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USGS2016

Dynamic reusable workflows for ocean science

Digital catalogs of ocean data have been available for decades, but advances in standardized services and software for catalog search and data access make it now possible to create catalog-driven workflows that automate — end-to-end — data search, analysis and visualization of data from multiple distributed sources. Further, these workflows may be shared, reused and adapted with ease. Here we describe a workflow developed within the US Integrated Ocean Observing System (IOOS) which automates the skill-assessment of water temperature forecasts from multiple ocean forecast models, allowing improved forecast products to be delivered for an open water swim event. A series of Jupyter Notebooks are used to capture and document the end-to-end workflow using a collection of Python tools that facilitate working with standardized catalog and data services. The workflow first searches a catalog of metadata using the Open Geospatial Consortium (OGC) Catalog Service for the Web (CSW), then accesses data service endpoints found in the metadata records using the OGC Sensor Observation Service (SOS) for in situ sensor data and OPeNDAP services for remotely-sensed and model data. Skill metrics are computed and time series comparisons of forecast model and observed data are displayed interactively, leveraging the capabilities of modern web browsers. The resulting workflow not only solves a challenging specific problem, but highlights the benefits of dynamic, reusable workflows in general. These workflows adapt as new data enters the data system, facilitate reproducible science, provide templates from which new scientific workflows can be developed, and encourage data providers to use standardized services. As applied to the ocean swim event, the workflow exposed problems with two of the ocean forecast products which led to improved regional forecasts once errors were corrected. While the example is specific, the approach is general, and we hope to see increased use of dynamic notebooks across the geoscience domains.

Journal of Marine Science and Engineering↗

USGS1967

The Amazon, measuring a mighty river

The Amazon, the world's largest river, discharges enough water into the sea each day to provide fresh water to the City of New York for over 9 years. Its flow accounts for about 15 percent of all the fresh water discharged into the oceans by all the rivers of the world. By comparison, the Amazon's flow is over 4 times that of the Congo River, the world's second largest river. And it is 10 times that of the Mississippi, the largest river on the North American Continent.

Amazon River↗

USGS2011

Development of flood-inundation maps for the West Branch Susquehanna River near the Borough of Jersey Shore, Lycoming County, Pennsylvania

Streamflow data, water-surface-elevation profiles derived from a Hydrologic Engineering Center River Analysis System hydraulic model, and geographical information system digital elevation models were used to develop a set of 18 flood-inundation maps for an approximately 5-mile reach of the West Branch Susquehanna River near the Borough of Jersey Shore, Pa. The inundation maps were created by the U.S. Geological Survey in cooperation with the Susquehanna River Basin Commission and Lycoming County as part of an ongoing effort by the National Oceanic and Atmospheric Administration's National Weather Service to focus on continued improvements to the flood forecasting and warning abilities in the Susquehanna River Basin and to modernize flood-forecasting methodologies. The maps, ranging from 23.0 to 40.0 feet in 1-foot increments, correspond to river stage at the U.S. Geological Survey streamgage 01549760 at Jersey Shore. The electronic files used to develop the maps were provided to the National Weather Service for incorporation into their Advanced Hydrologic Prediction Service website. The maps are displayed on this website, which serves as a web-based floodwarning system, and can be used to identify areas of predicted flood inundation associated with forecasted flood-peak stages. During times of flooding or predicted flooding, these maps can be used by emergency managers and the public to take proactive steps to protect life and reduce property damage caused by floods.

Pennsylvania↗

USGS1983

Clay mineral formation and transformation in rocks and soils

Three mechanisms for clay mineral formation (inheritance, neoformation, and transformation) operating in three geological environments (weathering, sedimentary, and diagenetic-hydrothermal) yield nine possibilities for the origin of clay minerals in nature. Several of these possibilities are discussed in terms of the rock cycle. The mineralogy of clays neoformed in the weathering environment is a function of solution chemistry, with the most dilute solutions favoring formation of the least soluble clays. After erosion and transportation, these clays may be deposited on the ocean floor in a lateral sequence that depends on floccule size. Clays undergo little reaction in the ocean, except for ion exchange and the neoformation of smectite; therefore, most clays found on the ocean floor are inherited from adjacent continents. Upon burial and heating, however, dioctahedral smectite reacts in the diagenetic environment to yield mixed-layer illite-smectite, and finally illite. With uplift and weathering, the cycle begins again. Refs.

