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At least 145 records · Page 8Linked to original sources

Optimal exploitation strategies for an animal population in a stochastic serially correlated environment

Optimal exploitation strategies were studied for an animal population in a stochastic, serially correlated environment. This is a general case and encompasses a number of important cases as simplifications. Data on the mallard (Anas platyrhynchos) were used to explore the exploitation strategies and test several hypotheses because relatively much is known concerning the life history and general ecology of this species and extensive empirical data are available for analysis. The number of small ponds on the central breeding grounds was used as an index to the state of the environment. Desirable properties of an optimal exploitation strategy were defined. A mathematical model was formulated to provide a synthesis of the existing literature, estimates of parameters developed from an analysis of data, and hypotheses regarding the specific effect of exploitation on total survival. Both the literature and the analysis of data were inconclusive concerning the effect of exploitation on survival. Therefore, alternative hypotheses were formulated: (1) exploitation mortality represents a largely additive form of mortality, or (2 ) exploitation mortality is compensatory with other forms of mortality, at least to some threshold level. Models incorporating these two hypotheses were formulated as stochastic dynamic programming models and optimal exploitation strategies were derived numerically on a digital computer. Optimal exploitation strategies were found to exist under rather general conditions. Direct feedback control was an integral component in the optimal decision-making process. Optimal exploitation was found to be substantially different depending upon the hypothesis regarding the effect of exploitation on the population. Assuming that exploitation is largely an additive force of mortality, optimal exploitation decisions are a convex function of the size of the breeding population and a linear or slightly concave function of the environmental conditions. Optimal exploitation under this hypothesis tends to reduce the variance of the size of the population. Under the hypothesis of compensatory mortality forces, optimal exploitation decisions are approximately linearly related to the size of the breeding population. Environmental variables may be somewhat more important than the size of the breeding population to the production of young mallards. In contrast, the size of the breeding population appears to be more important in the exploitation process than is the state of the environment. The form of the exploitation strategy appears to be relatively insensitive to small changes in the production rate. In general, the relative importance of the size of the breeding population may decrease as fecundity increases. The optimal level of exploitation in year t must be based on the observed size of the population and the state of the environment in year t unless the dynamics of the population, the state of the environment, and the result of the exploitation decisions are completely deterministic. Exploitation based on an average harvest, harvest rate, or designed to maintain a constant breeding population size is inefficient.

Dissertation Abstracts International

Probabilistic application of an integrated catchment-estuary-coastal system model to assess the evolution of inlet-interrupted coasts over the 21st century

Inlet-interrupted sandy coasts are dynamic and complex coastal systems with continuously evolving geomorphological behaviors under the influences of both climate change and human activities. These coastal systems are of great importance to society (e.g., providing habitats, navigation, and recreational activities) and are affected by both oceanic and terrestrial processes. Therefore, the evolution of these inlet-interrupted coasts is better assessed by considering the entirety of the Catchment-Estuary-Coastal (CEC) systems, under plausible future scenarios for climate change and increasing pressures due to population growth and human activities. Such a holistic assessment of the long-term evolution of CEC systems can be achieved via reduced-complexity modeling techniques, which are also ably quantifying the uncertainties associated with the projections due to their lower simulation times. Here, we develop a novel probabilistic modeling framework to quantify the input-driven uncertainties associated with the evolution of CEC systems over the 21 st century. In this new approach, probabilistic assessment of the evolution of inlet-interrupted coasts is achieved by (1) probabilistically computing the exchange sediment volume between the inlet-estuary system and its adjacent coast, and (2) distributing the computed sediment volumes along the inlet-interrupted coast. The model is applied at three case study sites: Alsea estuary (United States), Dyfi estuary (United Kingdom), and Kalutara inlet (Sri Lanka). Model results indicate that there are significant uncertainties in projected volume exchange at all the CEC systems (min-max range of 2.0 million cubic meters in 2100 for RCP 8.5), and the uncertainties in these projected volumes illustrate the need for probabilistic modeling approaches to evaluate the long-term evolution of CEC systems. A comparison of 50 th percentile probabilistic projections with deterministic estimates shows that the deterministic approach overestimates the sediment volume exchange in 2100 by 15–30% at Alsea and Kalutara estuary systems. Projections of coastline change obtained for the case study sites show that accounting for all key processes governing coastline change along inlet-interrupted coasts in computing coastline change results in projections that are between 20 and 134% greater than the projections that would be obtained if only the Bruun effect were taken into account, underlining the inaccuracies associated with using the Bruun rule at inlet-interrupted coasts.

