SEARCH · Search USGS

Results for “Nature Methods”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 145 records · Page 8Linked to original sources

USGS1998

In situ determination of particle friction angles of fluvial gravels

Particle friction angles Φ represent the physical resistance to initial movement of a sediment particle and are therefore useful for relating initiation of motion to particular flows. We determined over 8000 friction angle values at five natural rivers by applying a new method that uses a digital load cell to directly measure the force F d required to pivot or slide a particle out of its natural resting place. Within each site, median Φ values were very similar to previously reported relations, yet different enough between sites that a location-general predictive empirical relation would produce errors in Φ of ±10 degrees for D i / K s > 1. Furthermore, within a D i / K s class at a given site the range in Φ was as large as 80°, much greater than the range of median values between classes for natural sediment mixtures. Using estimates of τ c * from extensive bed load measurements made by Andrews and Erman [1986] at Sagehen Creek and the in situ Φ measurements made in this study together with a theoretical model developed by Wiberg and Smith [1987], we show that Φ measurements made with this new method can be used to accurately predict τ c * for natural, water-worked sediments. Additionally, these results confirm that a Φ value ≪Φ 50 is more appropriate for predicting τ c * of a given size class.

Water Resources Research↗

USGS2012

Advances in the simulation and automated measurement of well-sorted granular material: 2. Direct measures of particle properties

1. In this, the second of a pair of papers on the structure of well-sorted natural granular material (sediment), new methods are described for automated measurements from images of sediment, of: 1) particle-size standard deviation (arithmetic sorting) with and without apparent void fraction; and 2) mean particle size in material with void fraction. A variety of simulations of granular material are used for testing purposes, in addition to images of natural sediment. Simulations are also used to establish that the effects on automated particle sizing of grains visible through the interstices of the grains at the very surface of a granular material continue to a depth of approximately 4 grain diameters and that this is independent of mean particle size. Ensemble root-mean squared error between observed and estimated arithmetic sorting coefficients for 262 images of natural silts, sands and gravels (drawn from 8 populations) is 31%, which reduces to 27% if adjusted for bias (slope correction between observed and estimated values). These methods allow non-intrusive and fully automated measurements of surfaces of unconsolidated granular material. With no tunable parameters or empirically derived coefficients, they should be broadly universal in appropriate applications. However, empirical corrections may need to be applied for the most accurate results. Finally, analytical formulas are derived for the one-step pore-particle transition probability matrix, estimated from the image's autocorrelogram, from which void fraction of a section of granular material can be estimated directly. This model gives excellent predictions of bulk void fraction yet imperfect predictions of pore-particle transitions.

Journal of Geophysical Research F: Earth Surface↗

USGS1976

Measurement of "turbidity" and related characteristics of natural waters

The U.S. Geological Survey, Water Resources Division has adopted the following principles to be used in selecting methods for the measurement of light transmitting characteristics of natural waters: (1) standard instruments and methods are to be adopted to measure and report in optical units, avoiding ' turbidity ' as a quantitative measure; (2) reporting of ' turbidity ' in JTU 's, Hellige units, severity, or NTU 's will be phased out; (3) the basis for estimations of sediment concentrations based on light measurements must be documented adequately; and (4) use of transparency measurement by Secchi disk is not changed, although light transmittance may prove to be more precise means of obtaining the same information. A schedule has been established to implement new methods beginning October 1, 1976, and with the transition to be completed at all stations by October 1, 1977. Provisions are provided to meet requirements of cooperators who have legal requirements for ' turbidity ' data. (Woodard-USGS)

