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USGS2022

Tracking fish lifetime exposure to mercury using eye lenses

Mercury (Hg) uptake in fish is affected by diet, growth, and environmental factors such as primary productivity or oxygen regimes. Traditionally, fish Hg exposure is assessed using muscle tissue or whole fish, reflecting both loss and uptake processes that result in Hg bioaccumulation over entire lifetimes. Tracking changes in Hg exposure of an individual fish chronologically throughout its lifetime can provide novel insights into the processes that affect Hg bioaccumulation. Here we use eye lenses to determine Hg uptake at an annual scale for individual fish. We assess the widely distributed benthic round goby ( Neogobius melanostomus ) from the Baltic Sea, Lake Erie, and the St. Lawrence River. We aged layers of the eye lens using proportional relationships between otolith length at age and eye lens radius for each individual fish. Mercury concentrations were quantified using laser ablation inductively coupled plasma mass spectrometry. The eye lens Hg content revealed that Hg exposure increased with age in Lake Erie and the Baltic Sea but decreased with age in the St. Lawrence River, a trend not detected using muscle tissues. This novel methodology for measuring Hg concentration over time with eye lens chronology holds promise for quantifying how global change processes like increasing hypoxia affect the exposure of fish to Hg.

Environmental Science and Technology↗

USGS2012

USGS advances in integrated, high-resolution sea-floor mapping: inner continental shelf to estuaries

The U.S. Geological Survey (USGS) has been involved in geological mapping of the sea floor for the past thirty years. Early geophysical and acoustic mapping efforts using GLORIA (Geologic LOng Range Inclined ASDIC) a long-range sidescan-sonar system, provided broad-scale imagery of deep waters within the U.S. Exclusive Economic Zone (EEZ). In the early 1990's, research emphasis shifted from deep- to shallow-water environments to address pertinent coastal research and resource management issues. Use of shallow-water, high-resolution geophysical systems has enhanced our understanding of the processes shaping shallow marine environments. However, research within these shallow-water environments continues to present technological challenges.

Conference Paper↗

USGS2003

Predicting coastal retreat in the Florida Big Bend region of the Gulf Coast under climate change induced sea-level rise

Many wildlife preserves and refuges in coastal areas of our nation are slowly being inundated by rising sea-level. Land elevation and tidal flooding are key factors controlling the extent and zonation of coastal habitats. Warming of our global environment threatens to speed the rate of sea-level rise and perhaps further amplify the detrimental effects of tropical storms, droughts, and lightning fires. A field and modeling study was conducted to determine the current status of emergent vegetation and surficial hydrology and to predict marsh transgression under rising sea-level. Field surveys were conducted to relate vegetation cover and ecotones to surface elevation and tidal inundation. A regional site application of a GIS-based simulation model, WETLANDS, was developed to predict ecosystem response to changing sea-level conditions on a coastal reach of the Big Bend region in northwest Florida. The WETLANDS model contains functional probabilities of community tolerance to flooding conditions that dictate the rate and process of ecological succession and coastal retreat. Map information of hypsography and bathymetry of the study area were digitized and interpolated to construct a digital elevation model. Classified thematic mapper imagery of aquatic and terrestrial habitat at a community level was used to initialize model simulation by vegetative type. Model simulations were generated to predict a likelihood index of habitat change and conversion under different scenarios of sea-level rise. The WETLANDS model was applied to track the process and pattern of coastal inundation over space and time for low, mid, and high sea-level rise projections of 15, 50, and 95 cm over the next century. Model results indicated that major portions of this coastal zone will be permanently inundated by 2100, bringing about a combined migration of marsh habitat and displacement of forest habitat. Results show that lowland pine forests will undergo retreat on the order of thousands of hectares over the 21st century. Coastal marsh extent may actually increase slightly as a function of the low lying topography. Socioeconomic implications may be nominal for this area given its remote and fairly undeveloped and protected coast-202 line. The model offers a technological tool for research and policy purposes that allows for effective land and water management, risk assessment, and cumulative impact analysis of wetland systems and landscapes.