Frontiers in Applied Mathematics and Statistics

SEAWAT Version 4: A Computer Program for Simulation of Multi-Species Solute and Heat Transport

The SEAWAT program is a coupled version of MODFLOW and MT3DMS designed to simulate three-dimensional, variable-density, saturated ground-water flow. Flexible equations were added to the program to allow fluid density to be calculated as a function of one or more MT3DMS species. Fluid density may also be calculated as a function of fluid pressure. The effect of fluid viscosity variations on ground-water flow was included as an option. Fluid viscosity can be calculated as a function of one or more MT3DMS species, and the program includes additional functions for representing the dependence on temperature. Although MT3DMS and SEAWAT are not explicitly designed to simulate heat transport, temperature can be simulated as one of the species by entering appropriate transport coefficients. For example, the process of heat conduction is mathematically analogous to Fickian diffusion. Heat conduction can be represented in SEAWAT by assigning a thermal diffusivity for the temperature species (instead of a molecular diffusion coefficient for a solute species). Heat exchange with the solid matrix can be treated in a similar manner by using the mathematically equivalent process of solute sorption. By combining flexible equations for fluid density and viscosity with multi-species transport, SEAWAT Version 4 represents variable-density ground-water flow coupled with multi-species solute and heat transport. SEAWAT Version 4 is based on MODFLOW-2000 and MT3DMS and retains all of the functionality of SEAWAT-2000. SEAWAT Version 4 also supports new simulation options for coupling flow and transport, and for representing constant-head boundaries. In previous versions of SEAWAT, the flow equation was solved for every transport timestep, regardless of whether or not there was a large change in fluid density. A new option was implemented in SEAWAT Version 4 that allows users to control how often the flow field is updated. New options were also implemented for representing constant-head boundaries with the Time-Variant Constant-Head (CHD) Package. These options allow for increased flexibility when using CHD flow boundaries with the zero-dispersive flux solute boundaries implemented by MT3DMS at constant-head cells. This report contains revised input instructions for the MT3DMS Dispersion (DSP) Package, Variable-Density Flow (VDF) Package, Viscosity (VSC) Package, and CHD Package. The report concludes with seven cases of an example problem designed to highlight many of the new features.

Techniques and Methods

Periodic oscillation and tri-stability in mutualism systems with two consumers

This paper considers mutualistic interactions between two consumers, in which one consumer can consume a resource only by exchange of service for service with the other. By rigorous analysis on the one-resource and two-consumer model with Holling-type I response, we show periodic oscillations and tri-stability in the mutualism system: when their initial densities decrease, the consumers' interaction outcomes would change from coexistence in periodic oscillation, to persistence at a steady state, and to extinction. Under certain conditions, we also show two types of bi-stability in the system: the consumers would change from coexisting in periodic oscillation (resp. at a steady state) to going to extinction when their initial densities decrease. Then we analyze a modified system with Holling-type II response. Based on theoretical analysis and numerical computation, we show that there also exist tri-stability and two types of bi-stability in this system. Moreover, it is shown that varying the degree of obligation can lead to transition of interaction outcomes between coexistence in periodic oscillation (resp. at a steady state) and extinction of both consumers. These results are important in understanding complexity in mutualism.

