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At least 1,441 records · Page 80Linked to original sources

Prioritizing bottomland hardwood forest sites for protection and augmentation

Bottomland hardwood forest has been greatly diminished by conversion to agriculture. Less than 25% of the pre-Columbian bottomland hardwood forests remain in the southeastern United States. Because of the valuable ecological and hydrological functions performed by these forests, their conservation and restoration has been a high priority. Part of these restoration efforts has focused on developing tools that can be used for both assessments at the landscape level and policy implementation at the local level. The distribution of bottomland hardwood forests in the Cache and White River watersheds in eastern Arkansas were examined using existing GIS databases. Criteria were developed to select areas that should be conserved or augmented for wildlife habitat. Over 67% of the study area was classified as agriculture, with bottomland hardwood forest the next largest habitat class. The thickness of a forest fragment was defined as the radius of the largest circle that can be inscribed in a fragment. Thickness was used in three ways. First, individual forest fragments were identified and selected based on ecological function using criteria we established. Second, individual fragments that were too small to support interior species, but large enough that if moderately augmented they could recover that function, were identified and selected. These augmentable fragments were further prioritized by adjacency to habitat that might be suitable for reforestation, namely agriculture. Third, watersheds were prioritized for conservation and augmentation based on the size and distributions of forest fragment thickness and area within each watershed.

Arkansas↗

A methodology for quantifying and mapping ecosystem services provided by watersheds

Watershed processes – physical, chemical, and biological – are the foundation for many benefits that ecosystems provide for human societies. A crucial step toward accurately representing those benefits, so they can ultimately inform decisions about land and water management, is the development of a coherent methodology that can translate available data into the ecosystem services (ES) produced by watersheds. Ecosystem services (ES) provide an instinctive way to understand the tradeoffs associated with natural resource management. We provide a synthesis of common terminology and explain a rationale and framework for distinguishing among the components of ecosystem service delivery, including: an ecosystem’s capacity to produce a service; societal demand for the service; ecological pressures on this service; and flow of the service to people. We discuss how interpretation and measurement of these components can differ among provisioning, regulating, and cultural services and describe selected methods for quantifying ES components as well as constraints on data availability. We also present several case studies to illustrate our methods, including mapping capacity of several water purification services and demand for two forms of wildlife-based recreation, and discuss future directions for ecosystem service assessments. Our flexible framework treats service capacity, demand, ecological pressure, and flow as separate but interactive entities to better evaluate the sustainability of service provision across space and time and to help guide management decisions.

Book chapter↗

Blood from a turnip: tissue origin of low-coverage shotgun sequencing libraries affects recovery of mitogenome sequences

Next generation sequencing methods allow rapid, economical accumulation of data that have many applications, even at relatively low levels of genome coverage. However, the utility of shotgun sequencing data sets for specific goals may vary depending on the biological nature of the samples sequenced. We show that the ability to assemble mitogenomes from three avian samples of two different tissue types varies widely. In particular, data with coverage typical of microsatellite development efforts (∼1×) from DNA extracted from avian blood failed to cover even 50% of the mitogenome, relative to at least 500-fold coverage from muscle-derived data. Researchers should consider possible applications of their data and select the tissue source for their work accordingly. Practitioners analyzing low-coverage shotgun sequencing data (including for microsatellite locus development) should consider the potential benefits of mitogenome assembly, including internal barcode verification of species identity, mitochondrial primer development, and phylogenetics.