Florida↗

USGS1997

Deep-ocean field test of methane hydrate formation from a remotely operated vehicle

We have observed the process of formation of clathrate hydrates of methane in experiments conducted on the remotely operated vehicle (ROY) Ventana in the deep waters of Monterey Bay. A tank of methane gas, acrylic tubes containing seawater, and seawater plus various types of sediment were carried down on Ventana to a depth of 910 m where methane gas was injected at the base of the acrylic tubes by bubble stream. Prior calculations had shown that the local hydrographic conditions gave an upper limit of 525 m for the P-T boundary defining methane hydrate formation or dissociation at this site, and thus our experiment took place well within the stability range for this reaction to occur. Hydrate formation in free sea-water occurred within minutes as a buoyant mass of translucent hydrate formed at the gas-water interface. In a coarse sand matrix the Filling of the pore spaces with hydrate turned the sand column into a solidified block, which gas pressure soon lifted and ruptured. In a fine-grained black mud the gas flow carved out flow channels, the walls of which became coated and then filled with hydrate in larger discrete masses. Our experiment shows that hydrate formation is rapid in natural seawater, that sediment type strongly influences the patterns of hydrate formation, and that the use of ROV technologies permits the synthesis of large amounts of hydrate material in natural systems under a variety of conditions so that fundamental research on the stability and growth of these substances is possible.

Geology↗

USGS1997

The multi-channel infrared sea truth radiometric calibrator (MISTRC)

A new multichannel infrared sea truth radiometer has been designed and built to improve validation of satellite-determined sea surface temperature. Horizontal grid polarized filters installed on the shortwave channels are very effective in reducing reflected solar radiation and in improving the noise characteristics. The system uses a continuous (every other cycle) seawater calibration technique. An analysis of the data from its first deployment is presented and recommendations are made for further improving the experimental method.

Journal of Atmospheric and Oceanic Technology↗

USGS2018

Laboratory evaluation of the Sea-Bird Scientific HydroCycle-PO4 phosphate sensor

Sea-Bird Scientific’s HydroCycle-PO 4 phosphate sensor is a single-analyte wet-chemistry sensor designed for in situ environmental monitoring. The unit was evaluated at the U.S. Geological Survey Hydrologic Instrumentation Facility to assess the accuracy of the sensor in solutions with known phosphorous concentration and to test the effects of chromophoric (colored) dissolved organic matter (CDOM) and natural water matrixes on sensor accuracy. Accuracy was tested with three standards: 0.110, 0.174, and 0.260 milligram per liter, as phosphorous (mg/L as P). The 0.110- and 0.260-mg/L standards were made from a dilution of a National Institute of Standards and Technology-traceable phosphate-phosphorous standard with Type I deionized water (DIW). Average measured phosphate concentrations of the tested standards (0.110, 0.174, and 0.260 mg/L as P) in DIW were 0.132, 0.181, and 0.310 mg/L as P, for differences of 20, 4, and 19 percent, respectively. Measured phosphate concentration of a tested standard was biased by the addition of tea water filtered through a 0.45-micrometer pore size filter (filtered tea water [FTW]) simulating the effect of CDOM. An aliquot of the filtered tea solution was sent to a certified environmental laboratory, which reported a less than reporting level (<0.004 mg/L as P) phosphate concentration. True color of the FTW was measured at 380 platinum-cobalt units by using Standard Methods 8025. For this FTW test, the measured phosphate concentration for the clear 0.260 mg/L as P standard averaged 0.366 mg/L as P. This concentration increased to an average of 0.653 mg/L as P with the addition of 10 percent FTW, and to an average of 0.859 mg/L as P with the addition of 20 percent FTW. These test results indicate a positive bias of up to 40 percent of the concentrations of the measured phosphate concentrations when CDOM is present and indicate a proportional increase in an apparent concentration of phosphorus instrument response as CDOM concentration increases.