Journal of Mathematical Analysis and Applications

Wave propagation in layered soil deposits

Recent advances in the general theory of viscoelastic waves and rays in layered media provide a rigorous mathematical framework for site-specific, soil-response models used for earthquake resistant design. The advances provide general closed-form anelastic solutions for the classic problems of the response of a stack of soil layers to S and P waves, ray theory for reflected and refracted waves, Rayleigh- and Love-Type surface waves, and head waves. These general solutions valid for anelastic media regardless of the amount of material damping yield new insights regarding the characteristics of seismic waves and their ray paths that are not provided by conventional models. They provide corresponding numerical ground-response models and ray-tracing computation algorithms that account for changes in velocity and attenuation of anelastic waves associated with changes in inhomogeneity of the waves induced by anelastic soil and soil-rock boundaries. These anelastic effects manifest themselves as variations in amplitude response, amplitude attenuation, raypath location, and travel time as observed at the Earth’s surface. Implications of these anelastic effects for soil-response models used for earthquake resistant design are provided herein.

Conference Paper

Calibration of imperfect geophysical models by multiple satellite interferograms with measurement bias

Model calibration consists of using experimental or field data to estimate the unknown parameters of a mathematical model. The presence of model discrepancy and measurement bias in the data complicates this task. Satellite interferograms, for instance, are widely used for calibrating geophysical models in geological hazard quantification. In this work, we used satellite interferograms to relate ground deformation observations to the properties of the magma chamber at K i¯lauea Volcano in Hawai‘i. We derived closed-form marginal likelihoods and implemented posterior sampling procedures that simultaneously estimate the model discrepancy of physical models, and the measurement bias from the atmospheric error in satellite interferograms. We found that model calibration by aggregating multiple interferograms and downsampling the pixels in the interferograms can reduce the computation complexity compared to calibration approaches based on multiple data sets. The conditions that lead to no loss of information from data aggregation and downsampling are studied. Simulation illustrates that both discrepancy and measurement bias can be estimated, and real applications demonstrate that modeling both effects helps obtain a reliable estimation of a physical model’s unobserved parameters and enhance its predictive accuracy. We implement the computational tools in the RobustCalibration package available on CRAN.

Technometrics

Forecasting runout of rock and debris avalanches

Physically based mathematical models and statistically based empirical equations each may provide useful means of forecasting runout of rock and debris avalanches. This paper compares the foundations, strengths, and limitations of a physically based model and a statistically based forecasting method, both of which were developed to predict runout across three-dimensional topography. The chief advantage of the physically based model results from its ties to physical conservation laws and well-tested axioms of soil and rock mechanics, such as the Coulomb friction rule and effective-stress principle. The output of this model provides detailed information about the dynamics of avalanche runout, at the expense of high demands for accurate input data, numerical computation, and experimental testing. In comparison, the statistical method requires relatively modest computation and no input data except identification of prospective avalanche source areas and a range of postulated avalanche volumes. Like the physically based model, the statistical method yields maps of predicted runout, but it provides no information on runout dynamics. Although the two methods differ significantly in their structure and objectives, insights gained from one method can aid refinement of the other.

Conference Paper

Ground-water and surface-water flow and estimated water budget for Lake Seminole, southwestern Georgia and northwestern Florida