Mitochondrial DNA↗

Estimated Perennial Streams of Idaho and Related Geospatial Datasets

The perennial or intermittent status of a stream has bearing on many regulatory requirements. Because of changing technologies over time, cartographic representation of perennial/intermittent status of streams on U.S. Geological Survey (USGS) topographic maps is not always accurate and (or) consistent from one map sheet to another. Idaho Administrative Code defines an intermittent stream as one having a 7-day, 2-year low flow (7Q2) less than 0.1 cubic feet per second. To establish consistency with the Idaho Administrative Code, the USGS developed regional regression equations for Idaho streams for several low-flow statistics, including 7Q2. Using these regression equations, the 7Q2 streamflow may be estimated for naturally flowing streams anywhere in Idaho to help determine perennial/intermittent status of streams. Using these equations in conjunction with a Geographic Information System (GIS) technique known as weighted flow accumulation allows for an automated and continuous estimation of 7Q2 streamflow at all points along a stream, which in turn can be used to determine if a stream is intermittent or perennial according to the Idaho Administrative Code operational definition. The selected regression equations were applied to create continuous grids of 7Q2 estimates for the eight low-flow regression regions of Idaho. By applying the 0.1 ft3/s criterion, the perennial streams have been estimated in each low-flow region. Uncertainty in the estimates is shown by identifying a 'transitional' zone, corresponding to flow estimates of 0.1 ft3/s plus and minus one standard error. Considerable additional uncertainty exists in the model of perennial streams presented in this report. The regression models provide overall estimates based on general trends within each regression region. These models do not include local factors such as a large spring or a losing reach that may greatly affect flows at any given point. Site-specific flow data, assuming a sufficient period of record, generally would be considered to represent flow conditions better at a given site than flow estimates based on regionalized regression models. The geospatial datasets of modeled perennial streams are considered a first-cut estimate, and should not be construed to override site-specific flow data.

Data Series↗

Knowledge gaps and opportunities for understanding water-quality processes affecting water availability for beneficial uses

This report describes scientific gaps that limit our ability to predict water-quality effects on water availability for beneficial uses across the United States. Water-quality constituents considered in the report include salinity, geogenic constituents, contaminants of emerging concern, and nitrogen. For each constituent, there is a selection of scientific gaps, approaches, and outcomes to help guide portions of the U.S. Geological Survey Water Mission Area ( https://www.usgs.gov/mission-areas/water-resources ) research portfolio and other national research efforts. Although the report is not comprehensive, and new issues are likely to emerge, it does provide an assessment of many of the major challenges and opportunities concerning water-quality effects on water availability for beneficial uses. Due to the changing nature of water-quality concerns, and to deal with issues not described in this report, it will be important to maintain broad-based expertise and flexibility to address the full spectrum of long-term water-quality issues facing the Nation’s water resources.

Open-File Report↗

User's guide to the Radiometric Age Data Bank (RADB)

The Radiometric Age Data Bank (RADB) has been established by the U.S. Geological Survey, as a means for collecting and organizing the estimated 100,000 radiometric ages presently published for the United States. RADB has been constructed such that a complete sample description (location, rock type, etc.), literature citation, and extensive analytical data are linked to form an independent record for each sample reported in a published work. Analytical data pertinent to the potassium-argon, rubidium-strontium, uranium-thorium-lead, lead-alpha, and fission-track methods can be accommodated, singly or in combinations, for each record. Data processing is achieved using the GIPSY program (University of Oklahoma) which maintains the data file and builds, updates, searches, and prints the records using simple yet versatile command statements. Searching and selecting records is accomplished by specifying the presence, absence, or (numeric or alphabetic) value of any element of information in the data bank, and these specifications can be logically linked to develop sophisticated searching strategies. Output is available in the form of complete data records, abbreviated tests, or columnar tabulations. Samples of data-reporting forms, GIPSY command statements, output formats, and data records are presented to illustrate the comprehensive nature and versatility of the Radiometric Age Data Bank.

Open-File Report↗

Natural attenuation of chloroacetinilide herbicides in aquatic systems

Chloroacetanilide herbicides (e.g. alachlor and metolachlor) and their breakdown products are frequently found in agriculturally impacted and other natural waters. Although these compounds are usually present at low concentrations in aquatic systems, defining their fate and attenuation rate is important because they can be toxic at comparatively low exposure levels. This paper summarizes results from a four-year research program assessing factors that affect herbicide attenuation rates and breakdown product formation patterns in aquatic systems. Over 70 different field microcosms (11.3 m 3 cylindrical fiberglass tanks) were selectively manipulated (in replicate) to create nine unique aquatic ecosystems for this study. Alachlor and/or metolachlor were added to these units and transformations were observed over time. Alachlor half-lives ranged from 6.0 days to more than 100 days depending upon the temperature, oxygen conditions, and the nutrient conditions in the microcosm waters. The highest rates of alachlor decay were observed in warm, nutrient-rich, anaerobic water columns, whereas the lowest alachlor decay rates were observed under cooler, aerobic, oligotrophic water conditions. Similar relationships were observed for metolachlor, although metolachlor decay rates were about 40% slower. Our data suggest that herbicides will decay rapidly in waters that are high in nutrients possibly resulting from human activities. Alternately, low nutrient or pristine waters will have the lowest rates of herbicide decay. On a policy level, all efforts should be made to prevent exposure of comparatively pristine waters to herbicide inputs.