Open-File Report↗

USGS2012

Archive of single beam and swath bathymetry data collected nearshore of the Gulf Islands National Seashore, Mississippi, from West Ship Island, Mississippi, to Dauphin Island, Alabama: Methods and data report for USGS Cruises 08CCT01 and 08CCT02, July 2008, and 09CCT03 and 09CCT04, June 2009

During the summers of 2008 and 2009 the USGS conducted bathymetric surveys from West Ship Island, Miss., to Dauphin Island, Ala., as part of the Northern Gulf of Mexico (NGOM) Ecosystem Change and Hazard Susceptibility project. The survey area extended from the shoreline out to approximately 2 kilometers and included the adjacent passes (fig. 1). The bathymetry was primarily used to create a topo-bathymetric map and provide a base-level assessment of the seafloor following the 2005 hurricane season. Additionally, these data will be used in conjunction with other geophysical data (chirp and side scan sonar) to construct a comprehensive geological framework of the Mississippi Barrier Island Complex. The culmination of the geophysical surveys will provide baseline bathymetry necessary for scientists to define and interpret seafloor habitat for this area and for scientists to predict future geomorpholocial changes of the islands with respect to climate change, storm impact, and sea-level rise. Furthermore, these data provide information for feasibility of barrier island restoration, particularly in Camille Cut, and for the preservation of historical Fort Massachusetts. For more information refer to http://ngom.usgs.gov/gomsc/mscip/index.html. Since bathymetric surveys have often been conducted for navigational purposes, soundings have traditionally been referenced to a water level datum using tide gages and tide models. Bathymetric measurements referenced to a Global Positioning System (GPS) is a more accurate way of representing water depth and has been implemented in the acquisition and processing procedures for these datasets. Previous single-beam bathymetric studies performed at the USGS Center for Coastal and Marine Science have successfully referenced bathymetric measurements to GPS (DeWitt and others, 2007; Hansen 2008 and 2009). The 2008-2009 bathymetry surveys were conducted as a test to (1) develop acquisition and processing technology utilizing both single beam and swath bathymetry survey methods together, (2) reference both types of measurements to GPS rather than water level, and (3) compare the differences between methods in acquisition and processing. Results of the survey are explained in greater detail within this report. To acquire suitable coverage of the study area in a limited time frame, the seafloor-elevation survey was conducted using three techniques: single-beam bathymetry, interferometric swath bathymetry, and a walking kinematic survey of the island shorelines. All three techniques utilized GPS measurements. Implementation of these techniques was executed concurrently yet independently aboard two research vessels: the RV Survey Cat , a 26-foot (ft) shallow-draft Glacier Bay Coastal Runner, and the 50-ft RV G.K. Gilbert . A portable push buggy with a rigid antenna mount served as the platform for the kinematic shoreline survey. Data from each survey technique was post-processed and edited independently with proper inclusion of the differentially processed external navigation files. The x,y,z components from each method were then combined and the two survey years (2008 and 2009) were merged into one dataset. The 2008 bathymetry data were processed at the USGS Center for Coastal and Marine Science in St. Petersburg, Fla., and the 2009 bathymetry data were processed at the USGS Coastal and Marine Science Center located in Woods Hole, Mass. This report serves as an archive of the processed single beam and interferometric swath bathymetry, outlines the methodology, and reports the results. Data products herein include gridded and interpolated digital depth surfaces, and x,y,z data products for both single beam and interferometric swath bathymetry. Additional files include trackline maps, navigation files, geographic information system (GIS) files, Field Activity Collection System (FACS) logs, and formal Federal Geographic Data Committee (FGDC) metadata. Scanned images of the handwritten FACS logs and digital FACS logs are also provided as PDF files. Refer to the Acronyms page for description of acronyms and abbreviations used in this report or hold the cursor over an acronym for a pop-up explanation. The USGS St. Petersburg Coastal and Marine Science Center assigns a unique identifier to each cruise or field activity. For example, 08CCT01 indicates that the data were collected in 2008 for the Coastal Change and Transport (CCT) study and the data were collected during the first (01) field activity for that project in that calendar year. Refer to http://walrus.wr.usgs.gov/infobank/programs/html/definition/activity.html for a detailed description of the method used to assign the field activity ID. See the digital FACS equipment log for details about the acquisition equipment used. Raw datasets are stored digitally at the USGS St. Petersburg Coastal and Marine Science Center and processed systematically using Novatel's GrafNav version 7.6, SANDS version 3.7, SEA SWATH plus version 3.06.04.03, CARIS HIPS AND SIPS version 3.6, and ESRI ArcGIS version 9.3.1. For more information on processing refer to the Equipment and Processing page. Chirp seismic data were also collected during these surveys and are archived separately.

