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USGS2004

River gain and loss studies for the Red River of the North Basin, North Dakota and Minnesota

The Dakota Water Resources Act passed by the U.S. Congress in 2000 authorized the Secretary of the Interior to conduct a comprehensive study of future water-quantity and -quality needs of the Red River of the North (Red River) Basin in North Dakota and of possible options to meet those water needs. To obtain the river gain and loss information needed to properly account for available streamflow within the basin, available river gain and loss studies for the Sheyenne, Turtle, Forest, and Park Rivers in North Dakota and the Wild Rice, Sand Hill, Clearwater, South Branch Buffalo, and Otter Tail Rivers in Minnesota were reviewed. Ground-water discharges for the Sheyenne River in a reach between Lisbon and Kindred, N. Dak., were about 28.8 cubic feet per second in 1963 and about 45.0 cubic feet per second in 1986. Estimated monthly net evaporation losses for additional flows to the Sheyenne River from the Missouri River ranged from 1.4 cubic feet per second in 1963 to 51.0 cubic feet per second in 1976. Maximum water losses for a reach between Harvey and West Fargo, N. Dak., for 1956-96 ranged from about 161 cubic feet per second for 1976 to about 248 cubic feet per second for 1977. Streamflow gains of 1 to 1.5 cubic feet per second per mile were estimated for the Wild Rice, Sand Hill, and Clearwater Rivers in Minnesota. The average ground-water discharge for a 5.2-mile reach of the Otter Tail River in Minnesota was about 14.1 cubic feet per second in August 1994. The same reach lost about 14.1 cubic feet per second between February 1994 and June 1994 and about 21.2 cubic feet per second between August 1994 and August 1995.

Open-File Report↗

USGS2012

Concentrations, loads, and yields of select constituents from major tributaries of the Mississippi and Missouri Rivers in Iowa, water years 2004-2008

Excess nutrients, suspended-sediment loads, and the presence of pesticides in Iowa rivers can have deleterious effects on water quality in State streams, downstream major rivers, and the Gulf of Mexico. Fertilizer and pesticides are used to support crop growth on Iowa's highly productive agricultural landscape and for household and commercial lawns and gardens. Water quality was characterized near the mouths of 10 major Iowa tributaries to the Mississippi and Missouri Rivers from March 2004 through September 2008. Stream loads were calculated for select ions, nutrients, and sediment using approximately monthly samples, and samples from storm and snowmelt events. Water-quality samples collected using standard streamflow-integrated protocols were analyzed for major ions, nutrients, carbon, pesticides, and suspended sediment. Statistical data summaries of sample data used parametric and nonparametric techniques to address potential bias related to censored data and multiple levels of censoring of data below analytical detection limits. Constituent stream loads were computed using standard pre-defined models in S-LOADEST that include streamflow and time terms plus additional terms for streamflow variability and streamflow anomalies. Streamflow variability terms describe the difference in streamflow from recent average conditions, whereas streamflow anomaly terms account for deviations from average conditions from long- to short-term sequentially. Streamflow variability or anomaly terms were included in 44 of 80 site/constituent individual models, demonstrating the usefulness of these terms in increasing accuracy of the load estimates. Constituent concentrations in Iowa streams exhibit streamflow, seasonal, and spatial patterns related to the landform and climate gradients across the studied basins. The streamflow-concentration relation indicated dilution for ions such as chloride and sulfate. Other constituent concentrations, such as dissolved organic carbon and suspended sediment, increased with streamflow. Nitrogen concentrations (total nitrogen and nitrate plus nitrite) increased with low and moderate streamflows, but decreased with high streamflows. Seasonal patterns observed in constituent concentrations were affected by streamflow, algae blooms, and pesticide application. The various landform regions produced different water-quality responses across the study basins; for example, total phosphorus, suspended sediment, and turbidity were greatest from the steep, loess-dominated southwestern Iowa basins. Nutrient concentrations, though not regulated for drinking water at the study sites, were high compared to drinking-water limits and criteria for protection of aquatic life proposed for other Midwestern states (Iowa criteria for aquatic life have not been proposed). Nitrate plus nitrite concentrations exceeded the drinking-water limit [10 milligrams per liter (mg/L)] in 11 percent of all samples at the 10 sites, and exceeded Minnesota's proposed aquatic life criteria (4.9 mg/L) in 68 percent of samples. The Wisconsin standard for total phosphorus (0.1 mg/L) was exceeded in 92 percent of samples. Ammonia standards, current during sample collection and at publication of this report, for protection of aquatic life were met for all samples, but draft criteria proposed in 2009 to protect more sensitive species like mussels, were exceeded at three sites. Loads and yields also differed among sites and years. The Big Sioux, Little Sioux, and Des Moines Rivers produced the greatest sulfate yields. Mississippi River tributaries had greater chloride yields than Missouri River tributaries. The Big Sioux River also had the lowest silica yields and total nitrogen and nitrate yields, whereas nitrogen yields were greater in the northeastern rivers. The Boyer and Nishnabotna River total phosphorus yields were the greatest in the study. The Boyer River orthophosphate yields were greatest except in 2008, when the Maquoketa River produced the greatest yield. Rivers in southwestern Iowa's Western Loess Hills and Steeply Rolling Loess Prairie ecoregions had the greatest suspended-sediment yields, whereas the smallest yields were in the Big Sioux and Wapsipinicon Rivers. In the 10 Iowa rivers studied, combined annual total nitrogen stream transport ranged from 3.68 to 9.95 tons per square mile per year, and total phosphorus transport ranged from 0.138 to 0.570 tons per square mile per year. Six-month loads relative to fertilizer use ranged from 8 to 56 percent for nitrogen, and 1.0 to 11.1 percent for phosphorus. The smallest loads relative to fertilizer use for both nitrogen and phosphorus occurred in July-December of dry years, and the largest nitrogen and phosphorus loads relative to use were in wet years from January-June.