Open-File Report↗

USGS1965

Glass electrode determination of sodium in closed basin waters

Because of its direct relation to total dissolved solids content, sodium concentration is the most useful single hydrochemical parameter of closed basin waters in the western United States. Therefore, it is advantageous to have a rapid method for sodium determination which could be readily adapted to field use. Accordingly, thirty waters of highly variable concentration and anionic composition from the western Great Basin have been analyzed with a sodium-sensitive glass electrode. Na + values ranged from 10 to 130,000 ppm in waters containing from 102 to 401,000 ppm total dissolved solids. The electrode values were compared with conventional sodium determinations; results differed by as much as 11 per cent, although over two-thirds were within 5 per cent. No significant relation was found between the glass electrode and conventional method differences and the total dissolved solids or sodium concentration. The comparative accuracy of electrode and conventional procedures was checked, employing solutions of known sodium concentration. It was concluded that for the analysis of sodium in natural waters the glass electrode method offers results comparable in accuracy to those obtained by conventional methods, but with increased simplicity, and therefore the possibility of rapid, accurate field measurements.

Geochimica et Cosmochimica Acta↗

USGS1997

Methods for predicting peak discharge of floods caused by failure of natural and constructed earthen dams

Floods from failures of natural and constructed dams constitute a widespread hazard to people and property. Expeditious means of assessing flood hazards are necessary, particularly in the case of natural dams, which may form suddenly and unexpectedly. We revise statistical relations (derived from data for past constructed and natural dam failures) between peak discharge ( Q p ) and water volume released ( V 0 ) or drop in lake level ( d ) but assert that such relations, even when cast into a dimensionless form, are of limited utility because they fail to portray the effect of breach-formation rate. We then analyze a simple, physically based model of dam-breach formation to show that the hydrograph at the breach depends primarily on a dimensionless parameter η= kV 0 / g l/2 d 7/2 , where k is the mean erosion rate of the breach and g is acceleration due to gravity. The functional relationship between Q p and η takes asymptotically distinct forms depending on whether η ≪ 1 (relatively slow breach formation or small lake volume) or η ≫ 1 (relatively fast breach formation or large lake volume). Theoretical predictions agree well with data from dam failures for which k , and thus η, can be estimated. The theory thus provides a rapid means of predicting the plausible range of values of peak discharge at the breach in an earthen dam as long as the impounded water volume and the water depth at the dam face can be estimated.

Water Resources Research↗

USGS1996

Method for the determination of dissolved chloride, nitrate, and sulfate in natural water using ion chromatography

Ion chromatography was used for the determination of dissolved chloride, nitrate and sulfate in natural water where concentrations ranged from a detection limit of 0.02 milligrams per liter to 80 milligrams per liter for chloride, to 18 milligrams per liter for nitrate, and to 280 milligrams per liter for sulfate. Specific conductance was the mode of detection used. Three analytical sample size loops of 11, 61, and 250 microliters, were used to include the analytical ranges described. U.S. Geological Survey Standard Reference Water Samples were analyzed to test the precision and accuracy of the analyses.

Open-File Report↗

USGS1997

A physically-based method for predicting peak discharge of floods caused by failure of natural and constructed earthen dams

We analyse a simple, physically-based model of breach formation in natural and constructed earthen dams to elucidate the principal factors controlling the flood hydrograph at the breach. Formation of the breach, which is assumed trapezoidal in cross-section, is parameterized by the mean rate of downcutting, k, the value of which is constrained by observations. A dimensionless formulation of the model leads to the prediction that the breach hydrograph depends upon lake shape, the ratio r of breach width to depth, the side slope ?? of the breach, and the parameter ?? = (V/ D3)(k/???gD), where V = lake volume, D = lake depth, and g is the acceleration due to gravity. Calculations show that peak discharge Qp depends weakly on lake shape r and ??, but strongly on ??, which is the product of a dimensionless lake volume and a dimensionless erosion rate. Qp(??) takes asymptotically distinct forms depending on whether ?? < < 1 or ?? > > 1. Theoretical predictions agree well with data from dam failures for which k could be reasonably estimated. The analysis provides a rapid and in many cases graphical way to estimate plausible values of Qp at the breach.