Mississippi;Alabama↗

USGS2015

A comparison between boat-based and diver-based methods for quantifying coral bleaching

Recent increases in both the frequency and severity of coral bleaching events have spurred numerous surveys to quantify the immediate impacts and monitor the subsequent community response. Most of these efforts utilize conventional diver-based methods, which are inherently time-consuming, expensive, and limited in spatial scope unless they deploy large teams of scientifically-trained divers. In this study, we evaluated the effectiveness of the Along-Track Reef Imaging System (ATRIS), an automated image-acquisition technology, for assessing a moderate bleaching event that occurred in the summer of 2011 in the Florida Keys. More than 100,000 images were collected over 2.7 km of transects spanning four patch reefs in a 3-h period. In contrast, divers completed 18, 10-m long transects at nine patch reefs over a 5-day period. Corals were assigned to one of four categories: not bleached, pale, partially bleached, and bleached. The prevalence of bleaching estimated by ATRIS was comparable to the results obtained by divers, but only for corals > 41 cm in size. The coral size-threshold computed for ATRIS in this study was constrained by prevailing environmental conditions (turbidity and sea state) and, consequently, needs to be determined on a study-by-study basis. Both ATRIS and diver-based methods have innate strengths and weaknesses that must be weighed with respect to project goals.

Florida↗

USGS2002

Transport of sludge-derived organic pollutants to deep-sea sediments at deep water dump site 106

Linear alkylbenzenes (LABs), coprostanol and epi-coprostanol, were detected in sediment trap and bottom sediment samples at the Deep Water Dump Site 106 located 185 km off the coast of New Jersey, in water depths from 2400 to 2900 m. These findings clearly indicate that organic pollutants derived from dumped sludge are transported through the water column and have accumulated on the deep-sea floor. No significant difference in LABs isomeric composition was observed among sludge and samples, indicating little environmental biodegradation of these compounds. LABs and coprostanol have penetrated down to a depth of 6 cm in sediment, indicating the mixing of these compounds by biological and physical processes. Also, in artificially resuspended surface sediments, high concentrations of LABs and coprostanols were detected, implying that sewage-derived organic pollutants initially deposited on the deep-sea floor can be further dispersed by resuspension and transport processes. Small but significant amounts of coprostanol were detected in the sediment from a control site at which no LABs were detected. The coprostanol is probably derived from feces of marine mammals and sea birds and/or from microbial or geochemical transformations of cholesterol. Polcyclic aromatic hydrocarbons (PAHs) in sediment trap samples from the dump site were largely from the sewage sludge and had a mixed petroleum and pyrogenic composition. In contrast, PAHs in sediments in the dump site were mainly pyrogenic; contributed either from sewage sludge or from atmospheric transport to the overlying waters. & 1994 American Chemical Society.

Environmental Science & Technology↗

USGS1999

Fossils, rocks, and time

We study our Earth for many reasons: to find water to drink or oil to run our cars or coal to heat our homes, to know where to expect earthquakes or landslides or floods, and to try to understand our natural surroundings. Earth is constantly changing--nothing on its surface is truly permanent. Rocks that are now on top of a mountain may once have been at the bottom of the sea. Thus, to understand the world we live on, we must add the dimension of time. We must study Earth's history. When we talk about recorded history, time is measured in years, centuries, and tens of centuries. When we talk about Earth history, time is measured in millions and billions of years. Time is an everyday part of our lives. We keep track of time with a marvelous invention, the calendar, which is based on the movements of Earth in space. One spin of Earth on its axis is a day, and one trip around the Sun is a year. The modern calendar is a great achievement, developed over many thousands of years as theory and technology improved. People who study Earth's history also use a type of calendar, called the geologic time scale. It looks very different from the familiar calendar. In some ways, it is more like a book, and the rocks are its pages. Some of the pages are torn or missing, and the pages are not numbered, but geology gives us the tools to help us read this book.