Iowa;Minnesota;South Dakota↗

USGS2021

Production of haploid gynogens to inform genomic resource development in the paleotetraploid pallid sturgeon (Scaphirhynchus albus)

Order Acipenseriformes (sturgeons and paddlefishes) is an ancient lineage of osteichthyan fishes (>200 million years old) with most extant species at conservation risk. A relatively basal species, the pallid sturgeon, Scaphirhynchus albus, is a federally endangered species native to the Mississippi and Missouri River basins. Hybridization with sympatric shovelnose sturgeon, S. platorynchus, is one of several threats to pallid sturgeon. Current molecular markers cannot reliably distinguish among pure species and multigenerational backcrosses. This information is critical for implementation of management strategies to increase populations through natural reproduction and artificial propagation. Genotypes from a large panel of unlinked single-nucleotide polymorphisms (SNPs) may provide greater resolution of the two species; however, paralogous sequence variants (PSVs) within individuals resulting from an ancient whole genome duplication event confound SNP development. The aim of this study was to produce pallid sturgeon gynogens that contain 100% homozygous DNA contributed by only the maternal parent and have enough DNA for future SNP marker development. When homozygous gynogens are sequenced, heterozygosity at a locus within an individual indicates the presence of incorrectly aligned sequences that contain PSVs; accurate identification of these multi-locus contigs can facilitate their exclusion when developing disomic markers. In this study, we attempted to produce two types of pallid sturgeon gynogens: a) haploid gynogens produced from the activation of pallid sturgeon eggs with ultraviolet-irradiated sperm from the distantly related paddlefish (Polyodon spathula), and b) doubled haploids produced from the activation of pallid sturgeon eggs with irradiated paddlefish milt followed by thermal shock to suppress the first mitotic division. Production of doubled haploids, gynogens with 100% homozygous DNA and double the genome content of haploid gynogens, was pursued because it was originally unknown if haploid gyongens would survive long enough to attain enough genetic material for SNP marker development. We performed flow cytometry and microsatellite genotyping on the specimens in order to confirm haploid and doubled haploid status. Our study was unable to successfully yield doubled haploids; however, we successfully produced haploid gynogens that contained enough nuclear DNA for our future SNP marker development study. Interestingly, this study also produced paddlefish × pallid sturgeon hybrids in the control groups in two separate years; this is the first study to report viable offspring between the paddlefish and a Scaphirhynchus sturgeon species and reflects on the malleability of the genomes of the species in this order.

Louisiana, Arkansas, Missouri, Nebraska, North Dak↗

USGS2019

Pallid sturgeon basin-wide contaminants assessment

Pallid sturgeon (Scaphirhynchus albus), listed as endangered in 1990 under the federal Endangered Species Act (United States Fish and Wildlife Service (USFWS), 1990), have declined due to habitat loss, commercial fishing, and hybridization. Pollution in the Missouri and Mississippi Rivers has to-date only received minor attention as a factor in the on-going decline of wild pallid sturgeon populations (Jacobson et al. 2016a; Bergman 2008). Pallid sturgeon experts and contaminant specialists conceived of the Pallid Sturgeon Basin-Wide Contaminants Assessment (Assessment) to identify potentially harmful contaminants (contaminants of concern), their distribution within pallid sturgeon habitat, and their effects on pallid sturgeon at the landscape level. Extant water quality and analytical chemistry data from samples of river water, sediment, and sturgeon tissues from past studies, assessments, or monitoring activities throughout the species’ range were used to establish a list of contaminants. The list includes: metal and non-metal elements, pesticides, organic industrial chemicals, hormones, nutrients, and other potential water quality contaminants. Environmental samples collected from January 1, 2001 through December 31, 2014, when available, were used for all evaluations. This report is effectively a screening level hazard assessment whereby contituents of concern that may pose a potential harm to pallid sturgeon have been identified. These constituents of concern warrant further examination to determine the level of risk they pose to pallid sturgeon. The Assessment process was one of comparing the existing environmental data for individual constituents to reference values for adverse effects on fish specifically or aquatic life generally. The product of the Assessment is a simplified summary that is geographically organized by pallid sturgeon management unit that generally categorizes each individual contaminant or water quality constituent according to operationally defined levels of concern. This hazard assessment identifies potential constituents of concern to pallid sturgeon and may support prioritization for future data collection and research to enable a quantitative risk assessment. Regional data density at spatial and temporal scales notwithstanding, the Assessment points to some generalities in contaminant concerns within and across management units. Metals but not pesticides are the predominant contaminant of concern in the Great Plains Management Unit (GPMU). In the Central Lowlands Management Unit (CLMU), selenium exceeds benchmark levels. Triazine herbicides are potentially of concern in all but the GPMU. Concentrations of legacy contaminants such as PCBs and DDT and its metabolites exceeded benchmarks in samples from the CLMU, Interior Highlands Mangement Unit (IHMU), and Coastal Plains Management Unit (CPMU), but local and national trends indicate environmental levels of these contaminants continue to decline. Observed concentrations of nutrients and indicators of nutrient pollution were above benchmark levels throughout the pallid sturgeon’s range; however, the significance for pallid sturgeon health specifically is unknown. Almost no information exists on contemporary contaminants of concern such as the natural and synthetic estrogens (estradiol, ethinyl estradiol, and estrone) or polybrominated diphenyls (PBDEs). There are considerable informational data gaps for contaminants throughout the species’ range. Water quality measurements were the most frequent data encountered whereas, sediment and tissue data were orders of magnitude less frequent. The paucity of sediment and tissue concentrations, particularly the latter, prevents any meaningful conclusions regarding adverse effects of these contaminants on the growth and reproduction of pallid sturgeon. However, the Assessment could form the basis for regional workshops with subject matter specialists to develop plans to evaluate the contaminants most likely to affect pallid sturgeon health.

Missouri River basin, Mississippi River basin↗

USGS2014

Ecological requirements for pallid sturgeon reproduction and recruitment in the Missouri River: annual report 2011

The Comprehensive Sturgeon Research Project is a multiyear, multiagency collaborative research framework developed to provide information to support pallid sturgeon recovery and Missouri River management decisions. The project strategy integrates field and laboratory studies of sturgeon reproductive ecology, early life history, habitat requirements, and physiology. The project scope of work is developed annually with cooperating research partners and in collaboration with the U.S. Army Corps of Engineers, Missouri River Recovery—Integrated Science Program. The research consists of several interdependent and complementary tasks that engage multiple disciplines. The research tasks in the 2011 scope of work emphasized understanding of reproductive migrations and spawning of adult sturgeon, and hatch and drift of larvae. These tasks were addressed in three hydrologically and geomorphologically distinct parts of the Missouri River Basin: the Lower Missouri River downstream from Gavins Point Dam, the Upper Missouri River downstream from Fort Peck Dam and including downstream reaches of the Milk River, and the Lower Yellowstone River. The research is designed to inform management decisions related to channel re-engineering, flow modification, and pallid sturgeon population augmentation on the Missouri River, and throughout the range of the species. Research and progress made through this project are reported to the U.S. Army Corps of Engineers annually. This annual report details the research effort and progress made by the Comprehensive Sturgeon Research Project during 2011.