Lake Seminole is a 37,600-acre impoundment formed at the confluence of the Flint and Chattahoochee Rivers along the Georgia?Florida State line. Outflow from Lake Seminole through Jim Woodruff Lock and Dam provides headwater to the Apalachicola River, which is a major supply of freshwater, nutrients, and detritus to ecosystems downstream. These rivers,together with their tributaries, are hydraulically connected to karst limestone units that constitute most of the Upper Floridan aquifer and to a chemically weathered residuum of undifferentiated overburden. The ground-water flow system near Lake Seminole consists of the Upper Floridan aquifer and undifferentiated overburden. The aquifer is confined below by low-permeability sediments of the Lisbon Formation and, generally, is semiconfined above by undifferentiated overburden. Ground-water flow within the Upper Floridan aquifer is unconfined or semiconfined and discharges at discrete points by springflow or diffuse leakage into streams and other surface-water bodies. The high degree of connectivity between the Upper Floridan aquifer and surface-water bodies is limited to the upper Eocene Ocala Limestone and younger units that are in contact with streams in the Lake Seminole area. The impoundment of Lake Seminole inundated natural stream channels and other low-lying areas near streams and raised the water-level altitude of the Upper Floridan aquifer near the lake to nearly that of the lake, about 77 feet. Surface-water inflow from the Chattahoochee and Flint Rivers and Spring Creek and outflow to the Apalachicola River through Jim Woodruff Lock and Dam dominate the water budget for Lake Seminole. About 81 percent of the total water-budget inflow consists of surface water; about 18 percent is ground water, and the remaining 1 percent is lake precipitation. Similarly, lake outflow consists of about 89 percent surface water, as flow to the Apalachicola River through Jim Woodruff Lock and Dam, about 4 percent ground water, and about 2 percent lake evaporation. Measurement error and uncertainty in flux calculations cause a flow imbalance of about 4 percent between inflow and outflow water-budget components. Most of this error can be attributed to errors in estimating ground-water discharge from the lake, which was calculated using a ground-water model calibrated to October 1986 conditions for the entire Apalachicola?Chattahoochee?Flint River Basin and not just the area around Lake Seminole. Evaporation rates were determined using the preferred, but mathematically complex, energy budget and five empirical equations: Priestley-Taylor, Penman, DeBruin-Keijman, Papadakis, and the Priestley-Taylor used by the Georgia Automated Environmental Monitoring Network. Empirical equations require a significant amount of data but are relatively easy to calculate and compare well to long-term average annual (April 2000?March 2001) pan evaporation, which is 65 inches. Calculated annual lake evaporation, for the study period, using the energy-budget method was 67.2 inches, which overestimated long-term average annual pan evaporation by 2.2 inches. The empirical equations did not compare well with the energy-budget method during the 18-month study period, with average differences in computed evaporation using each equation ranging from 8 to 26 percent. The empirical equations also compared poorly with long-term average annual pan evaporation, with average differences in evaporation ranging from 3 to 23 percent. Energy budget and long-term average annual pan evaporation estimates did compare well, with only a 3-percent difference between estimates. Monthly evaporation estimates using all methods ranged from 0.7 to 9.5 inches and were lowest during December 2000 and highest during May 2000. Although the energy budget is generally the preferred method, the dominance of surface water in the Lake Seminole water budget makes the method inaccurate and difficult to use, because surface water makes up m

Florida, Georgia

Use of RORA for Complex Ground-Water Flow Conditions

The RORA computer program for estimating recharge is based on a condition in which ground water flows perpendicular to the nearest stream that receives ground-water discharge. The method, therefore, does not explicitly account for the ground-water-flow component that is parallel to the stream. Hypothetical finite-difference simulations are used to demonstrate effects of complex flow conditions that consist of two components: one that is perpendicular to the stream and one that is parallel to the stream. Results of the simulations indicate that the RORA program can be used if certain constraints are applied in the estimation of the recession index, an input variable to the program. These constraints apply to a mathematical formulation based on aquifer properties, recession of ground-water levels, and recession of streamflow.

Water-Resources Investigations Report

A transient laboratory method for determining the hydraulic properties of 'tight' rocks-I. Theory

Transient pulse testing has been employed increasingly in the laboratory to measure the hydraulic properties of rock samples with low permeability. Several investigators have proposed a mathematical model in terms of an initial-boundary value problem to describe fluid flow in a transient pulse test. However, the solution of this problem has not been available. In analyzing data from the transient pulse test, previous investigators have either employed analytical solutions that are derived with the use of additional, restrictive assumptions, or have resorted to numerical methods. In Part I of this paper, a general, analytical solution for the transient pulse test is presented. This solution is graphically illustrated by plots of dimensionless variables for several cases of interest. The solution is shown to contain, as limiting cases, the more restrictive analytical solutions that the previous investigators have derived. A method of computing both the permeability and specific storage of the test sample from experimental data will be presented in Part II.