Philosophical Transactions of the Royal Society A:↗

USGS2000

Archive of water gun subbottom data collected during USGS cruise SEAX 96004, New York Bight, 1 May - 9 June 1996

Beginning in 1995, the USGS, in cooperation with the U.S Army Corps of Engineers (USACE), New York District, began a program to generate reconnaissance maps of the sea floor offshore of the New York-New Jersey metropolitan area, one of the most populated coastal regions of the United States. The goal of this mapping program is to provide a regional synthesis of the sea-floor environment, including a description of sedimentary environments, sediment texture, seafloor morphology, and geologic history to aid in understanding the impacts of anthropogenic activities, such as ocean dumping. This mapping effort differs from previous studies of this area by obtaining digital, sidescan sonar images that cover 100 percent of the sea floor. This investigation was motivated by the need to develop an environmentally acceptable solution for the disposal of dredged material from the New York - New Jersey Port, by the need to identify potential sources of sand for renourishment of the southern shore of Long island, and by the opportunity to develop a better understanding of the transport and long-term fate of contaminants by investigations of the present distribution of materials discharged into the New York Bight over the last 100+ years (Schwab and others, 1997). Data collected in 1996, USGS cruise SEAX 96004, augments data collected in 1995 with sidescan sonar and seismic reflection data collected within the New York Bight Apex region. This report is an archive of the water gun seismic reflection data collected in 1996.

Open-File Report↗

USGS2001

Archive of water gun subbottom data collected during USGS cruise SEAX 95007 New York Bight, 7-25, May 1995

New Jersey, New York↗

USGS2009

Saltwater intrusion in coastal regions of North America

Saltwater has intruded into many of the coastal aquifers of the United States, Mexico, and Canada, but the extent of saltwater intrusion varies widely among localities and hydrogeologic settings. In many instances, the area contaminated by saltwater is limited to small parts of an aquifer and to specific wells and has had little or no effect on overall groundwater supplies; in other instances, saltwater contamination is of regional extent and has resulted in the closure of many groundwater supply wells. The variability of hydrogeologic settings, three-dimensional distribution of saline water, and history of groundwater withdrawals and freshwater drainage has resulted in a variety of modes of saltwater intrusion into coastal aquifers. These include lateral intrusion from the ocean; upward intrusion from deeper, more saline zones of a groundwater system; and downward intrusion from coastal waters. Saltwater contamination also has occurred along open boreholes and within abandoned, improperly constructed, or corroded wells that provide pathways for vertical migration across interconnected aquifers. Communities within the coastal regions of North America are taking actions to manage and prevent saltwater intrusion to ensure a sustainable source of groundwater for the future. These actions can be grouped broadly into scientific monitoring and assessment, engineering techniques, and regulatory approaches.

Hydrogeology Journal↗

USGS1999

Archive of 15 cubic inch water gun data collected during USGS Cruise ALPH98013, New York Bight, 10-22, September, 1998

Background This CD-ROM contains copies of the navigation and field water gun subbottom data collected aboard the F/V Alpha & Omega II. The USGS Cruise ALPH98013 was conducted from 10-22 September, 1998, and is a collaborative involving the U.S Army Corps of Engineers, New York District and the United States Geological SurveyCoastal and Marine Geology Program, Woods Hole Field Center. In 1995, the USGS, in cooperation with the U.S Army Corps of Engineers (USACOE), New York District, began a program to generate reconnaissance maps of the sea floor offshore of the New York-New Jersey metropolitan area, one of the most populated coastal regions of the United States. The goal of this mapping program is to provide a regional synthesis of the sea-floor environment, including a description of sedimentary environments, sediment texture, sea-floor morphology, and geologic history to aid in understanding the impacts of anthropogenic activities, such as ocean dumping. This mapping effort differs from previous studies of this area by obtaining digital, sidescan sonar images that cover 100 percent of the sea floor. This investigation was motivated by the need to develop an environmentally acceptable solution for the disposal of dredged material from the New York - New Jersey Port, by the need to identify potential sources of sand for renourishment of the southern shore of Long island, and by the opportunity to develop a better understanding of the transport and long-term fate of contaminants by investigations of the present distribution of materials discharged into the New York Bight over the last 100+ years (Schwab and others, 1997). Sidescan-sonar data collected during USGS Cruises Seax95007 and Seax96004 (May 1995 and May 1996, respectively) were digitally mosaicked to provide a base suitable for use in Geographic Information Systems of the New York Bight Apex region. During USGS Cruise Alph98013, supplemental sidescan sonar and seismic reflection data were collected within the New York Bight Apex region, primarily to augment the seismic reflection portion of the mapping project. Additional sidescan sonar and seismic reflection data were collected east of the Seax95007 and Seax96004 survey areas. These data abut sidescan sonar and seismic reflection data collected off the Southern Long Island shoreline during USGS Cruises Dian96040, Dian97011, and Dian97032 (September 1996, May 1997, October 1997, respectively).