IAHS-AISH Publication↗

USGS2014

Evaluating the predictive performance of empirical estimators of natural mortality rate using information on over 200 fish species

Many methods have been developed in the last 70 years to predict the natural mortality rate, M , of a stock based on empirical evidence from comparative life history studies. These indirect or empirical methods are used in most stock assessments to (i) obtain estimates of M in the absence of direct information, (ii) check on the reasonableness of a direct estimate of M , (iii) examine the range of plausible M estimates for the stock under consideration, and (iv) define prior distributions for Bayesian analyses. The two most cited empirical methods have appeared in the literature over 2500 times to date. Despite the importance of these methods, there is no consensus in the literature on how well these methods work in terms of prediction error or how their performance may be ranked. We evaluate estimators based on various combinations of maximum age ( t max ), growth parameters, and water temperature by seeing how well they reproduce >200 independent, direct estimates of M . We use tenfold cross-validation to estimate the prediction error of the estimators and to rank their performance. With updated and carefully reviewed data, we conclude that a t max -based estimator performs the best among all estimators evaluated. The t max -based estimators in turn perform better than the Alverson–Carney method based on t max and the von Bertalanffy K coefficient, Pauly’s method based on growth parameters and water temperature and methods based just on K . It is possible to combine two independent methods by computing a weighted mean but the improvement over the t max -based methods is slight. Based on cross-validation prediction error, model residual patterns, model parsimony, and biological considerations, we recommend the use of a t max -based estimator ( M = 4.899 t max − 0.916 "> M = 4.899 t − 0.916 max M=4.899tmax−0.916 , prediction error = 0.32) when possible and a growth-based method ( M = 4.118 K 0.73 L ∞ − 0.33 "> M = 4.118 K 0.73 L − 0.33 ∞ M=4.118K0.73L∞−0.33 , prediction error = 0.6, length in cm) otherwise.

ICES Journal of Marine Science↗

USGS2013

An isotope-dilution standard GC/MS/MS method for steroid hormones in water

An isotope-dilution quantification method was developed for 20 natural and synthetic steroid hormones and additional compounds in filtered and unfiltered water. Deuterium- or carbon-13-labeled isotope-dilution standards (IDSs) are added to the water sample, which is passed through an octadecylsilyl solid-phase extraction (SPE) disk. Following extract cleanup using Florisil SPE, method compounds are converted to trimethylsilyl derivatives and analyzed by gas chromatography with tandem mass spectrometry. Validation matrices included reagent water, wastewater-affected surface water, and primary (no biological treatment) and secondary wastewater effluent. Overall method recovery for all analytes in these matrices averaged 100%; with overall relative standard deviation of 28%. Mean recoveries of the 20 individual analytes for spiked reagent-water samples prepared along with field samples analyzed in 2009–2010 ranged from 84–104%, with relative standard deviations of 6–36%. Detection levels estimated using ASTM International’s D6091–07 procedure range from 0.4 to 4 ng/L for 17 analytes. Higher censoring levels of 100 ng/L for bisphenol A and 200 ng/L for cholesterol and 3-beta-coprostanol are used to prevent bias and false positives associated with the presence of these analytes in blanks. Absolute method recoveries of the IDSs provide sample-specific performance information and guide data reporting. Careful selection of labeled compounds for use as IDSs is important because both inexact IDS-analyte matches and deuterium label loss affect an IDS’s ability to emulate analyte performance. Six IDS compounds initially tested and applied in this method exhibited deuterium loss and are not used in the final method.