Conference Paper↗

Pathogens and diseases of freshwater mussels in the United States: Studies on bacterial transmission and depuration

Unionid mussels are recognized as important contributors to healthy aquatic ecosystems, as well as bioindicators of environmental perturbations. Because they are sedentary, filter feeding animals and require hosts (i.e., fishes) to transform embryonic glochidia, mussels are susceptible to direct adverse environmental parameters, and indirect parameters that restrict the timely presence of the host(s). Their numbers have declined in recent decades to a point that this fauna is regarded as one of the most imperiled in North America. The most significant threat to populations of native unionids in recent years has been the introduction and spread of zebra mussels Dreissena polymorpha. Many federal and state agencies, and private interests are now engaged in mussel conservation efforts, including collecting selected imperiled species from impacted rivers and lakes and propagating them at refuges for future population augmentations. One essential consideration with mussel propagation and their intensive culture at refugia is the prevention of pathogen introductions and control of diseases. Currently, there are few reports of etiological agents causing diseases among freshwater mussels; however, because of increased observations of mussel die-offs in conjunction with transfers of live animals between natural waters and refugia, disease problems can be anticipated to emerge. This review summarizes research to develop bacterial isolation techniques, study pathogen transmission between fish and mussels, identify causes of seasonal mussel die-offs, and develop non-destructive methods for pathogen detection. These efforts were done to develop disease preventative techniques for use by resource managers to avoid potential large-scale disease problems in restoration and population augmentation efforts among imperiled populations.

Conference Paper↗

Usoi dam wave overtopping and flood routing in the Bartang and Panj Rivers, Tajikistan

The Usoi dam was created in the winter of 1911 after an enormous seismogenic rock slide completely blocked the valley of the Bartang River in the Pamir Mountains of southeastern Tajikistan. At present the dam impounds 17 million cubic meters of water in Lake Sarez. Flood volume and discharge estimates were made for several landslide generated floods that could overtop the dam. For landslide volumes of 200, 500, and 1,000 million cubic meters, estimated overtopping flood volumes were 2, 22, and 87 million cubic meters of water, respectively. Estimated peak discharge at the dam for these three flood scenarios were 57,000, 490,000, and 1,580,000 m3/s, based on triangular hydrographs of 70-, 90-, and 110-s durations, respectively. Flood-routing simulations were made for the three landslide-induced overtopping floods over a 530-km reach of the Bartang and Panj Rivers below the Usoi dam. A one-dimensional flow model using a Riemann numerical solution technique was selected for the analysis. For the 87 million cubic meter volume overtopping flood scenario, the peak flows were approximately 1, 100, 800, and 550 m3/s at locations 50, 100, and 150 km downstream of the dam respectively. ?? Springer 2006.

Natural Hazards↗

Atmospheric deposition, water-quality, and sediment data for selected lakes in Mount Rainer, North Cascades, and Olympic National Parks, Washington, 2008-10

To evaluate the potential effect from atmospheric deposition of nitrogen to high-elevation lakes, the U.S. Geological Survey partnered with the National Park Service to develop a "critical load" of nitrogen for sediment diatoms. A critical load is defined as the level of a given pollutant (in this case, nitrogen) at which detrimental effects to a target endpoint (sediment diatoms) result. Because sediment diatoms are considered one of the "first responders" to ecosystem changes from nitrogen, they are a sensitive indicator for nitrogen deposition changes in natural areas. This report presents atmospheric deposition, water quality, sediment geochronology, and sediment diatom data collected from July 2008 through August 2010 in support of this effort.