Missouri River↗

USGS1996

Overview of water resources in and near Indian lands in northeastern Kansas and southeastern Nebraska

An overview of water resources is provided for a 4,005-square-mile area of northeastern Kansas and southeastern Nebraska that includes the treatylands for the Iowa Tribe of Kansas and Nebraska, the Kickapoo Tribe of Kansas, the Prairie Band of Potawatomi, and the Sac and Fox Tribe ofMissouri. The only plentiful supplies of surface water are available from the Missouri and Kansas Rivers. The smallest mean streamflows for 4 consecutive months occur in November through February for most streams in the area. The smallest flows for 7 consecutive days in a year occur most often in August, September, or October. The typical seasonal distribution of streamflows indicates a pattern favorable for the same-year use of small surface-water impoundments for low-flow augmentation; large flows that could be impounded typically occur in the month shortly before augmentation is most needed. However, droughts of 2 or more consecutive years are common and would largely negate the advantage of using small impoundments except for very small water-supply needs. Alluvial deposits along the Kansas and Missouri Rivers provide the largest well yields in the study area, but these deposits are limited in areal extent. The Kansas River alluvium reaches a maximum saturated thickness of about 70 feet, and the Missouri River alluvium reaches a maximum thickness of 120 feet. Well yields in the Kansas River generally range from 300 to 1,000 gallons per minute (gal/min) but may be as large as 2,500 gal/min. Well yields in the Missouri River alluvium generally range from 150 to 2,500 gal/min but may be as large as 3,000 gal/min. Although generally capable only of small sustained yields to wells, minor aquifers are important because they are available throughout most of the study area. Within the thick, mostly fine-grained glacial deposits, isolated sand and gravel layers may yield adequate supplies for stock- watering or domestic use. Sodium concentrations exceed the U.S. Environmental Protection Agency's (USEPA) Secondary Maximum Contaminant Level of 20 milligrams per liter most often in the middle Kansas and Delaware Basins. Total iron andmanganese concentrations in water generally exceed the USEPA Secondary Maximum Contaminant Levels of 50 micrograms per liter for iron and 300micrograms per liter for manganese. Atrazine concentrations in surface water, primarily from post-application runoff, commonly exceed the USEPA Maximum Contaminant Level of 3.0 micrograms per liter during the months of May, June, and July. Most of the erosion and about one- half of the total sediment yield in parts of the study area may result from sheet and rill erosion and gullying on cultivated cropland. A total of 3.13 million gallons per day (Mgal/d) of water was used in 1990 in the Big Nemaha River Basin, 74 percent of which was derived from ground water. In the Wolf River Basin, 1.29 Mgal/d were used, 71 percent derived from ground water. The Middle Kansas River Basin had the highest water use, 83.01 Mgal/d, 67 percent of which was from surface water. A total of 4.37 Mgal/d was used in the Delaware River Basin, 55 percent from ground water.

Water-Resources Investigations Report↗

USGS2016

Ecological requirements for pallid sturgeon reproduction and recruitment in the Missouri River—Annual report 2014

The Comprehensive Sturgeon Research Project is a multiyear, multiagency collaborative research framework developed to provide information to support pallid sturgeon recovery and Missouri River management decisions. The project strategy integrates field and laboratory studies of sturgeon reproductive ecology, early life history, habitat requirements, and physiology. The project scope of work is developed annually with collaborating research partners and in cooperation with the U.S. Army Corps of Engineers, Missouri River Recovery Program–Integrated Science Program. The project research consists of several interdependent and complementary tasks that involve multiple disciplines. The project research tasks in the 2014 scope of work emphasized understanding of reproductive migrations and spawning of adult pallid sturgeon and hatch and drift of larvae. These tasks were addressed in three hydrologically and geomorphologically distinct parts of the Missouri River Basin: the Lower Missouri River downstream from Gavins Point Dam, the Upper Missouri River downstream from Fort Peck Dam and downstream reaches of the Milk River, and the Lower Yellowstone River. The project research is designed to inform management decisions related to channel re-engineering, flow modification, and pallid sturgeon population augmentation on the Missouri River and throughout the range of the species. Research and progress made through this project are reported to the U.S. Army Corps of Engineers annually. This annual report details the research effort and progress made by the Comprehensive Sturgeon Research Project during 2014.

Missouri, Montana, Nebraska↗

USGS1994

Chemical reaction path modeling of ore deposition in Mississippi Valley-type Pb-Zn deposits of the Ozark region, US midcontinent