Open-File Report↗

USGS2009

Monitoring land use on military installations

The US Geological Survey's Land Cover Trends is a research projects aimed to understand the rates, trends, causes, and consequences of contemporary US land use and land-cover change. The project is using the EPA Level III eco-regions as a geographic framework to process geospatial data collected between 1973 and 2000 to characterize ecosystem responses to land-use changes. The results are expected to be used for collaborative environmental change consequences research with various partners including the National Science Foundation, the National Oceanic and Atmospheric Administration, and the US Fish and Wildlife Service. The Land Cover project can provide geographic understanding of the state of the nation's ecosystems. The project is scheduled to be completed by 2010 and expected to provide an unbiased, national synthesis of land-cover changes.

Military Engineer↗

USGS2015

Bathymetry of the Wilderness breach at Fire Island, New York, June 2013

The U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center in St. Petersburg, Florida, collaborated with the U.S. Army Corps of Engineers Field Research Facility in Duck, North Carolina, to collect shallow water bathymetric data of the Wilderness breach on Fire Island, New York, in June 2013. The breach formed in October 2012 during Hurricane Sandy, and the USGS is involved in a post-Sandy effort to map, monitor, and model the morphologic evolution of the breach as part of Hurricane Sandy Supplemental Project GS2-2B: Linking Coastal Vulnerability and Process, Fire Island. This publication includes a bathymetric dataset of the breach and the adjacent nearshore on the ocean side of the island. The objective of the data collection and analysis is to map the bathymetry of the primary breach channel, ebb shoal, and nearshore bar system.

New York↗

USGS2006

Coastal monitoring of the May 2005 dredge disposal offshore of Ocean Beach, San Francisco, Calif.

Ocean Beach, California, contains an erosion hot spot in the shadow of the San Francisco ebb tidal delta south of Sloat Boulevard that threatens valuable public infrastructure as well as the safe recreational use of the beach. In an effort to reduce the erosion at this location and avoid hazardous navigation conditions at the current disposal site (SF-8), a new plan for the management of sediment dredged annually from the main shipping channel at the mouth of Francisco Bay was implemented in May 2005 by the United States Army Corps of Engineers, San Francisco District (COE). The objective for COE was to perform a test dredge disposal of ~230,000 m 3 (300,000 yd 3 ) of sand just offshore of the erosion hot spot, in depths between approximately 9 and 14 m. This disposal site was chosen because it is in a location where the strong tidal currents associated with the mouth of San Francisco Bay and waves can potentially feed sediment toward the littoral zone in the reach of the beach that is experiencing critical erosion. The onshore migration of sediment from the target disposal location might feed the primary longshore bar or the nearshore zone, and provide a buffer to erosion that peaks during winter months when large waves impact the region. The U.S. Geological Survey (USGS), in collaboration with the Sea Floor Mapping Lab (SFML) of California State University, Monterey Bay, monitored the initial bathymetric evolution of the test dredge disposal site and the adjacent coastal region from May 2005 to November 2005. This paper reports on this monitoring effort and assesses the short-term coastal response.

California↗

USGS2013

Potential effects of deepening the St. Johns River navigation channel on saltwater intrusion in the surficial aquifer system, Jacksonville, Florida