Washington↗

[Book review] Seabirds of Hawaii: Natural history and conservation

This volume is a rather odd contribution, a hybrid between an academic work and a popular book, and both suffers and benefits from these attributes. The 18 chapters are divided into four parts that deal with the environment and humans (3 chapters and ca. 12% of the text), comparative biology of Hawaiian seabirds (5 chapters, 26%), treatments of Hawaiian seabird groups by family (7 chapters, 34%), and conservation (3 chapters, 16%). At the end of the book are an appendix of common and scientific names for plants, birds, mammals, fish, and a few invertebrates; a 6-page "selected" bibliography with pertinent references for each chapter; and an index.

The Auk↗

Characterization of the porosity distribution in the upper part of the karst Biscayne aquifer using common offset ground penetrating radar, Everglades National Park, Florida

The karst Biscayne aquifer is characterized by a heterogeneous spatial arrangement of porosity and hydraulic conductivity, making conceptualization difficult. The Biscayne aquifer is the primary source of drinking water for millions of people in south Florida; thus, information concerning the distribution of karst features that concentrate the groundwater flow and affect contaminant transport is critical. The principal purpose of the study was to investigate the ability of two-dimensional ground penetrating radar (GPR) to rapidly characterize porosity variability in the karst Biscayne aquifer in south Florida. An 800-m-long GPR transect of a previously investigated area at the Long Pine Key Nature Trail in Everglades National Park, collected in fast acquisition common offset mode, shows hundreds of diffraction hyperbolae. The distribution of diffraction hyperbolae was used to estimate electromagnetic (EM) wave velocity at each diffraction location and to assess both horizontal and vertical changes in velocity within the transect. A petrophysical model (complex refractive index model or CRIM) was used to estimate total bulk porosity. A set of common midpoint surveys at selected locations distributed along the common-offset transect also were collected for comparison with the common offsets and were used to constrain one-dimensional (1-D) distributions of porosity with depth. Porosity values for the saturated Miami Limestone ranged between 25% and 41% for common offset GPR surveys, and between 23% and 39% for common midpoint GPR surveys. Laboratory measurements of porosity in five whole-core samples from the saturated part of the aquifer in the study area ranged between 7.1% and 41.8%. GPR estimates of porosity were found to be valid only under saturated conditions; other limitations are related to the vertical resolution of the GPR signal and the volume of the material considered by the measurement methodology. Overall, good correspondence between GPR estimates and the direct porosity values from the whole-core samples confirms the ability of GPR common offset surveys to provide rapid characterization of porosity variability in the Biscayne aquifer. The common offset survey method has several advantages: (1) improved time efficiency in comparison to other GPR acquisition modes such as common midpoints; and (2) enhanced lateral continuity of porosity estimates, particularly when compared to porosity measurements on 1-D samples such as rock cores. The results also support the presence of areas of low EM wave velocity or high porosity under saturated conditions, causing velocity pull-down areas and apparent sag features in the reflection record. This study shows that GPR can be a useful tool for improving understanding of the petrophysical properties of highly heterogeneous systems such as karst aquifers, and thus may assist with the development of more accurate groundwater flow models, such as those used for restoration efforts in the Everglades.

Florida↗

Unintended consequences and trade-offs of fish passage

We synthesized evidence for unintended consequences and trade-offs associated with the passage of fishes. Provisioning of fish passageways at dams and dam removals are being carried out increasingly as resource managers seek ways to reduce fragmentation of migratory fish populations and restore biodiversity and nature-like ecosystem services in tributaries altered by dams. The benefits of provisioning upstream passage are highlighted widely. Possible unwanted consequences and trade-offs of upstream passage are coming to light, but remain poorly examined and underappreciated. Unintended consequences arise when passage of native and desirable introduced fishes is delayed, undone (fallback), results in patterns of movement and habitat use that reduce Darwinian fitness (e.g. ecological traps), or is highly selective taxonomically and numerically. Trade-offs arise when passage decisions intended to benefit native species interfere with management decisions intended to control the unwanted spread of non-native fishes and aquatic invertebrates, or genes, diseases and contaminants carried by hatchery and wild fishes. These consequences and trade-offs will vary in importance from system to system and can result in large economic and environmental costs. For some river systems, decisions about how to manage fish passage involve substantial risks and could benefit from use of a formal, structured process that allows transparent, objective and, where possible, quantitative evaluation of these risks. Such a process can also facilitate the design of an adaptive framework that provides valuable insights into future decisions.