Book chapter↗

USGS1986

Manual for estimating selected streamflow characteristics of natural-flow streams in the Colorado River basin in Utah

Methods are presented for estimating 10 streamflow characteristics at three types of sites on natural flow streams in the Colorado River Basin in Utah. The streamflow characteristics include average discharge and annual maximum 1-, 7-, and 15-day mean discharges for recurrence intervals of 10, 50 and 100 years. At or near gaged sites, two methods weight gaging station data with regression equation values to estimate streamflow characteristics. At sites on ungaged streams, a method estimates streamflow characteristics using regression equations. The regression equations relate the streamflow characteristics to the following basin and climatic characteristics: contributing drainage area, mean basin elevation, mean annual precipitation, main channel slope, and forested area. Separate regression equations were developed for four hydrologically distinct regions in the study area. The standard error of estimate for the 10 streamflow characteristics ranges from 13% to 87%. Basin, climatic, and streamflow characteristics, available as of September 30, 1981, are presented for 135 gaging stations in Utah, Arizona, Colorado, and Wyoming. In addition, weighted estimates of the streamflow characteristics based on station data and the regression equation estimates are provided for most gaging stations. (Author 's abstract)

Water-Resources Investigations Report↗

USGS1968

Surface seismic measurements of the Project GASBUGGY explosion at intermediate distance ranges

Project GASBUGGY was an experiment performed by the Atomic Energy Commission, the El Paso Natural Gas Company, and the Bureau of Mines, U.S. Department of the Interior, to determine the effectiveness of a method for increasing the recovery of natural gas by large-scale fracturing of a gas-bearing formation with an underground nuclear explosion. The Project GASBUGGY nuclear explosive of 26 kilotons design yield was detonated on Sunday, December 10, 1967, at 1230:00 Mountain Standard Time. Lawrence Radiation Laboratory reported that the explosive was emplaced at 4240 ft below the ground surface, 1770 ft from the west line and 1218 ft from the south line in Section 36 of Township 29 North, Range 4 West, in Rio Arriba County, New Mexico, about 55 air miles east of the city of Farmington, New Mexico. The geodetic coordinates are: Latitude 36?40'40.4" North, and Longitude 107?12'30.3" West. The elevation of surface ground zero was 7204 ft above Mean Sea Level. The detonation occurred in the Lewis shale about 40 ft below its contact with the gas-bearing Pictured Cliffs sandstone. Early indications are that the explosive performed satisfactorily. This document is submitted as a preliminary data report. Additional analyses of the data will be prepared at a later time.

New Mexico↗

USGS2000

Detection of conduit-controlled ground-water flow in northwestern Puerto Rico using aerial photograph interpretation and geophysical methods

The development potential of ground-water resources in the karst limestone of northwestern Puerto Rico, in an area extending from the Río Camuy to Aguadilla, is uncertain as a result of limited knowledge of the location of areas where a high density of cavities (interconnected fractures, conduits, and other dissolution features) might suggest the occurrence of high water yields. The presence in northwestern Puerto Rico of numerous coastal submarine springs, cavernous porosity in some of the wells, and rivers with entrenched and underground paths, indicate that it is probable that water-bearing, subterranean interconnected cavities occur in the area between the Río Camuy and Aguadilla. The number of exploratory wells needed to determine the location of these conduits or zones of enhanced secondary porosity could be substantially reduced if more information were available about the location of these subterranean features, greatly reducing the drilling costs associated with a trial-and-error exploratory process. A 3-year study was conducted by the U.S. Geological Survey, in cooperation with the Puerto Rico Aqueduct and Sewer Authority, to detect the presence of cavities that might suggest the occurrence of conduit-controlled groundwater flow. Aerial photographs, geologic and topographic maps, and field reconnaissance were used to identify such linear terrain features as ridges, entrenched canyons, and fracture traces. Natural potential and gravity geophysical methods were also used. The following sites were selected for the aerial photograph interpretation and geophysical testing: Caimital Bajo uplands and former Ramey Air Force Base in Aguadilla; Quebrada de los Cedros between Aguadilla and Isabela; the University of Puerto Rico Agricultural Experiment Station, Otilio dairy farm, and Pozo Brujo in Isabela; the Monte Encantado area in Moca and Isabela; and the Rio Camuy cave system in Hatillo and Camuy. In general, the degree of success varied with site and the geophysical method used. At some sites such as Pozo Brujo, the University of Puerto Rico Agricultural Experiment Station, and Monte Encantado area, natural potential anomalies strongly suggest the existence of conduits with flowing water. At most sites, however, the results obtained did not clearly reveal the presence of subsurface cavities that might be associated with the occurrence of conduit-controlled ground-water flow. Sites such as the University of Puerto Rico Agricultural Experiment Station, Pozo Brujo, and Quebrada de los Cedros warrant a more detailed analysis, including a test well drilling phase to confirm the presence of suspected high-yield water-bearing zones.