Report↗

USGS1993

Fossils, rocks, and time

We study out Earth for many reasons: to find water to drink or oil to run our cars or coal to heat our homes, to know where to expect earthquakes or landslides or floods, and to try to understand our natural surroundings. Earth is constantly changing--nothing on its surface is truly permanent. Rocks that are not on top of a mountain may once have been on the bottom of the sea. Thus, to understand the world we live on, we must add the dimension of time. We must study Earth's history. When we talk about recorded history, time is measured in years, centuries, and tens of centuries. When we talk about Earth history, time is measured in millions and billions of years. Time is an everyday part of our lives. We keep track of time with a marvelous invention, the calendar, which is based on the movements of the Earth in space. One spin of Earth on its axis is a day, and one trip around the sun is a year. The modern calendar is a great achievement, developed over many thousands of years as theory and technology improved. People who study Earth's history also use a type of calendar, called the geologic time scale. It looks very different from the familiar calendar. In some ways, it is more like a book, and the rocks are its pages. Some of the pages are torn or missing, and the pages are not numbered, but geology gives us the tools to help us read this book.

General Interest Publication↗

USGS2010

Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear

The polar bear has become the flagship species in the climate-change discussion. However, little is known about how past climate impacted its evolution and persistence, given an extremely poor fossil record. Although it is undisputed from analyses of mitochondrial (mt) DNA that polar bears constitute a lineage within the genetic diversity of brown bears, timing estimates of their divergence have differed considerably. Using next-generation sequencing technology, we have generated a complete, high-quality mt genome from a stratigraphically validated 130,000- to 110,000-year-old polar bear jawbone. In addition, six mt genomes were generated of extant polar bears from Alaska and brown bears from the Admiralty and Baranof islands of the Alexander Archipelago of southeastern Alaska and Kodiak Island. We show that the phylogenetic position of the ancient polar bear lies almost directly at the branching point between polar bears and brown bears, elucidating a unique morphologically and molecularly documented fossil link between living mammal species. Molecular dating and stable isotope analyses also show that by very early in their evolutionary history, polar bears were already inhabitants of the Artic sea ice and had adapted very rapidly to their current and unique ecology at the top of the Arctic marine food chain. As such, polar bears provide an excellent example of evolutionary opportunism within a widespread mammalian lineage.

PNAS↗

USGS2014

Northwest

Key Messages 1. Changes in the timing of streamflow related to changing snowmelt are already observed and will continue, reducing the supply of water for many competing demands and causing far-reaching ecological and socioeconomic consequences. 2. In the coastal zone, the effects of sea level rise, erosion, inundation, threats to infrastructure and habitat, and increasing ocean acidity collectively pose a major threat to the region. 3. The combined impacts of increasing wildfire, insect outbreaks, and tree diseases are already causing widespread tree die-off and are virtually certain to cause additional forest mortality by the 2040s and long-term transformation of forest landscapes. Under higher emissions scenarios, extensive conversion of subalpine forests to other forest types is projected by the 2080s. 4. While the agriculture sector’s technical ability to adapt to changing conditions can offset some adverse impacts of a changing climate, there remain critical concerns for agriculture with respect to costs of adaptation, development of more climate resilient technologies and management, and availability and timing of water.