The Ozark region of the U.S. midcontinent is host to a number of Mississippi Valley-type districts, including the world-class Viburnum Trend, Old Lead Belt, and Tri-State districts and the smaller Southeast Missouri barite, Northern Arkansas, and Central Missouri districts. There is increasing evidence that the Ozark Mississippi Valley-type districts formed locally within a large, interconnected hydrothermal system that also produced broad fringing areas of trace mineralization, extensive subtle hydrothermal alteration, broad thermal anomalies, and regional deposition of hydrothermal dolomite cement. The fluid drive was provided by gravity flow accompanying uplift of foreland thrust belts during the Late Pennsylvanian to Early Permian Ouaehita orogeny.In this study, we use chemical speciation and reaction path calculations, based on quantitative chemical analyses of fluid inclusions, to constrain likely hydrothermal brine compositions and to determine which precipitation mechanisms are consistent with the hydrothermal mineral assemblages observed regionally and locally within each Mississippi Valley-type district in the Ozark region. Deposition of the regional hydrothermal dolomite cement with trace sulfides likely occurred in response to near-isothermal effervescence of CO 2 from basinal brines as they migrated to shallower crustal levels and lower confining pressures. In contrast, our calculations indicate that no one depositional process can reproduce the mineral assemblages and proportions of minerals observed in each Ozark ore district; rather, individual districts require specific depositional mechanisms that reflect the local host-rock composition, structural setting, and hydrology.Both the Northern Arkansas and Tri-State districts are localized by normal faults that likely allowed brines to rise from deeper Cambrian-Ordovician dolostone aquifers into shallower carbonate sequences dominated by limestones. In the Northern Arkansas district, jasperoid preferentially replaced limestones in the mixed dolostone-limestone sedimentary packages. Modeling results indicate that the ore and alteration assemblages in the Tri-State and Northern Arkansas districts resulted from the flow of initially dolomite-saturated brines into cooler limestones. Adjacent to fluid conduits where water/rock ratios were the highest, the limestone was replaced by dolomite. As the fluids moved outward into cooler limestone, jasperoid and sulfide replaced limestone. Isothermal boiling of the ore fluids may have produced open-space filling of hydrothermal dolomite with minor sulfides in breccia and fault zones. Local mixing of the regional brine with locally derived sulfur undoubtedly played a role in the development of sulfide-rich ore runs.Sulfide ores of the Central Missouri district are largely open-space filling of sphalerite plus minor galena in dolostone karst features localized along a broad anticline. Hydrothermal solution collapse during ore deposition was a minor process, indicating dolomite was slightly undersaturated during ore deposition. No silicification and only minor hydrothermal dolomite is present in the ore deposits. The reaction path that best explains the features of the Central Missouri sulfide deposits is the near-isothermal mixing of two dolomite-saturated fluids with different H 2 S and metal contents. Paleokarst features may have allowed the regional brine to rise stratigraphically and mix with locally derived, H 2 S-rich fluids. The Viburnum Trend and Old Lead Belt ores are galena rich with lesser amounts of sphalerite; they replace the most permeable dolostone facies in the Bonneterre Dolomite. Hydrothermal dissolution of host dolostone was concurrent with sulfide deposition, but dolomite deposition occurred episodically between periods of sulfide deposition. The important ore controls in these districts are a variety of sedimentary and geologic features that allowed cross-stratigraphic fluid flow and provided opportunities for fluid mixing. The reaction path which best reproduces the broad features of the Viburnum Trend and Old Lead Belt ores is one in which a dolomite-saturated, lead-rich, zinc- and H 2 S-poor brine mixes with a less saline, H 2 S-rich fluid. The brine became enriched in K, Mg, and Pb and depleted in H 2 S as it flowed through sandstone and redbed aquifers prior to entering the district. This mixing model is consistent with the abundant fluid inclusion and stable isotope evidence for fluid mixing in the districts. Small amounts of cooling associated with the mixing may have contributed to sulfide deposition.

Alabama, Arkansas, Illinois, Indiana, Kansas, Kent↗

USGS2010

Water quality and ecological condition of urban streams in Independence, Missouri, June 2005 through December 2008

To identify the sources of selected constituents in urban streams and better understand processes affecting water quality and their effects on the ecological condition of urban streams and the Little Blue River in Independence, Missouri the U.S. Geological Survey in cooperation with the City of Independence Water Pollution Control Department initiated a study in June 2005 to characterize water quality and evaluate the ecological condition of streams within Independence. Base-flow and stormflow samples collected from five sites within Independence, from June 2005 to December 2008, were used to characterize the physical, chemical, and biologic effects of storm runoff on the water quality in Independence streams and the Little Blue River. The streams draining Independence-Rock Creek, Sugar Creek, Mill Creek, Fire Prairie Creek, and the Little Blue River-drain to the north and the Missouri River. Two small predominantly urban streams, Crackerneck Creek [12.9-square kilometer (km2) basin] and Spring Branch Creek (25.4-km2 basin), were monitored that enter into the Little Blue River between upstream and downstream monitoring sites. The Little Blue River above the upstream site is regulated by several reservoirs, but streamflow is largely uncontrolled. The Little Blue River Basin encompasses 585 km2 with about 168 km2 or 29 percent of the basin lying within the city limits of Independence. Water-quality samples also were collected for Rock Creek (24.1-km2 basin) that drains the western part of Independence. Data collection included streamflow, physical properties, dissolved oxygen, chloride, metals, nutrients, common organic micro-constituents, and fecal indicator bacteria. Benthic macroinvertebrate community surveys and habitat assessments were conducted to establish a baseline for evaluating the ecological condition and health of streams within Independence. Additional dry-weather screenings during base flow of all streams draining Independence were conducted to identify point-source discharges and other sources of potential contamination. Regression models were used to estimate continuous and annual flow-weighted concentrations, loadings, and yields for chloride, total nitrogen, total phosphorus, suspended sediment, and Escherichia coli bacteria densities. Base-flow and stormflow water-quality samples were collected at five sites within Independence. Base-flow samples for Rock Creek and two tributary streams to the Little Blue River exceeded recommended U.S. Environmental Protection Agency standards for the protection of aquatic life for total nitrogen and total phosphorus in about 90 percent of samples, whereas samples collected at two Little Blue River sites exceeded both the total nitrogen and total phosphorus standards less often, about 30 percent of the time. Dry-weather screening identified a relatively small number (14.0 percent of all analyses) of potential point-source discharges for total chlorine, phenols, and anionic surfactants. Stormflow had larger median measured concentrations of total common organic micro-constituents than base flow. The four categories of common organic micro-constituents with the most total detections in stormflow were pesticides (100 percent), polyaromatic hydrocarbons and combustion by-products (99 percent), plastics (93 percent), and stimulants (91 percent). Most detections of common organic micro-constituents were less than 2 micrograms per liter. Median instantaneous Escherichia coli densities for stormflow samples showed a 21 percent increase measured at the downstream site on the Little Blue River from the sampled upstream site. Using microbial source-tracking methods, less than 30 percent of Escherichia coli bacteria in samples were identified as having human sources. Base-flow and stormflow data were used to develop regression equations with streamflow and continuous water-quality data to estimate daily concentrations, loads, and yields of various water-quality contaminants.