Fish and Fisheries↗

Landscape connectivity for bobcat (Lynx rufus) and lynx (Lynx canadensis) in the Northeastern United States

Landscape connectivity is integral to the persistence of metapopulations of wide ranging carnivores and other terrestrial species. The objectives of this research were to investigate the landscape characteristics essential to use of areas by lynx and bobcats in northern New England, map a habitat availability model for each species, and explore connectivity across areas of the region likely to experience future development pressure. A Mahalanobis distance analysis was conducted on location data collected between 2005 and 2010 from 16 bobcats in western Vermont and 31 lynx in northern Maine to determine which variables were most consistent across all locations for each species using three scales based on average 1) local (15 minute) movement, 2) linear distance between daily locations, and 3) female home range size. The bobcat model providing the widest separation between used locations and random study area locations suggests that they cue into landscape features such as edge, availability of cover, and development density at different scales. The lynx model with the widest separation between random and used locations contained five variables including natural habitat, cover, and elevation—all at different scales. Shrub scrub habitat—where lynx’s preferred prey is most abundant—was represented at the daily distance moved scale. Cross validation indicated that outliers had little effect on models for either species. A habitat suitability value was calculated for each 30 m 2 pixel across Vermont, New Hampshire, and Maine for each species and used to map connectivity between conserved lands within selected areas across the region. Projections of future landscape change illustrated potential impacts of anthropogenic development on areas lynx and bobcat may use, and indicated where connectivity for bobcats and lynx may be lost. These projections provided a guide for conservation of landscape permeability for lynx, bobcat, and species relying on similar habitats in the region.

PLoS ONE↗

Ground-water quality data in the San Fernando-San Gabriel study unit, 2005— Results from the California GAMA program

Ground-water quality in the approximately 460 square mile San Fernando-San Gabriel study unit (SFSG) was investigated between May and July 2005 as part of the Priority Basin Assessment Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The GAMA Priority Basin Assessment Project was developed in response to the Groundwater Quality Monitoring Act of 2001 and is being conducted by the U.S. Geological Survey (USGS) in cooperation with the California State Water Resources Control Board (SWRCB). The San Fernando-San Gabriel study was designed to provide a spatially unbiased assessment of raw ground-water quality within SFSG, as well as a statistically consistent basis for comparing water quality throughout California. Samples were collected from 52 wells in Los Angeles County. Thirty-five of the wells were selected using a spatially distributed, randomized grid-based method to provide statistical representation of the study area (grid wells), and seventeen wells were selected to aid in the evaluation of specific water-quality issues or changes in water chemistry along a historic ground-water flow path (understanding wells). The ground-water samples were analyzed for a large number of synthetic organic constituents [volatile organic compounds (VOCs), pesticides and pesticide degradates], constituents of special interest [perchlorate, N-nitrosodimethylamine (NDMA), 1,2,3-trichloropropane (1,2,3-TCP), and 1,4-dioxane], naturally occurring inorganic constituents (nutrients, major and minor ions, and trace elements), radioactive constituents, and microbial indicators. Naturally occurring isotopes (tritium, and carbon-14, and stable isotopes of hydrogen, oxygen, and carbon), and dissolved noble gases also were measured to help identify the source and age of the sampled ground water. Quality-control samples (blanks, replicates, samples for matrix spikes) were collected at approximately one-fifth (11 of 52) of the wells, and the results for these samples were used to evaluate the quality of the data for the ground-water samples. Assessment of the quality-control results showed that the data had very little bias or variability and resulted in censoring of less than 0.7 percent (32 of 4,484 measurements) of the data collected for ground-water samples. This study did not attempt to evaluate the quality of water delivered to consumers; after withdrawal from the ground, water typically is treated, disinfected, or blended with other waters to maintain acceptable water quality. Regulatory thresholds apply to treated water that is served to the consumer, not to raw ground water. However, to provide some context for the results, concentrations of constituents measured in the raw ground water were compared with health-based thresholds established by the U.S. Environmental Protection Agency (USEPA) and California Department of Public Health (CDPH) and thresholds established for aesthetic concerns (secondary maximum contaminant levels, SMCL-CA) by CDPH. VOCs were detected in more than 90 percent (33 of 35) of grid wells. For all wells sampled for SFSG, nearly all VOC detections were below health-based thresholds, and most were less than one-tenth of the threshold values. Samples from seven wells had at least one detection of PCE, TCE, tetrachloromethane, NDMA, or 1,2,3-TCP at or above a health-based threshold. Pesticides were detected in about 90 percent (31 of 35) grid wells and all detections in samples from SFSG wells were below health-based thresholds. Major ions, trace elements, and nutrients in samples from 17 SFSG wells were all below health-based thresholds, with the exception of one detection of nitrate that was above the USEPA maximum contaminant level (MCL-US). With the exception of 14 samples having radon-222 above the proposed MCL-US, radioactive constituents were below health-based thresholds for 16 of the SFSG wells sampled. Total dissolved solids in 6 of the 24 SFSG wells that were sampled ha