Water-Resources Investigations Report↗

USGS2009

Standard methods for sampling North American freshwater fishes

This important reference book provides standard sampling methods recommended by the American Fisheries Society for assessing and monitoring freshwater fish populations in North America. Methods apply to ponds, reservoirs, natural lakes, and streams and rivers containing cold and warmwater fishes. Range-wide and eco-regional averages for indices of abundance, population structure, and condition for individual species are supplied to facilitate comparisons of standard data among populations. Provides information on converting nonstandard to standard data, statistical and database procedures for analyzing and storing standard data, and methods to prevent transfer of invasive species while sampling.

Book↗

USGS2014

An intercomparison of three methods for the large-scale isolation of oceanic dissolved organic matter

Dissolved organic matter (DOM) was isolated from large volumes of deep (674 m) and surface (21 m) ocean water via reverse osmosis/electrodialysis (RO/ED) and two solid-phase extraction (SPE) methods (XAD-8/4 and PPL) at the Natural Energy Laboratory of Hawaii Authority (NELHA). By applying the three methods to common water samples, the efficiencies of XAD, PPL and RO/ED DOM isolation were compared. XAD recovered 42% of dissolved organic carbon (DOC) from deep water (25% with XAD-8; 17% with XAD-4) and 30% from surface water (16% with XAD-8; 14% with XAD-4). PPL recovered 61 ± 3% of DOC from deep water and 61% from surface water. RO/ED recovered 82 ± 3% of DOC from deep water, 14 ± 3% of which was recovered in a sodium hydroxide rinse, and 75 ± 5% of DOC from surface water, with 12 ± 2% in the sodium hydroxide rinse. The highest recoveries of all were achieved by the sequential isolation of DOC, first with PPL and then via RO/ED. This combined technique recovered 98% of DOC from a deep water sample and 101% of DOC from a surface water sample. In total, 1.9, 10.3 and 1.6 g-C of DOC were collected via XAD, PPL and RO/ED, respectively. Rates of DOC recovery using the XAD, PPL and RO/ED methods were 10, 33 and 10 mg-C h − 1 , respectively. Based upon C/N ratios, XAD isolates were heavily C-enriched compared with water column DOM, whereas RO/ED and PPL ➔ RO/ED isolate C/N values were most representative of the original DOM. All techniques are suitable for the isolation of large amounts of DOM with purities suitable for most advanced analytical techniques. Coupling PPL and RO/ED techniques may provide substantial progress in the search for a method to quantitatively isolate oceanic DOC, bringing the entirety of the DOM pool within the marine chemist's analytical window.

Marine Chemistry↗

USGS2009

Methods of Mmax Estimation East of the Rocky Mountains

Several methods have been used to estimate the magnitude of the largest possible earthquake (Mmax) in parts of the Central and Eastern United States and adjacent Canada (CEUSAC). Each method has pros and cons. The largest observed earthquake in a specified area provides an unarguable lower bound on Mmax in the area. Beyond that, all methods are undermined by the enigmatic nature of geologic controls on the propagation of large CEUSAC ruptures. Short historical-seismicity records decrease the defensibility of several methods that are based on characteristics of small areas in most of CEUSAC. Methods that use global tectonic analogs of CEUSAC encounter uncertainties in understanding what 'analog' means. Five of the methods produce results that are inconsistent with paleoseismic findings from CEUSAC seismic zones or individual active faults.