Scientific Investigations Report↗

USGS2014

Conceptual model of the uppermost principal aquifer systems in the Williston and Powder River structural basins, United States and Canada

The three uppermost principal aquifer systems of the Northern Great Plains—the glacial, lower Tertiary, and Upper Cretaceous aquifer systems—are described in this report and provide water for irrigation, mining, public and domestic supply, livestock, and industrial uses. These aquifer systems primarily are present in two nationally important fossil-fuelproducing areas: the Williston and Powder River structural basins in the United States and Canada. The glacial aquifer system is contained within glacial deposits that overlie the lower Tertiary and Upper Cretaceous aquifer systems in the northeastern part of the Williston structural basin. Productive sand and gravel aquifers exist within this aquifer system. The Upper Cretaceous aquifer system is contained within bedrock lithostratigraphic units as deep as 2,850 and 8,500 feet below land surface in the Williston and Powder River structural basins, respectively. Petroleum extraction from much deeper formations, such as the Bakken Formation, is rapidly increasing because of recently improved hydraulic fracturing methods that require large volumes of relatively freshwater from shallow aquifers or surface water. Extraction of coalbed natural gas from within the lower Tertiary aquifer system requires removal of large volumes of groundwater to allow degasification. Recognizing the importance of understanding water resources in these energy-rich basins, the U.S. Geological Survey (USGS) Groundwater Resources Program ( http://water.usgs.gov/ogw/gwrp/ ) began a groundwater study of the Williston and Powder River structural basins in 2011 to quantify this groundwater resource, the results of which are described in this report. The overall objective of this study was to characterize, quantify, and provide an improved conceptual understanding of the three uppermost and principal aquifer systems in energy-resource areas of the Northern Great Plains to assist in groundwater-resource management for multiple uses. The study area includes parts of Montana, North Dakota, South Dakota, and Wyoming in the United States and Manitoba and Saskatchewan in Canada. The glacial aquifer system is contained within glacial drift consisting primarily of till, with smaller amounts of glacial outwash sand and gravel deposits. The lower Tertiary and Upper Cretaceous aquifer systems are contained within several formations of the Tertiary and Cretaceous geologic systems, which are hydraulically separated from underlying aquifers by a basal confining unit. The lower Tertiary and Upper Cretaceous aquifer systems each were divided into three hydrogeologic units that correspond to one or more lithostratigraphic units. The period prior to 1960 is defined as the predevelopment period when little groundwater was extracted. From 1960 through 1990, numerous flowing wells were installed near the Yellowstone, Little Missouri and Knife Rivers, resulting in local groundwater declines. Recently developed technologies for the extraction of petroleum resources, which largely have been applied in the study area since about 2005, require millions of gallons of water for construction of each well, with additional water needed for long-term operation; therefore, the potential for an increase in groundwater extraction is high. In this study, groundwater recharge and discharge components were estimated for the period 1981–2005. Groundwater recharge primarily occurs from infiltration of rainfall and snowmelt (precipitation recharge) and infiltration of streams into the ground (stream infiltration). Total estimated recharge to the Williston and Powder River control volumes is 4,560 and 1,500 cubic feet per second, respectively. Estimated precipitation recharge is 26 and 15 percent of total recharge for the Williston and Powder River control volumes, respectively. Estimated stream infiltration is 71 and 80 percent of total recharge for the Williston and Powder River control volumes, respectively. Groundwater discharge primarily is to streams and springs and is estimated to be about 97 and 92 percent of total discharge for the Williston and Powder River control volumes, respectively. Most of the remaining discharge results from pumped and flowing wells. Groundwater flow in the Williston structural basin generally is from the west and southwest toward the east, where discharge to streams occurs. Locally, in the uppermost hydrogeologic units, groundwater generally is unconfined and flows from topographically high to low areas, where discharge to streams occurs. Groundwater flow in the Powder River structural basin generally is toward the north, with local variations, particularly in the upper Fort Union aquifer, where flow is toward streams.

Manitoba;Montana;North Dakota;Saskatchewan;South D↗

USGS1974

Model synthesis in frequency analysis of Missouri floods

Synthetic flood records for 43 small-stream sites aided in definition of techniques for estimating the magnitude and frequency of floods in Missouri. The long-term synthetic flood records were generated by use of a digital computer model of the rainfall-runoff process. A relatively short period of concurrent rainfall and runoff data observed at each of the 43 sites was used to calibrate the model, and rainfall records covering from 66 to 78 years for four Missouri sites and pan-evaporation data were used to generate the synthetic records. Flood magnitude and frequency characteristics of both the synthetic records and observed long-term flood records available for 109 large-stream sites were used in a multiple-regression analysis to define relations for estimating future flood characteristics at ungaged sites. That analysis indicated that drainage basin size and slope were the most useful estimating variables. It also indicated that a more complex regression model than the commonly used log-linear one was needed for the range of drainage basin sizes available in this study.

Circular↗

USGS2016

Methods for estimating annual exceedance probability discharges for streams in Arkansas, based on data through water year 2013

In 2013, the U.S. Geological Survey initiated a study to update regional skew, annual exceedance probability discharges, and regional regression equations used to estimate annual exceedance probability discharges for ungaged locations on streams in the study area with the use of recent geospatial data, new analytical methods, and available annual peak-discharge data through the 2013 water year. An analysis of regional skew using Bayesian weighted least-squares/Bayesian generalized-least squares regression was performed for Arkansas, Louisiana, and parts of Missouri and Oklahoma. The newly developed constant regional skew of -0.17 was used in the computation of annual exceedance probability discharges for 281 streamgages used in the regional regression analysis. Based on analysis of covariance, four flood regions were identified for use in the generation of regional regression models. Thirty-nine basin characteristics were considered as potential explanatory variables, and ordinary least-squares regression techniques were used to determine the optimum combinations of basin characteristics for each of the four regions. Basin characteristics in candidate models were evaluated based on multicollinearity with other basin characteristics (variance inflation factor < 2.5) and statistical significance at the 95-percent confidence level ( p ≤ 0.05). Generalized least-squares regression was used to develop the final regression models for each flood region. Average standard errors of prediction of the generalized least-squares models ranged from 32.76 to 59.53 percent, with the largest range in flood region D. Pseudo coefficients of determination of the generalized least-squares models ranged from 90.29 to 97.28 percent, with the largest range also in flood region D. The regional regression equations apply only to locations on streams in Arkansas where annual peak discharges are not substantially affected by regulation, diversion, channelization, backwater, or urbanization. The applicability and accuracy of the regional regression equations depend on the basin characteristics measured for an ungaged location on a stream being within range of those used to develop the equations.