Idaho, Oregon, Washington↗

USGS2011

The role of the Everglades Mangrove Ecotone Region (EMER) in regulating nutrient cycling and wetland productivity in South Florida

The authors summarize the main findings of the Florida Coastal Everglades Long-Term Ecological Research (FCE-LTER) program in the EMER, within the context of the Comprehensive Everglades Restoration Plan (CERP), to understand how regional processes, mediated by water flow, control population and ecosystem dynamics across the EMER landscape. Tree canopies with maximum height <3 m cover 49% of the EMER, particularly in the SE region. These scrub/dwarf mangroves are the result of a combination of low soil phosphorus (P < 59 μg P g dw −1 ) in the calcareous marl substrate and long hydroperiod. Phosphorus limits the EMER and its freshwater watersheds due to the lack of terrigenous sediment input and the phosphorus-limited nature of the freshwater Everglades. Reduced freshwater delivery over the past 50 years, combined with Everglades compartmentalization and a 10 cm rise in coastal sea level, has led to the landward transgression (∼1.5 km in 54 years) of the mangrove ecotone. Seasonal variation in freshwater input strongly controls the temporal variation of nitrogen and P exports (99%) from the Everglades to Florida Bay. Rapid changes in nutrient availability and vegetation distribution during the last 50 years show that future ecosystem restoration actions and land use decisions can exert a major influence, similar to sea level rise over the short term, on nutrient cycling and wetland productivity in the EMER.

Florida↗

USGS2019

Radiometric calibration of a non-imaging airborne spectrometer to measure the Greenland ice sheet surface

Methods to radiometrically calibrate a non-imaging airborne visible-to-shortwave infrared (VSWIR) spectrometer to measure the Greenland ice sheet surface are presented. Airborne VSWIR measurement performance for bright Greenland ice and dark bare rock/soil targets is compared against the MODerate resolution atmospheric TRANsmission (MODTRAN ® ) radiative transfer code (version 6.0), and a coincident Landsat 8 Operational Land Imager (OLI) acquisition on 29 July 2015 during an in-flight radiometric calibration experiment. Airborne remote sensing flights were carried out in northwestern Greenland in preparation for the Ice, Cloud, and land Elevation Satellite 2 (ICESat-2) laser altimeter mission. A total of nine science flights were conducted over the Greenland ice sheet, sea ice, and open-ocean water. The campaign's primary purpose was to correlate green laser pulse penetration into snow and ice with spectroscopic-derived surface properties. An experimental airborne instrument configuration that included a nadir-viewing (looking downward at the surface) non-imaging Analytical Spectral Devices (ASD) Inc. spectrometer that measured upwelling VSWIR (0.35 to 2.5 µ m) spectral radiance ( W m - 2 sr - 1 µ m - 1 "> W m − 2 sr − 1 µ m − 1 ) in the two-color Slope Imaging Multi-polarization Photon-Counting Lidar's (SIMPL) ground instantaneous field of view, and a zenith-viewing (looking upward at the sky) ASD spectrometer that measured VSWIR spectral irradiance (W m −2 nm −1 ) was flown. National Institute of Standards and Technology (NIST) traceable radiometric calibration procedures for laboratory, in-flight, and field environments are described in detail to achieve a targeted VSWIR measurement requirement of within 5 % to support calibration/validation efforts and remote sensing algorithm development. Our MODTRAN predictions for the 29 July flight line over dark and bright targets indicate that the airborne nadir-viewing spectrometer spectral radiance measurement uncertainty was between 0.6 % and 4.7 % for VSWIR wavelengths (0.4 to 2.0 µ m) with atmospheric transmittance greater than 80 %. MODTRAN predictions for Landsat 8 OLI relative spectral response functions suggest that OLI is measuring 6 % to 16 % more top-of-atmosphere (TOA) spectral radiance from the Greenland ice sheet surface than was predicted using apparent reflectance spectra from the nadir-viewing spectrometer. While more investigation is required to convert airborne VSWIR spectral radiance into atmospherically corrected airborne surface reflectance, it is expected that airborne science flight data products will contribute to spectroscopic determination of Greenland ice sheet surface optical properties to improve understanding of their potential influence on ICESat-2 measurements.