International Journal of Rock Mechanics and Mining

Steady and intermittent slipping in a model of landslide motion regulated by pore-pressure feedback

This paper studies a parsimonious model of landslide motion, which consists of the one-dimensional diffusion equation (for pore pressure) coupled through a boundary condition to a first-order ODE (Newton's second law). Velocity weakening of sliding friction gives rise to nonlinearity in the model. Analysis shows that solutions of the model equations exhibit a subcritical Hopf bifurcation in which stable, steady sliding can transition to cyclical, stick-slip motion. Numerical computations confirm the analytical predictions of the parameter values at which bifurcation occurs. The existence of stick-slip behavior in part of the parameter space is particularly noteworthy because, unlike stick-slip behavior in classical models , here it arises in the absence of a reversible (elastic) driving force. Instead, the driving force is static (gravitational), mediated by the effects of pore-pressure diffusion on frictional resistance.

SIAM Journal on Applied Mathematics

Hydrograph simulation models of the Hillsborough and Alafia Rivers, Florida: a preliminary report

Mathematical (digital) models that simulate flood hydrographs from rainfall records have been developed for the following gaging stations in the Hillsborough and Alafia River basins of west-central Florida: Hillsborough River near Tampa, Alafia River at Lithia, and north Prong Alafia River near Keysville. These models, which were developed from historical streamflow and and rainfall records, are based on rainfall-runoff and unit-hydrograph procedures involving an arbitrary separation of the flood hydrograph. These models assume the flood hydrograph to be composed of only two flow components, direct (storm) runoff, and base flow. Expressions describing these two flow components are derived from streamflow and rainfall records and are combined analytically to form algorithms (models), which are programmed for processing on a digital computing system. Most Hillsborough and Alafia River flood discharges can be simulated with expected relative errors less than or equal to 30 percent and flood peaks can be simulated with average relative errors less than 15 percent. Because of the inadequate rainfall network that is used in obtaining input data for the North Prong Alafia River model, simulated peaks are frequently in error by more than 40 percent, particularly for storms having highly variable areal rainfall distribution. Simulation errors are the result of rainfall sample errors and, to a lesser extent, model inadequacy. Data errors associated with the determination of mean basin precipitation are the result of the small number and poor areal distribution of rainfall stations available for use in the study. Model inadequacy, however, is attributed to the basic underlying theory, particularly the rainfall-runoff relation. These models broaden and enhance existing water-management capabilities within these basins by allowing the establishment and implementation of programs providing for continued development in these areas. Specifically, the models serve not only as a basis for forecasting floods, but also for simulating hydrologic information needed in flood-plain mapping and delineating and evaluating alternative flood control and abatement plans.

Florida

Documentation of a deep percolation model for estimating ground-water recharge

A deep percolation model, which operates on a daily basis, was developed to estimate long-term average groundwater recharge from precipitation. It has been designed primarily to simulate recharge in large areas with variable weather, soils, and land uses, but it can also be used at any scale. The physical and mathematical concepts of the deep percolation model, its subroutines and data requirements, and input data sequence and formats are documented. The physical processes simulated are soil moisture accumulation, evaporation from bare soil, plant transpiration, surface water runoff, snow accumulation and melt, and accumulation and evaporation of intercepted precipitation. The minimum data sets for the operation of the model are daily values of precipitation and maximum and minimum air temperature, soil thickness and available water capacity, soil texture, and land use. Long-term average annual precipitation, actual daily stream discharge, monthly estimates of base flow, Soil Conservation Service surface runoff curve numbers, land surface altitude-slope-aspect, and temperature lapse rates are optional. The program is written in the FORTRAN 77 language with no enhancements and should run on most computer systems without modifications. Documentation has been prepared so that program modifications may be made for inclusions of additional physical processes or deletion of ones not considered important. (Author 's abstract)

