that arrived later; early arrivals also spent more time on the breeding grounds and nested earlier than geese that arrived later. The length of the prenesting period was comparable to that of other populations of this species, but longer than for goose species that initiate rapid follicle growth before arrival on the breeding grounds. We suggest that Tule Geese nesting in more temperate climates are more likely to delay breeding to exploit local food resources than Arctic-nesting species that may be constrained by short growing seasons.

The Auk↗

USGS2008

Trends in abundance of collared lemmings near Cape Churchill, Manitoba, Canada

Regular, multiannual cycles observed in the population abundance of small mammals in many arctic and subarctic ecosystems have stimulated substantial research, particularly among population ecologists. Hypotheses of mechanisms generating regular cycles include predator-prey interactions, limitation of food resources, and migration or dispersal, as well as abiotic factors such as cyclic climatic variation and environmental stochasticity. In 2004 and 2005, we used indirect methods to estimate trends in population size of Richardson's collared lemmings (Dicrostonyx richardsoni) retrospectively, and evaluated the extent of synchrony between lemming populations at 2 coastal tundra study areas separated by approximately 60 km near Cape Churchill, Manitoba, Canada. We collected scars on willow plants (Salix) resulting from lemming feeding. Ages of scars ranged from 0 to 13 years at both study areas. Scar-age frequency appeared cyclic and we used nonlinear Poisson regression to model the observed scar-age frequency. Lemming populations cycled with 2.8-year periodicity and the phase of the cycle was synchronous between the 2 study areas. We suggest that our approach could be applied in multiple settings and may provide the most efficient way to gather data on small mammals across both space and time in a diversity of landscapes. ?? 2008 American Society of Mammalogists.

Journal of Mammalogy↗

USGS2012

Spatial genetic structure and asymmetrical gene flow within the Pacific walrus

Pacific walruses ( Odobenus rosmarus divergens ) occupying shelf waters of Pacific Arctic seas migrate during spring and summer from 3 breeding areas in the Bering Sea to form sexually segregated nonbreeding aggregations. We assessed genetic relationships among 2 putative breeding populations and 6 nonbreeding aggregations. Analyses of mitochondrial DNA (mtDNA) control region sequence data suggest that males are distinct among breeding populations (Φ ST =0.051), and between the eastern Chukchi and other nonbreeding aggregations (Φ ST =0.336–0.449). Nonbreeding female aggregations were genetically distinct across marker types (microsatellite F ST =0.019; mtDNA Φ ST =0.313), as was eastern Chukchi and all other nonbreeding aggregations (microsatellite F ST =0.019–0.035; mtDNA Φ ST =0.386–0.389). Gene flow estimates are asymmetrical from St. Lawrence Island into the southeastern Bering breeding population for both sexes. Partitioning of haplotype frequencies among breeding populations suggests that individuals exhibit some degree of philopatry, although weak. High levels of genetic differentiation among eastern Chukchi and all other nonbreeding aggregations, but considerably lower genetic differentiation between breeding populations, suggest that at least 1 genetically distinct breeding population remained unsampled. Limited genetic structure at microsatellite loci between assayed breeding areas can emerge from several processes, including male-mediated gene flow, or population admixture following a decrease in census size (i.e., due to commercial harvest during 1880–1950s) and subsequent recovery. Nevertheless, high levels of genetic diversity in the Pacific walrus, which withstood prolonged decreases in census numbers with little impact on neutral genetic diversity, may reflect resiliency in the face of past environmental challenges.

Journal of Mammalogy↗

USGS2022

Detection of Splendidofilaria sp. (Onchocercidae:Splendidofilariinae) Microfilaria within Alaskan ground-dwelling birds in the grouse subfamily tetraoninae using taqman probe-based real-time PCR

Grouse and ptarmigan (Galliformes) harbor fairly diverse helminth faunas that can impact the host's health, including filarial nematodes in the genus Splendidofilaria . As host and parasite distributions are predicted to shift in response to recent climate change, novel parasites may be introduced into a region and impose additional stressors on bird populations. Limited information is available on the prevalence of filariasis in Alaska galliforms. To date, no molecular surveys have been completed. Past studies relied on examining blood smears or total body necropsies, which are time-consuming and may not detect filarial parasites with low prevalence in hosts. Therefore, we developed a TaqMan probe-based real-time PCR assay targeting the cytochrome c oxidase 1 gene ( COI ) of Splendidofilaria to decrease processing times and increase sensitivity as well as provide baseline data on the diversity of filariid infections in galliform species in Alaska. We screened a combined total of 708 galliform samples (678 unique individual birds) from different tissues (blood, muscle, and lung) for the presence of filarial DNA across the state of Alaska. Real-time PCR screening revealed an overall prevalence of filarial infection of 9.5% across species: Bonasa umbellus (0%, n = 23), Dendragapus fuliginosus (0%, n = 8), Falcipennis canadensis (26.8%, n = 198), Lagopus lagopus (2.6%, n = 274), Lagopus leucura (0%, n = 23), Lagopus muta (3%, n = 166), and Tympanuchus phasianellus (12.5%, n = 16). We observed microfilarial infections throughout most of Alaska except in Arctic regions and the Aleutian Islands where viable vectors may not be present.