Arkansas↗

USGS2009

Geohydrologic Investigations and Landscape Characteristics of Areas Contributing Water to Springs, the Current River, and Jacks Fork, Ozark National Scenic Riverways, Missouri

The Ozark National Scenic Riverways (ONSR) is a narrow corridor that stretches for approximately 134 miles along the Current River and Jacks Fork in southern Missouri. Most of the water flowing in the Current River and Jacks Fork is discharged to the rivers from springs within the ONSR, and most of the recharge area of these springs is outside the ONSR. This report describes geohydrologic investigations and landscape characteristics of areas contributing water to springs and the Current River and Jacks Fork in the ONSR. The potentiometric-surface map of the study area for 2000-07 shows that the groundwater divide extends beyond the surface-water divide in some places, notably along Logan Creek and the northeastern part of the study area, indicating interbasin transfer of groundwater between surface-water basins. A low hydraulic gradient occurs in much of the upland area west of the Current River associated with areas of high sinkhole density, which indicates the presence of a network of subsurface karst conduits. The results of a low base-flow seepage run indicate that most of the discharge in the Current River and Jacks Fork was from identified springs, and a smaller amount was from tributaries whose discharge probably originated as spring discharge, or from springs or diffuse groundwater discharge in the streambed. Results of a temperature profile conducted on an 85-mile reach of the Current River indicate that the lowest average temperatures were within or downstream from inflows of springs. A mass-balance on heat calculation of the discharge of Bass Rock Spring, a previously undescribed spring, resulted in an estimated discharge of 34.1 cubic feet per second (ft3/s), making it the sixth largest spring in the Current River Basin. The 13 springs in the study area for which recharge areas have been estimated accounted for 82 percent (867 ft3/s of 1,060 ft3/s) of the discharge of the Current River at Big Spring during the 2006 seepage run. Including discharge from other springs, the cumulative discharge from springs was over 90 percent of the river discharge at most of the spring locations, and was 92 percent at Big Spring and at the lower end of the ONSR. The discharge from the 1.9-mile long Pulltite Springs Complex measured in the 2006 seepage run was 88 ft3/s. Most of this (77 ft3/s) was from the first approximately 0.25 mi of the Pulltite Springs Complex. It has been estimated that the annual mean discharge from the Current River Springs Complex is 125 ft3/s, based on an apparent discharge of 50 ft3/s during a 1966 U.S. Geological Survey seepage run. However, a reinterpretation of the 1966 seepage run data shows that the discharge from the Current River Springs Complex instead was about 12.6 ft3/s, and the annual mean discharge was estimated to be 32 ft3/s, substantially less than 125 ft3/s. The 2006 seepage run showed a gain of only 12 ft3/s from the combined Round Spring and Current River Springs Complex from the mouth of Sinking Creek to 0.7 mi upstream from Root Hollow. The 2006 temperature profile measurements did not indicate any influx of spring discharge throughout the length of the Current River Springs Complex. The spring recharge areas with the largest number of identified sinkholes are Big Spring, Alley Spring, and Welch Spring. The spring recharge areas with the largest number of sinkholes per square mile of recharge area are Alley Spring, Blue Spring (Jacks Fork), Welch Spring, and Round Spring and the Current River Springs Complex. Using the currently known locations of losing streams, the Big Spring recharge area has the largest number of miles of losing stream, and the Bass Rock Spring recharge area has the largest number of miles of losing stream per unit recharge area. The spring recharge areas with the most open land and the least forested land per unit recharge area are Blue Spring (Jacks Fork), Welch Spring, Montauk Springs, and Alley Spring. The spring recharge areas with the least amount

Scientific Investigations Report↗

USGS2015

Climate and streamflow characteristics for selected streamgages in eastern South Dakota, water years 1945–2013