Open-File Report↗

USGS2001

Natural fertility in whooping cranes and Mississippi sandhill cranes at Patuxent Wildlife Research Center

The first fertile whooping crane (Grus americana; WC) egg produced through natural breeding at Patuxent Wildlife Research Center (Patuxent) was laid in 1991. Prior to that time, all fertile whooping crane eggs were the result of artificial insemination. Since 1991, eight different whooping crane pairs at Patuxent have produced fertile eggs through natural breeding. Mean fertility averages over years for each pair range from 40% to 93%. Fertility rates for each pair also vary greatly between years, from 0% to 100% but the causes of the variance are unknown. Experiences with natural fertility in Mississippi sandhill cranes (G. canadensis pulla; MSC) have been similar. Annual natural fertility rates averaged from 21% to 89% and fertility averages for each of 7 pairs also varied greatly between years. Rearing methods have not determined success in natural breeding for either species. Both hand-reared and parent-reared pairs have been fertile. Wing condition, however, has been an important factor affecting natural fertility. Becausce artificial insemination (AI) generally results in higher fertility rates than natural breeding, Al should continue for some pairs.

Book chapter↗

USGS1993

Methods for collecting algal samples as part of the National Water-Quality Assessment Program

Benthic algae (periphyton) and phytoplankton communities are characterized in the U.S. Geological Survey's National Water-Quality Assessment Program as part of an integrated physical, chemical, and biological assessment of the Nation's water quality. This multidisciplinary approach provides multiple lines of evidence for evaluating water-quality status and trends, and for refining an understanding of the factors that affect water-quality conditions locally, regionally, and nationally. Water quality can be characterized by evaluating the results of qualitative and quantitative measurements of the algal community. Qualitative periphyton samples are collected to develop of list of taxa present in the sampling reach. Quantitative periphyton samples are collected to measure algal community structure within selected habitats. These samples of benthic algal communities are collected from natural substrates, using the sampling methods that are most appropriate for the habitat conditions. Phytoplankton samples may be collected in large nonwadeable streams and rivers to meet specific program objectives. Estimates of algal biomass (chlorophyll content and ash-free dry mass) also are optional measures that may be useful for interpreting water-quality conditions. A nationally consistent approach provides guidance on site, reach, and habitat selection, as well as information on methods and equipment for qualitative and quantitative sampling. Appropriate quality-assurance and quality-control guidelines are used to maximize the ability to analyze data locally, regionally, and nationally.

Open-File Report↗

USGS2002

Development of oak plantations established for wildlife

Extensive areas that are currently in agricultural production within the Mississippi Alluvial Valley are being restored to bottomland hardwood forests. Oaks (Quercus sp.), sown as seeds (acorns) or planted as seedlings, are the predominant trees established on most afforested sites. To compare stand development and natural invasion on sites afforested by planting seedlings or by sowing acorns, we sampled woody vegetation on ten 14- to 18-year-old oak plantations established to provide wildlife habitat. Stem densities of about 900 oaks/ha were comparable between stands established by sowing 4000 acorns/ha and stands established by planting 900 seedlings/ha. Densities of oaks in stands established from seedlings increased 38% from densities detected when these stands were 4- to 8-year-old. Densities of oaks established from field-sown acorns increased >100% during this same 10-year span. Oaks that were planted as seedlings were larger than those established from acorns, but trees resulting from either afforestation method were larger than trees naturally colonizing these sites. Natural invasion of woody species varied greatly among afforested sites, but was greater and more diverse on sites sown with acorns. Afforested stands were dominated by planted species, whereas naturally invading species were rare among dominant canopy trees. When afforestation objectives are primarily to provide wildlife habitat, we recommend, sowing acorns rather than planting seedlings. Additionally, planting fewer seeds or seedlings, diversifying the species planted, and leaving non-planted gaps will increase diversity of woody species and promote a more complex forest structure that enhances the suitability of afforested sites for wildlife.

Forest Ecology and Management↗