The U.S. Army Corps of Engineers (USACE) has proposed dredging a 13-mile reach of the St. Johns River navigation channel in Jacksonville, Florida, deepening it to depths between 50 and 54 feet below North American Vertical Datum of 1988. The dredging operation will remove about 10 feet of sediments from the surficial aquifer system, including limestone in some locations. The limestone unit, which is in the lowermost part of the surficial aquifer system, supplies water to domestic wells in the Jacksonville area. Because of density-driven hydrodynamics of the St. Johns River, saline water from the Atlantic Ocean travels upstream as a saltwater “wedge” along the bottom of the channel, where the limestone is most likely to be exposed by the proposed dredging. A study was conducted to determine the potential effects of navigation channel deepening in the St. Johns River on salinity in the adjacent surficial aquifer system. Simulations were performed with each of four cross-sectional, variable-density groundwater-flow models, developed using SEAWAT, to simulate hypothetical changes in salinity in the surficial aquifer system as a result of dredging. The cross-sectional models were designed to incorporate a range of hydrogeologic conceptualizations to estimate the effect of uncertainty in hydrogeologic properties. The cross-sectional models developed in this study do not necessarily simulate actual projected conditions; instead, the models were used to examine the potential effects of deepening the navigation channel on saltwater intrusion in the surficial aquifer system under a range of plausible hypothetical conditions. Simulated results for modeled conditions indicate that dredging will have little to no effect on salinity variations in areas upstream of currently proposed dredging activities. Results also indicate little to no effect in any part of the surficial aquifer system along the cross section near River Mile 11 or in the water-table unit along the cross section near River Mile 8. Salinity increases of up to 4.0 parts per thousand (ppt) were indicated by the model incorporating hydrogeologic conceptualizations with both a semiconfining bed over the limestone unit and a preferential flow layer within the limestone along the cross section near River Mile 8. Simulated increases in salinity greater than 0.2 ppt in this area were generally limited to portions of the limestone unit within about 75 feet of the channel on the north side of the river. The potential for saltwater to move from the river channel to the surficial aquifer system is limited, but may be present in areas where the head gradient from the aquifer to the river is small or negative and the salinity of the river is sufficient to induce density-driven advective flow into the aquifer. In some areas, simulated increases in salinity were exacerbated by the presence of laterally extensive semiconfining beds in combination with a high-conductivity preferential flow zone in the limestone unit of the surficial aquifer system and an upgradient source of saline water, such as beneath the salt marshes near Fanning Island. The volume of groundwater pumped in these areas is estimated to be low; therefore, saltwater intrusion will not substantially affect regional water supply, although users of the surficial aquifer system east of Dames Point along the northern shore of the river could be affected. Proposed dredging operations pose no risk to salinization of the Floridan aquifer system; in the study area, the intermediate confining unit ranges in thickness from more than 300 to about 500 feet and provides sufficient hydraulic separation between the surficial and Floridan aquifer systems.

Florida↗

USGS1969

Our changing continent

Where were the land areas and oceans of the North American Continent one million years ago, compared to our present geography? Was North America always about the same size and shape as it is today? To answer these questions, we must construct maps of the lands and sea that existed during the past ages. This process of reconstructing ancient geography is called paleogeography (from the Greek word "palaios," meaning ancient).

Monograph↗

USGS2025

A 700-year rupture sequence of great eastern Aleutian earthquakes from tsunami modeling of stratigraphic records

Great Aleutian underthrusting earthquakes produced destructive tsunamis impacting Hawaiʻi in 1946 and 1957. Prior modeling of the 1957 tsunami deposit and runup records on eastern Aleutian and Hawaiian Islands jointly with tide-gauge observations across the Pacific Ocean constrained a rupture model with shallow slip up to 26 m along 600 km of the plate boundary. Here we implement this modeling approach to older deposits and show alternating deep and shallow megathrust slip up to 26, 32, and 22 m for great earthquakes along the same segment in the 18 th , 15 th , and 14 th centuries. All three modeled prehistoric Aleutian earthquakes produce tsunami inundation in Hawaiʻi with the most severe, 14 th century event having impacts exceeding the 1957 event. The along-dip variability of these four ruptures spanning seven centuries provides insights on earthquake cycles for engineering design and hazard assessment. The 15 th century and 1957 rupture models provide evidence for recurrence of tsunami earthquakes, which can produce disproportionately large tsunamis for a given moment magnitude due to reduced rigidity in the shallow megathrust. The 14 th and 18 th century events likely ruptured deeper regions that did not slip in 1957, suggesting potential for corresponding deeper failure in the next great eastern Aleutian earthquake.

Alaska, Hawaii↗

USGS2009

Preliminary assessment of vertical stability and gravel transport along the Umpqua River, southwestern Oregon

This report addresses physical channel issues related to instream gravel mining on the Umpqua River and its two primary tributaries, the North and South Umpqua Rivers. This analysis constitutes a “Phase I” investigation, as designated by an interagency team cochaired by the U.S. Army Corps of Engineers, Portland District, and the Oregon Department of State Lands to address instream gravel mining issues across Oregon. Phase I analyses rely primarily on existing datasets and cursory analysis to determine the vertical stability of a channel to ascertain whether a particular river channel is aggrading, degrading, or at equilibrium. Additionally, a Phase I analysis identifies other critical issues or questions pertinent to physical channel conditions that may be related to instream gravel mining activities. This analysis can support agency permitting decisions as well as possibly indicating the need for additional studies. This specific analysis focuses on the mainstem Umpqua River from the Pacific Ocean at River Mile (RM) 0 to the confluence of the North and South Umpqua Rivers (at RM 111.8), as well as the lower 29 mi of the North Umpqua River and the lower 80 mi of the South Umpqua River (fig. 1). It is within these reaches where mining of gravel bars for aggregate has been most prevalent.