Upward trends in precipitation and streamflow have been observed in the northeastern Missouri River Basin during the past century, including the area of eastern South Dakota. Some of the identified upward trends were anomalously large relative to surrounding parts of the northern Great Plains. Forcing factors for streamflow trends in eastern South Dakota are not well understood, and it is not known whether streamflow trends are driven primarily by climatic changes or various land-use changes. Understanding the effects that climate (specifically precipitation and temperature) has on streamflow characteristics within a region will help to better understand additional factors such as land-use alterations that may affect the hydrology of the region. To aid in this understanding, a study was completed by the U.S. Geological Survey, in cooperation with the East Dakota Water Development District and James River Water Development District, to assess trends in climate and streamflow characteristics at 10 selected streamgages in eastern South Dakota for water years (WYs) 1945–2013 (69 years) and WYs 1980–2013 (34 years). A WY is the 12-month period, October 1 through September 30, and is designated by the calendar year in which it ends. One streamgage is on the Whetstone River, a tributary to the Minnesota River, and the other streamgages are in the James, Big Sioux, and Vermillion River Basins. The watersheds for two of the James River streamgages extend into North Dakota, and parts of the watersheds for two of the Big Sioux River streamgages extend into Minnesota and Iowa. The objectives of this study were to document trends in streamflow and precipitation in these watersheds, and characterize the residual streamflow variability that might be attributed to factors other than precipitation. Residuals were computed as the departure from a locally-weighted scatterplot smoothing (LOWESS) model. Significance of trends was based on the Mann-Kendall nonparametric test at a 0.10 significance level. Of the 10 streamgages selected, only the Elm River at Westport (in the upper part of James River Basin) did not have a significant upward trend in annual mean streamflow for WYs 1945–2013, whereas only one-half of the streamgages had significant upward trends in annual mean streamflow for WYs 1980–2013. Mean and 7-day minimum streamflows also had upward trends for the spring runoff period (March–May) for most of the streamgages during WYs 1945–2013 and for one streamgage during WYs 1980–2013. Magnitudes of increases in streamflow were as great as 30 cubic feet per second per year for the streamgage on the James River near Scotland during WYs 1980–2013. Precipitation trends for WYs 1945–2013 were not necessarily significant for the watersheds of streamgages with a significant streamflow trend. Annual total precipitation had a significant upward trend for the watersheds of 4 of the 10 streamgages during WYs 1945–2013 and no significant trends for WYs 1980–2013. The most widespread precipitation increase was for September–November, with significant upward trends for the watersheds of 8 of the 10 streamgages during WYs 1945–2013; however, no trends in September– November precipitation were significant for WYs 1980–2013. The greatest magnitude of increase in precipitation was for the December–May season during WYs 1980–2013, which had a mean increase of 0.106 inch per year in the watersheds of streamgages with significant trends. The correlation between streamflow and precipitation metrics was low as indicated by the mean coefficient of determination (R 2 ) of 0.18 for all pairs considered. The highest locally-weighed scatterplot smoothing (LOWESS) correlation was between annual precipitation (by water year) and annual mean streamflow (by water year), which had a mean R 2 of 0.47 for all streamgages and was as high as 0.72 for one streamgage. The correlation between annual precipitation and March–May mean streamflow had a mean R 2 of 0.33 for all streamgages and was as high as 0.52 for one streamgage. Other metrics had R 2 values for LOWESS correlations that were less than 0.3 and were not further considered for analyses of residuals. For annual precipitation as a predictor of annual mean flow, precipitation-removed streamflow had significant upward trends during WYs 1945–2013 for one-half of the streamgages. Upward trends in residual annual mean streamflow were indicated for the Whetstone River and lower part of the Big Sioux River Basin, indicating that other factors are contributors to streamflow variability during WYs 1945–2013. In contrast, most of the streamgages in the James and Vermillion River Basins had no trends in residual annual mean streamflow, indicating that streamflow trends can be explained primarily by precipitation. Precipitation-removed streamflow had fewer trends during the more recent analysis period of WYs 1980–2013 than WYs 1945–2013 for all streamgages in eastern South Dakota. Upward trends in residuals for March– May mean streamflow were indicated for Skunk Creek at Sioux Falls and the Big Sioux River at Akron, but trends in residuals were not significant at the remaining streamgages. For the streamgages with significant trends in residual streamflow (such as the streamgage on the Whetstone River and streamgages in the Big Sioux River Basin), land-use changes likely are minor factors, with the main factors probably being changes in the timing and frequency of large precipitation events and persistently wetter antecedent conditions. Changes in the relation between precipitation and streamflow since 1945 were evident when considering the runoff efficiency of the watershed. For example, the streamflow response to annual precipitation of 25 inches for the James River near Scotland increased from approximately 1,000 cubic feet per second for WYs 1945–1990 to about 2,500 cubic feet per second for WYs 1991–2013. The importance of antecedent conditions on annual mean streamflow also was indicated by the significance of the multiple linear regression coefficients of annual mean streamflow and precipitation from preceding water years for all but one streamgage. In addition, rising groundwater levels are present in wells in eastern South Dakota, particularly since the 1980s.

South Dakota↗

USGS2023

Dietary comparison of age-0 sturgeon (Scaphirhynchus sp.) between upper and lower Missouri River basins

Understanding potential limiting factors affecting population growth of the endangered pallid sturgeon, Scaphirhynchus albus, is important in the upper (UMOR) and lower Missouri River (LMOR) basins. The UMOR is upstream of several reservoirs and generally has more natural habitat features, whereas the LMOR is downstream of these reservoirs and has been channelized to support navigation. In both sections, pallid sturgeon recruitment to age-1 is a concern, but hypothesized for different reasons. One hypothesis in the LMOR centers on food limitation for age-0 fish, which is not considered an issue in the UMOR, but evaluating this hypothesis is challenging given the rarity of age-0 pallid sturgeon. As a result, the related, more abundant shovelnose sturgeon ( S. platorhynchus ) has been considered as a potential surrogate to assess food-related hypotheses. Thus, the purpose of our study was to compare diets of age-0 sturgeon captured in 2016 from three reaches in the LMOR (Copeland, Langdon, and Lexington) with individuals captured from a reach in the UMOR (Williston) during the same year to provide additional context regarding potential food limitation in the LMOR. Consumption percentage (prey weight in the gut as a percentage of body weight) was similar among all reaches, but diet composition was different for the most downstream reach in the LMOR. Age-0 sturgeon in the UMOR reach as well as the two upstream LMOR reaches primarily consumed Diptera larvae along with Ephemeroptera nymphs. In contrast, age-0 sturgeon in the most downstream LMOR reach (Lexington) almost exclusively consumed Diptera larvae. These results may provide information on relative differences in prey availability between Lexington and the other upstream reaches but the similarity in consumption percentage values across all reaches provide further evidence that age-0 sturgeon are not food limited in the LMOR.

Upper and lower Missouri River basins↗

USGS2016

Temporal trends and stationarity in annual peak flow and peak-flow timing for selected long-term streamflow-gaging stations in or near Montana through water year 2011: Chapter B in Montana StreamStats