Open-File Report

Conversion and comparison of the mathematical, three-dimensional, finite-difference, ground-water flow model to the modular, three-dimensional, finite-difference, ground-water flow model for the Tesuque aquifer system in northern New Mexico

The three-dimensional finite-difference groundwater model (using a mathematical groundwater flow code) of the Tesuque aquifer system in northern New Mexico was converted to run using the U.S. Geological Survey 's modular groundwater flow code. Results from the final versions of the predevelopment and 1947 to 2080 transient simulations of the two models are compared. A correlation coefficient of 0.9905 was obtained for the match in block-by-block head-dependent fluxes for predevelopment conditions. There are, however, significant differences in at least two specific cases. In the first case, a difference is associated with the net loss from the Pojoaque River and its tributaries to the aquifer. The net loss by the river is given as 1.134 cu ft/sec using the original groundwater model, which is 38.1% less than the net loss by the river of 1.8319 cu ft/sec computed in this study. In the second case, the large difference is computed for the transient decline in the hydraulic head of a model block near Tesuque Pueblo. The hydraulic-head decline by 2080 is, using the original model, 249 ft, which is 14.7% less than the hydraulic head of 292 ft computed by this study. In general, the differences between the two sets of results are not large enough to lead to different conclusions regarding the behavior of the system at steady state or when pumped. (USGS)

Open-File Report

Hydraulic modeling development and application in water resources engineering

The use of modeling has become widespread in water resources engineering and science to study rivers, lakes, estuaries, and coastal regions. For example, computer models are commonly used to forecast anthropogenic effects on the environment, and to help provide advanced mitigation measures against catastrophic events such as natural and dam-break floods. Linking hydraulic models to vegetation and habitat models has expanded their use in multidisciplinary applications to the riparian corridor. Implementation of these models in software packages on personal desktop computers has made them accessible to the general engineering community, and their use has been popularized by the need of minimal training due to intuitive graphical user interface front ends. Models are, however, complex and nontrivial, to the extent that even common terminology is sometimes ambiguous and often applied incorrectly. In fact, many efforts are currently under way in order to standardize terminology and offer guidelines for good practice, but none has yet reached unanimous acceptance. This chapter provides a view of the elements involved in modeling surface flows for the application in environmental water resources engineering. It presents the concepts and steps necessary for rational model development and use by starting with the exploration of the ideas involved in defining a model. Tangible form of those ideas is provided by the development of a mathematical and corresponding numerical hydraulic model, which is given with a substantial amount of detail. The issues of model deployment in a practical and productive work environment are also addressed. The chapter ends by presenting a few model applications highlighting the need for good quality control in model validation.

Book chapter

Ground water in northeastern Louisville, Kentucky with reference to induced infiltration