Journal of Parasitology↗

USGS2005

Survival of Western Sandpiper broods on the Yukon-Kuskokwim Delta, Alaska

The rate of chick growth in high-latitude breeding shorebirds is rapid, but little is known about the effect of chick mass, growth, and brood movements on subsequent brood survival. To address these topics, we monitored chick growth patterns, daily brood movements, and survival of Western Sandpipers ( Calidris mauri ) on the Yukon-Kuskokwim Delta, Alaska. We assessed the effect of chick age, mass, and hatch date on brood survival using Program MARK. We mapped brood locations daily, and compared brood movement patterns between successful and unsuccessful broods. Younger chicks survived at lower rates and moved shorter distances than older chicks. The overall probability of one or more chicks from a brood surviving to 15 days of age was 0.73 ± 0.05 SE. Brood survival declined seasonally, and broods with heavier chicks survived at higher rates than those with lighter chicks. On average, successful broods fledged 1.7 ± 0.1 SE chicks. Rate of chick growth was intermediate between those of high arctic and temperate-breeding shorebirds, and chick mass at hatching declined seasonally. Western Sandpiper brood survival was lowest when chicks were young, spatially clumped, and unable to maintain homeothermy, probably because young chicks were more vulnerable to both complete depredation events and extreme weather. Our data suggest that larger, older chicks are able to avoid predators by being spatially dispersed and highly mobile; thermal independence, achieved after approximately day five, enables chicks to better endure prolonged periods of cold and low food availability.

Condor↗

USGS2015

Breeding habitat associations and predicted distribution of an obligate tundra-breeding bird, Smith's Longspur

Smith's Longspur ( Calcarius pictus ) is a species of conservation concern which breeds in Arctic habitats that are expected to be especially vulnerable to climate change. We used bird presence and habitat data from point-transect surveys conducted at 12 sites across the Brooks Range, Alaska, 2003–2009, to identify breeding areas, describe local habitat associations, and identify suitable habitat using a predictive model of Smith's Longspur distribution. Smith's Longspurs were observed at seven sites, where they were associated with a variety of sedge–shrub habitats composed primarily of mosses, sedges, tussocks, and dwarf shrubs; erect shrubs were common but sparse. Nonmetric multidimensional scaling ordination of ground cover revealed positive associations of Smith's Longspur presence with sedges and mosses and a negative association with high cover of shrubs. To model predicted distribution, we used boosted regression trees to relate landscape variables to occurrence. Our model predicted that Smith's Longspurs may occur in valleys and foothills of the northeastern and southeastern mountains and in upland plateaus of the western mountains, and farther west than currently documented, over a predicted area no larger than 15% of the Brooks Range. With climate change, shrubs are expected to grow larger and denser, while soil moisture and moss cover are predicted to decrease. These changes may reduce Smith's Longspur habitat quality and limit distribution in the Brooks Range to poorly drained lowlands and alpine plateaus where sedge–shrub tundra is likely to persist. Conversely, northward advance of shrubs into sedge tundra may create suitable habitat, thus supporting a northward longspur distribution shift.

The Condor↗

USGS2016

Ecological and evolutionary consequences of benthic community stasis in the very deep sea (>1500 m)

An enigma of deep-sea biodiversity research is that the abyss with its low productivity and densities appears to have a biodiversity similar to that of shallower depths. This conceptualization of similarity is based mainly on per-sample estimates (point diversity, within-habitat, or α-diversity). Here, we use a measure of between-sample within-community diversity (β 1H ) to examine benthic foraminiferal diversity between 333 stations within 49 communties from New Zealand, the South Atlantic, the Gulf of Mexico, the Norwegian Sea, and the Arctic. The communities are grouped into two depth categories: 200–1500 m and >1500 m. β 1H diversity exhibits no evidence of regional differences. Instead, higher values at shallower depths are observed worldwide. At depths of >1500 m the average β 1H is zero, indicating stasis or no biodiversity gradient. The difference in β 1H -diversity explains why, despite species richness often being greater per sample at deeper depths, the total number of species is greater at shallower depths. The greater number of communities and higher rate of evolution resulting in shorter species durations at shallower depths is also consistent with higher β 1H values.

Arctic Ocean;Gulf Of Mexico;Norwegian Sea;South At↗

USGS2013

Population genetics and evaluation of genetic evidence for subspecies in the Semipalmated Sandpiper (Calidris pusilla)

Semipalmated Sandpipers ( Calidris pusilla ) are among the most common North American shorebirds. Breeding in Arctic North America, this species displays regional differences in migratory pathways and possesses longitudinal bill length variation. Previous investigations suggested that genetic structure may occur within Semipalmated Sandpipers and that three subspecies corresponding to western, central, and eastern breeding groups exist. In this study, mitochondrial control region sequences and nuclear microsatellite loci were used to analyze DNA of birds (microsatellites: n = 120; mtDNA: n = 114) sampled from seven North American locations. Analyses designed to quantify genetic structure and diversity patterns, evaluate genetic evidence for population size changes, and determine if genetic data support the existence of Semipalmated Sandpiper subspecies were performed. Genetic structure based only on the mtDNA data was observed, whereas the microsatellite loci provided no evidence of genetic differentiation. Differentiation among locations and regions reflected allele frequency differences rather than separate phylogenetic groups, and similar levels of genetic diversity were noted. Combined, the two data sets provided no evidence to support the existence of subspecies and were not useful for determining migratory connectivity between breeding sites and wintering grounds. Birds from western and central groups displayed signatures of population expansions, whereas the eastern group was more consistent with a stable overall population. Results of this analysis suggest that the eastern group was the source of individuals that colonized the central and western regions currently utilized by Semipalmated Sandpipers.

Waterbirds↗