Atmospheric Measurement Techniques↗

USGS2021

New insights into organic matter accumulation from high-resolution geochemical analysis of a black shale: Middle and Upper Devonian Horn River Group, Canada

Organic matter (OM) accumulation in organic matter-rich mudstones, or black shales, is generally recognized to be controlled by combinations of bioproductivity, preservation, and dilution. However, specific triggers of OM deposition in these formations are commonly difficult to identify with geochemical proxies, in part because of feedbacks that cause geochemical proxies for these controls to vary synchronously. This apparent synchronicity is partly a function of sample spacing, commonly at decimeter to meter intervals, which may represent longer periods of time than is required for the development of feedbacks. Higher resolution data sets may be required to fully interpret OM accumulation. This study applies a novel combination of technologies to develop a high-resolution geochemical data set, integrating energy-dispersive X-ray fluorescence (EDXRF) and infrared imagery analyses, to record proxies for redox conditions, bioproductivity, and clastic and carbonate dilution in millimeter-resolution profiles of 133 core slabs from the Middle and Upper Devonian Horn River shale in the Western Canada Sedimentary Basin, which provides decadal-scale temporal resolution. A comparison to a more coarsely sampled data set from the same core results in substantially different interpretations of variations in bioproductivity, redox, and dilution proxies. Stratigraphic distributions of organic matter accumulation patterns (bioproductivity-control, siliciclastic/carbonate-dilution, and redox conditions-control) show that organic enrichment events were highly varied during deposition of the shale and were closely related to second- and third-order sea-level changes. High-resolution profiles indicate that bioproductivity was the predominant trigger for organic matter accumulation in a second-order highstand, particularly during deposition of third-order transgressive systems tracts. Organic matter accumulation was largely controlled by dilution from either carbonate or clastic sediments in a second-order lowstand. Bioproductivity-redox feedbacks developed on timescales of decades to centuries.

British Columbia, Northwest Territories↗

USGS2018

Genetics

In the current context of environmental changes, it is easy to see how extrinsic factors, such as shifts in sea surface temperature, food availability and accumulation of pollutants, can impact the health of marine mammals. However, intrinsic factors, including the genetic constitution of an individual, are also largely responsible for shaping health, particularly in terms of immune system effectiveness. In the previous edition of this book, the chapter on genetics thoroughly addressed the techniques available for identification of species, populations, stocks and individuals, studying social organization, and determining the relationships among individuals in a group. We have written the current chapter with an emphasis on how each individual’s genetic constitution and the prevalence of particular genetic variants is relevant to marine mammal health and disease. The chapter first presents a brief conceptual framework for understanding how genetics shape health and disease. We next outline common genetic techniques and current tools and technologies that are emerging in marine mammal health studies. Finally, the scope, pitfalls and limitations of these tools are discussed.

Book chapter↗

USGS2022

Human and ecosystem health in coastal systems

U.S. coastal economies and communities are facing an unprecedented and growing number of impacts to coastal ecosystems including beach and fishery closures, harmful algal blooms, loss of critical habitat, as well as shoreline damage. This paper synthesizes our present understanding of the dynamics of human and ecosystem health in coastal systems with a focus on the need to better understand nearshore physical process interactions with coastal pollutants and ecosystems (e.g. fate and transport, circulation, depositional environment, climate change). It is organized around two major topical areas and six subtopic areas: 1) Identifying and mitigating coastal pollutants, including fecal pollution, nutrients and harmful algal blooms, and microplastics; and 2) Resilient coastal ecosystems, which focuses on coastal fisheries, shellfish and natural and nature-based features (NNBF). Societal needs and the tools and technologies needed to address them are discussed for each subtopic. Recommendations for scientific research, observations, community engagement, and policies aim to help prioritize future research and investments. A better understanding of coastal physical processes and interactions with coastal pollutants and resilient ecosystems (e.g. fate and transport, circulation, depositional environment, climate change) is a critical need. Other research recommendations include the need to quantify potential threats to human and ecosystem health through accurate risk assessments and to quantify the resulting hazard risk reduction of natural and nature-based features; improve pollutant and ecosystem impacts forecasting by integrating frequent and new data points into existing and novel models; collect environmental data to calibrate and validate models to predict future impacts on coastal ecosystems and their evolution due to anthropogenic stressors (land-based pollution, overfishing, coastal development), climate change, and sea level rise; and develop lower cost and rapid response tools to help coastal managers better respond to pollutant and ecosystem threats.

Shore and Beach↗