Oregon↗

USGS2017

Biological and ecological science for Florida—The Sunshine State

Florida is rich in sunshine and other natural resources essential to the State's economy. More than 100 million tourists visit Florida's beaches, wetlands, forests, oceans, lakes, and streams where they generate billions of dollars and sustain more than a million jobs. Florida also provides habitat for several thousand freshwater and marine fish, mammals, birds, and other wildlife that are viewed, hunted, or fished, or that provide valuable ecological services. Fertile soils and freshwater supplies support agriculture and forest industries and generate more than $8 billion of revenue annually and sustain thousands of jobs.

Florida↗

USGS2010

Strategic Science for Coral Ecosystems 2007-2011

Shallow and deep coral ecosystems are being imperiled by a combination of stressors. Climate change, unsustainable fishing practices, and disease are transforming coral communities at regional to global scales. At local levels, excessive amounts of sediments, nutrients, and contaminants are also impacting the many benefits that healthy coral ecosystems provide. This Plan, Strategic Science for Coral Ecosystems, describes the information needs of resource managers and summarizes current research being conducted by U.S. Geological Survey (USGS) scientists and partners. It outlines important research actions that need to be undertaken over the next five years to achieve more accurate forecasting of future conditions and develop more effective decision-support tools to adaptively manage coral ecosystems. The overarching outcome of this Plan, if fully implemented, would be in transferring relevant knowledge to decision-makers, enabling them to better protect and sustain coral ecosystem services. These services include sources of food, essential habitat for fisheries and protected species, protection of coastlines from wave damage and erosion, recreation, and cultural values for indigenous communities. The USGS has a long history of research and monitoring experience in studying ancient and living coral communities and serving many stakeholders. The research actions in this Plan build on the USGS legacy of conducting integrated multidisciplinary science to address complex environmental issues. This Plan is responsive to Federal legislation and authorities and a variety of external and internal drivers that include the President's Ocean Action Plan, the recommendations of the Coral Reef Task Force, the information needs of Bureaus in the Department of Interior, the USGS Bureau Science Strategy (USGS 2007) and the formal plans of several USGS Programs. To achieve this Plan's desired outcomes will require increased funding and more effective coordination and collaboration among USGS managers and scientists within a national and international framework of partnerships in coral ecosystem science.

Circular↗

USGS2015

Completion of the 2011 National Land Cover Database for the conterminous United States – Representing a decade of land cover change information

The National Land Cover Database (NLCD) provides nationwide data on land cover and land cover change at the native 30-m spatial resolution of the Landsat Thematic Mapper (TM). The database is designed to provide five-year cyclical updating of United States land cover and associated changes. The recent release of NLCD 2011 products now represents a decade of consistently produced land cover and impervious surface for the Nation across three periods: 2001, 2006, and 2011 (Homer et al., 2007; Fry et al., 2011). Tree canopy cover has also been produced for 2011 (Coluston et al., 2012; Coluston et al., 2013). With the release of NLCD 2011, the database provides the ability to move beyond simple change detection to monitoring and trend assessments. NLCD 2011 represents the latest evolution of NLCD products, continuing its focus on consistency, production, efficiency, and product accuracy. NLCD products are designed for widespread application in biology, climate, education, land management, hydrology, environmental planning, risk and disease analysis, telecommunications and visualization, and are available for no cost at http://www.mrlc.gov. NLCD is produced by a Federal agency consortium called the Multi-Resolution Land Characteristics Consortium (MRLC) (Wickham et al., 2014). In the consortium arrangement, the U.S. Geological Survey (USGS) leads NLCD land cover and imperviousness production for the bulk of the Nation; the National Oceanic and Atmospheric Administration (NOAA) completes NLCD land cover for the conterminous U.S. (CONUS) coastal zones; and the U.S. Forest Service (USFS) designs and produces the NLCD tree canopy cover product. Other MRLC partners collaborate through resource or data contribution to ensure NLCD products meet their respective program needs (Wickham et al., 2014).

Conterminous United States↗