A large-scale study by the U.S. Geological Survey, in cooperation with the Montana Department of Transportation and the Montana Department of Natural Resources and Conservation, was done to investigate general patterns in peak-flow temporal trends and stationarity through water year 2011 for 24 long-term streamflow-gaging stations (hereinafter referred to as gaging stations) in Montana. Hereinafter, all years refer to water years; a water year is the 12-month period from October 1 through September 30 and is designated by the year in which it ends. The primary focus of the study was to identify general patterns in peak-flow temporal trends and stationarity that are relevant to application of peak-flow frequency analyses within a statewide gaging-station network. Temporal trends were analyzed for two hydrologic variables: annual peak flow and peak-flow timing. Annual peak flow is the maximum instantaneous discharge, in cubic feet per second, recorded each year a gaging station was operated. Peak-flow timing is the day of the annual peak flow (hereinafter referred to as day of peak), recorded each year a gaging station was operated. Study results provide evidence that annual peak flow for most of the long-term gaging stations can be reasonably considered as stationary for application of peak-flow frequency analyses within a statewide gaging station network. Upward trends in annual peak flow during 1930–76 generally were stronger than downward trends during 1967–2011 for most long-term gaging stations. Statistical distributions of annual peak flow generally were similar among three summary time periods (1930–78, 1979–2011, and the entire period of record). However, for two low-elevation gaging stations in eastern Montana (Poplar River at international boundary [gaging station 06178000] and Powder River at Moorhead, Montana [gaging station 06324500]), substantial downward trends in annual peak flow during 1967–2011 were of similar or stronger magnitude than the upward trends during 1930–76, and the annual-peak-flow medians for 1979–2011 were substantially lower than the medians for the entire period of record. For peak-flow timing for most long-term gaging stations, differences in trends between 1930–76 and 1967–2011 are variable and not particularly strong. Statistical distributions generally are similar among the summary time periods. However, for two high-elevation gaging stations on a Missouri River headwater tributary (Gallatin River near Gallatin Gateway, Montana [gaging station 06043500] and Gallatin River at Logan, Montana [gaging station 06052500]) and for five high-elevation gaging stations in the Yellowstone River Basin (Yellowstone River at Corwin Springs, Montana [gaging station 06191500], Yellowstone River near Livingston, Montana [gaging station 06192500], Clarks Fork Yellowstone River near Belfry, Montana [gaging station 06207500], Clarks Fork Yellowstone River at Edgar, Montana [gaging station 06208500], and Yellowstone River at Billings, Montana [gaging station 06214500]) downward trends in peak-flow timing during 1967–2011 generally were stronger than upward trends during 1930–1976, and day-of-peak medians for 1979–2011 were considerably less than medians for 1930–78. The downward trends in peak-flow timing for 1967–2011 indicate that the timing of annual peak flows changed from later in the year to earlier in the year. For the seven high-elevation gaging stations, the mean change during 1967–2011 was about 13 days (range of 8 to 22 days). For most of the high-elevation gaging stations in the Missouri River headwaters, Yellowstone River Basin, and Columbia River Basin, there was general correspondence between trend patterns for annual peak flow and trend patterns for peak-flow timing; that is, during periods when there were upward trends in annual peak flow, there generally also were upward trends in peak-flow timing. Conversely, during periods when there were downward trends in annual peak flow, there generally also were downward trends in peak-flow timing. The two low-elevation gaging stations in eastern Montana (Poplar River at international boundary [gaging station 06178000] and Powder River at Moorhead, Montana [gaging station 06324500]) had considerable changes in annual-peakflow characteristics after the mid-1970s, which might provide evidence of potential nonstationarity in the peak-flow records. The two low-elevation gaging stations that have potential nonstationarity are located in drainage basins that are strongly affected by agricultural activities that potentially affect the hydrologic regimes. Primary agricultural activities that might alter natural hydrologic conditions include construction of small impoundments (primarily for stock-watering purposes) and irrigation diversions. Temporal variability in these activities might contribute to the potential nonstationarity issues. Changes in climatic characteristics after the mid-1970s also possibly contribute to the potential nonstationarity issues. Lack of considerable indication of potential nonstationarity in annual peak flow for the other long-term gaging stations in this study might indicate that climatic changes have been more pronounced with respect to effects on peak flows in low elevation areas in eastern Montana than in areas represented by the other long-term gaging stations. Another possibility is that climatic changes after the mid-1970s are exacerbated in low-elevation areas where small-impoundment development and potential effects of irrigation diversions might be more extensive.

Montana↗

USGS2021

Incorporating water quality analysis into navigation assessments as demonstrated in the Mississippi River Basin

A description of historical and ambient water quality conditions is often required as part of navigational studies. This paper describes a series of tools developed by the USGS that can aid navigation managers in developing water quality assessments. The tools use R, a statistical software program, and provide methods to retrieve historical streamflow and water quality data, summarize observations, model concentrations and fluxes, and estimate seasonal, annual, and decadal trends. The utility of these tools is demonstrated by providing an analysis of the seasonal variability and long-term trends of nitrate plus nitrite, orthophosphate, and suspended sediment concentrations and fluxes at nine sites in the Mississippi River Basin. Trends in annual mean concentration and flux showed fairly stable nitrate plus nitrite at most of the nine sites, with increases in the Upper Mississippi and Missouri Rivers and decreases on the Illinois River over a 40-year period beginning in 1980. Orthophosphate concentration or flux increased at almost all sites over a similar time period. Conversely, a concurrent steady decline in suspended sediment concentrations and fluxes was noted at sites throughout the basin.

Mississippi River Basin↗

USGS1995

Water-quality assessment of the Ozark Plateaus study unit, Arkansas, Kansas, Missouri, and Oklahoma: Analysis of information on nutrients, suspended sediment, and suspended solids, 1970-92

Water-quality data collected during water years 1970-90 (October 1 to September 30) for 83 surface-water sites and during 1970-92 for 395 ground-water sites in the 48,000 square mile Ozark Plateaus study unit of the National Water Quality Assessment Program were analyzed using selected descriptive and statistical methods. The water- quality data include nutrient (nitrogen and phosphorus), suspended sediment, and suspended- solids data, and ancillary information such as fertilizer use, animal waste, sewage treatment plant, and land use. Statistically significant differences exist in surface-water quality that can be attributed to physiography, land use, and other effects. The sites that were considered to be substantially affected by sewage treatment plants had the largest concentrations of nutrients. Nutrient concentrations generally were larger at sites associated with agricultural basins than at sites associated with forested basins. Statistically significant differences existed in the quality of ground water that can be attributed to hydrogeologic and land-use effects. Nutrient concentrations generally were largest where the water source is indicated to be shallow in origin and where parts of the hydrogeologic units are in agricultural land-use areas. Water quality has changed at several surface-water sites since 1970. Nutrient concentrations appear to have increased at some sites and decreased at other sites. Causes of these apparent trends are not known, but many of the sites with apparent trends are in agricultural areas. Surface-water loads of nutrients and suspended sediment were affected by several factors including streamflow, climate, drainage area, reservoir operation, and inputs from point and nonpoint sources. Annual loads were largest in large basins, with large inputs of nutrients or sediment during periods of high streamflows at locations where reservoir operation effects are not substantial.

Arkansas, Kansas, Missouri, Oklahoma↗