In cooperation with the city of Louisville, Ky., the U. S. Geological Survey made a detailed investigation during the period February 1945 to March 1947 of the ground-water resources of a 3-square-mile area along the Ohio River north-east of Louisville. Test drilling shows that the principal aquifer consists of about 80 feet of glacial-outwash sands and gravels lying in an old river channel which was cut into rocks of Ordovician, Silurian, and Devonian age. The total ground-water storage in the area is estimated as 7 billion gallons. The ground-water levels are affected by changes in river elevation, by rainfall, and by the effects of pumping in the downtown part of Louisville 3 miles to the southwest. In the northeastern part of the area the flow of ground water, as defined by contour maps, is toward the river, and in the southwestern part of the area it is from the river toward the downtown area of overpumping. Ground water in the area has an average temperature of 56° F. The water, which is moderately hard, is suitable for domestic and industrial uses. Analysis of a pumping test made during the investigation proves that infiltration supplies can be developed. Studies to determine the degree of connection between the river and aquifer were made on the basis of chemical analyses, sections showing temperature distribution in the aquifer during the pumping test, shapes of water-level profiles in the test area, and shapes of time-drawdown curves for a number of observation wells. Quantitative studies to evaluate the hydrologic constants of the aquifer were made by both graphical and mathematical methods. The transmissibility was determined as 121,000 gpd/ft in the test area; the distance to the line source, 400 feet; and the coefficient of storage, 0.0003. A comparison of river-level fluctuations and water-level fluctuations in observation wells shows that conditions along the 6.4-mile reach of river are not greatly different from those at the site of the pumping test. It is estimated that under adverse temperature and river-stage conditions infiltration supplies could be developed to the extent of 280 million gpd in the entire 6.4-mile reach investigated; at average river-water temperature (59° F) about 400 million gpd could be developed. Diagrams were drawn showing the estimated yield of wells of different radii, at various distances from the river, and at various spacings. In making the computations allowance was made for screen losses, dewatering of the aquifer, partial penetration of wells, location wells, eccentricity of large wells, and interference among wells.

Kentucky

lasertram: A Python library for time resolved analysis of laser ablation inductively coupled plasma mass spectrometry data

Laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) data has a wide variety of uses in the geosciences for in-situ chemical analysis of complex natural materials. Improvements to instrument capabilities and operating software have drastically reduced the time required to generate large volumes of data relative to previous methodologies. Raw data from LA-ICP-MS, however, is in counts per unit time (typically counts per second), not elemental concentrations and converting these count ratesto concentrations requires additional processing. For complex materials where the ablated volume may contain a range of material compositions, a moderate amount of user input is also required if appropriate concentrations are to be accurately calculated. In geologic materials such as glasses and minerals that potentially have numerous heterogeneities (e.g., microlites or other inclusions) within them, this is typically determiningwhether the total ablation signal should be filtered to remove these heterogeneities. This necessitates that the LA-ICP-MS data processing pipeline is one that is not automated, but is also designed to enable rapid and efficient processing of large volumes of data. Here we introduce , a Python library for the time resolved analysis of LA-ICP-MS data. We outline its mathematical theory, code structure, and provide an example of how it can be used to provide the time resolved analysis necessitated by LA-ICP-MS data of complex geologic materials. Throughout the pipeline we show how metadata and data are incrementally added to the objects created such that virtually any aspect of an experiment may be interrogated and its quality assessed. We also show, that when combined with other Python libraries for building graphical user interfaces, it can be utilized outside of a pure scripting environment. can be found at https://doi.org/10.5066/P1DZUR3Z

Applied Computing and Geosciences

Response of selected binomial coefficients to varying degrees of matrix sparseness and to matrices with known data interrelationships

Numerous departures from ideal relationships are revealed by Monte Carlo simulations of widely accepted binomial coefficients. For example, simulations incorporating varying levels of matrix sparseness (presence of zeros indicating lack of data) and computation of expected values reveal that not only are all common coefficients influenced by zero data, but also that some coefficients do not discriminate between sparse or dense matrices (few zero data). Such coefficients computationally merge mutually shared and mutually absent information and do not exploit all the information incorporated within the standard 2 ?? 2 contingency table; therefore, the commonly used formulae for such coefficients are more complicated than the actual range of values produced. Other coefficients do differentiate between mutual presences and absences; however, a number of these coefficients do not demonstrate a linear relationship to matrix sparseness. Finally, simulations using nonrandom matrices with known degrees of row-by-row similarities signify that several coefficients either do not display a reasonable range of values or are nonlinear with respect to known relationships within the data. Analyses with nonrandom matrices yield clues as to the utility of certain coefficients for specific applications. For example, coefficients such as Jaccard, Dice, and Baroni-Urbani and Buser are useful if correction of sparseness is desired, whereas the Russell-Rao coefficient is useful when sparseness correction is not desired. ?? 1989 International Association for Mathematical Geology.

Mathematical Geology