California↗

Progress toward a ground-water-quality monitoring network for Idaho

A ground-water-quality monitoring network is being designed for Idaho. The primary objectives of the network are to (1) determine the present quality of the State's ground water, (2) provide continual monitoring of groundwater quality for water-management purposes, and (3) serve as a warning system of undesirable changes in ground-water quality. Data are compiled for geohydrologic conditions, groundwater quality, cultural elements, and pollution sources. A "Hydrologic Unit Priority Index" is calculated from these data to select priority areas for monitoring purposes. New ground-water-quality data were collected where existing data were lacking and at some sites that were previously sampled. Old and new data at common sites correlated well, indicating that the water quality has not changed significantly. Most ground water in Idaho is of good quality for common uses; however, water quality may pose problems in local areas. The problems result from both natural and human causes. The potential for pollution of the aquifers is expected to be greatest in areas of greatest development. In Idaho, population centers and industries tend to be in areas of privately owned irrigated and arable · land. Therefore, these areas are of primary concern for monitoring ground-water quality. Other areas requiring monitoring include those with second-home development, mining and its related processes, and radioactive-waste disposal.

Idaho↗

Proceedings of the first biennial conference of research in Colorado Plateau National Parks

The 19 papers in this volume were selected from the 46 presentations given at the First Biennial Conference on Research in Colorado Plateau National Parks. The overall theme for this meeting was research, inventory, and monitoring in National Park Service units on the Colorado Plateau. The conference, held in Flagstaff Arizona, on 22-25 July 1991, was sponsored by the National Park Service Cooperative Park Studies Unit, Northern Arizona University, and the Petrified Forest, Zion, and Grand Canyon natural history associations.

Utah;Colorado;Arizona;New Mexico↗

Historical subsidence and wetland loss in the Mississippi delta plain

Five representative areas of the Mississippi River delta plain were investigated using remote images, marsh elevations, water depths, sediment cores, and radiocarbon dates to estimate the timing, magnitudes, and relative rates of marsh erosion and land subsidence at geological and historical time scales. In the Terrebonne-Lafourche region of rapid interior-wetland loss, former marshes are now submerged beneath water that averages 0.5 to 1.0 m deep. Most of the permanent historical flooding was caused by rapid subsidence and collapse of the delta plain that occurred during the late 1960s and 1970s. Subsequent erosion of the submerged delta-plain marsh was relatively minor at most of the coring sites. Widespread nearly simultaneous collapse of marshes across the Mississippi delta plain appears to be unprecedented and not repeated in the geological record of the past 1,000 years. Surface and subsurface data strongly indicate that the rapid subsidence and associated wetland loss were largely induced by extraction of hydrocarbons and associated formation water. Average historical rates of subsidence between 1965 and 1993 were about 8 to 12 mm/yr, whereas average geological rates of subsidence for the past 5,000 years were about 1 to 5 mm/yr. Natural processes such as deep-seated salt migration and fault movement cannot be discounted entirely, but there is no compelling evidence that these processes were responsible for the observed historical changes. Results of this study provide a basis for determining the relative importance of subsidence and shoreline erosion as causes of past wetland loss and for predicting sites and probable mechanisms of future wetland loss. This information should improve the selection of project sites and designs for wetland-loss mitigation and coastal restoration in south Louisiana.

Louisiana↗