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USGS2015

Observations of territorial breeding common ravens caching eggs of greater sage-grouse

Previous investigations using continuous video monitoring of greater sage-grouse Centrocercus urophasianus nests have unambiguously identified common ravens Corvus corax as an important egg predator within the western United States. The quantity of greater sage-grouse eggs an individual common raven consumes during the nesting period and the extent to which common ravens actively hunt greater sage-grouse nests are largely unknown. However, some evidence suggests that territorial breeding common ravens, rather than nonbreeding transients, are most likely responsible for nest depredations. We describe greater sage-grouse egg depredation observations obtained opportunistically from three common raven nests located in Idaho and Nevada where depredated greater sage-grouse eggs were found at or in the immediate vicinity of the nest site, including the caching of eggs in nearby rock crevices. We opportunistically monitored these nests by counting and removing depredated eggs and shell fragments from the nest sites during each visit to determine the extent to which the common raven pairs preyed on greater sage-grouse eggs. To our knowledge, our observations represent the first evidence that breeding, territorial pairs of common ravens cache greater sage-grouse eggs and are capable of depredating multiple greater sage-grouse nests.

Idaho, Nevada↗

USGS2015

Host–parasite behavioral interactions in a recently introduced, whooping crane population

The whooping crane Grus americana has a long conservation history, but despite multiple attempts across North America, introduction success is lacking. Recently introduced, captively reared whooping cranes have had periods of poor reproductive performance in central Wisconsin that sometimes coincided with black fly (Diptera: Simuliidae) emergences. Sandhill crane Grus canadensis reproductive performance in central Wisconsin is approximately double that of whooping cranes. We used comfort behaviors as a measure of black fly harassment to infer whether behavioral differences existed between nesting sandhill cranes and nesting whooping cranes and between successful and unsuccessful whooping crane pairs. To further explore the interaction between black flies and incubating whooping cranes, we examined differences in behaviors between incubating birds and their off-nest mates. Compared to their off-nest mates, incubating whooping cranes exhibited elevated comfort behaviors, suggesting a bird at a nest may experience greater harassment from black flies. Sandhill cranes had elevated head-flicks over whooping cranes. Whooping cranes exhibited more head-rubs than sandhill cranes, and successful whooping crane pairs had elevated head-rubs over pairs that deserted their nests. Behavioral differences between sandhill cranes and whooping cranes as well as differences in reproductive performance, could be explained by exposure to local breeding conditions. Whereas sandhill cranes have nested in the area for hundreds, if not thousands, of years, whooping cranes were only recently introduced to the area. Behavioral differences between the species as well as those between successful and unsuccessful whooping crane pairs could also be explained by the effect of captive exposure, which could affect all whooping crane introductions.

Wisconsin↗

USGS2015

Assessment of environmental DNA for detecting presence of imperiled aquatic amphibian species in isolated wetlands

Environmental DNA (eDNA) is an emerging tool that allows low-impact sampling for aquatic species by isolating DNA from water samples and screening for DNA sequences specific to species of interest. However, researchers have not tested this method in naturally acidic wetlands that provide breeding habitat for a number of imperiled species, including the frosted salamander ( Ambystoma cingulatum ), reticulated flatwoods salamanders ( Ambystoma bishopi ), striped newt ( Notophthalmus perstriatus ), and gopher frog ( Lithobates capito ). Our objectives for this study were to develop and optimize eDNA survey protocols and assays to complement and enhance capture-based survey methods for these amphibian species. We collected three or more water samples, dipnetted or trapped larval and adult amphibians, and conducted visual encounter surveys for egg masses for target species at 40 sites on 12 different longleaf pine ( Pinus palustris ) tracts. We used quantitative PCRs to screen eDNA from each site for target species presence. We detected flatwoods salamanders at three sites with eDNA but did not detect them during physical surveys. Based on the sample location we assumed these eDNA detections to indicate the presence of frosted flatwoods salamanders. We did not detect reticulated flatwoods salamanders. We detected striped newts with physical and eDNA surveys at two wetlands. We detected gopher frogs at 12 sites total, three with eDNA alone, two with physical surveys alone, and seven with physical and eDNA surveys. We detected our target species with eDNA at 9 of 11 sites where they were present as indicated from traditional surveys and at six sites where they were not detected with traditional surveys. It was, however, critical to use at least three water samples per site for eDNA. Our results demonstrate eDNA surveys can be a useful complement to traditional survey methods for detecting imperiled pond-breeding amphibians. Environmental DNA may be particularly useful in situations where detection probability using traditional survey methods is low or access by trained personnel is limited.

Alabama, Florida, Georgia, South Carolina↗

USGS2018

What environmental conditions reduce predation vulnerability for juvenile Colorado River native fishes?

The incompatibility of native Colorado River fishes and nonnative warm-water sport fishes is well documented with predation by nonnative species causing rapid declines and even extirpation of native species in most locations. In a few rare instances native fishes are able to survive and recruit despite the presence of nonnative warm water predators, indicating that specific environmental conditions may help reduce predation vulnerability. We experimented with turbidity, artificial blue water colorant, woody debris, rocks, and aquatic vegetation in a laboratory setting to determine if any of these types of cover could reduce predation vulnerability and confer survival advantages for juvenile bonytail Gila elegans, (mean = 70 mm TL), roundtail chub Gila robusta, (mean = 35 mm TL), humpback chub Gila cypha, (mean = 67 mm TL), and razorback sucker Xyrauchen texanus (mean = 74 mm TL). Juvenile native fishes were exposed to predation by adult largemouth bass Micropterus salmoides, smallmouth bass Micropterus dolomieu, green sunfish Lepomis cyanellus, flathead catfish Pylodictis olivaris, and black bullhead catfish Ameiurus melas, in overnight trials. Turbidity above 500 NTU reduced predation vulnerability by up to 50%, for the sight-feeding predators, but increased predation vulnerability to non-sight feeding predators such as flathead catfish and bullhead catfish. Turbidity was the only treatment which appeared to significantly alter predation mortality of native prey. These results may help to explain recent patterns of wild juvenile razorback sucker recruitment at the inflow of the San Juan River into Lake Powell and the inflow of the Colorado River into Lake Mead. These are both areas of high turbidity where flathead catfish are not currently present but other nonnative sportfish are relatively abundant.

Journal of Fish and Wildlife Management↗

USGS2012

Spatial and temporal trends of freshwater mussel assemblages in the Meramec River Basin, Missouri, USA

The Meramec River basin in east-central Missouri has one of the most diverse unionoid mussel faunas in the central United States with >40 species identified. Data were analyzed from historical surveys to test whether diversity and abundance of mussels in the Meramec River basin (Big, Bourbeuse, and Meramec rivers, representing >400 river miles) decreased between 1978 and 1997. We found that over 20y, species richness and diversity decreased significantly in the Bourbeuse and Meramec rivers but not in the Big River. Most species were found at fewer sites and in lower numbers in 1997 than in 1978. Federally endangered species and Missouri Species of Conservation Concern with the most severe temporal declines were Alasmidonta viridis, Arcidens confragosus, Elliptio crassidens, Epioblasma triquetra, Fusconaia ebena, Lampsilis abrupta, Lampsilis brittsi , and Simpsonaias ambigua . Averaged across all species, mussels were generally being extirpated from historical sampling sites more rapidly than colonization was occurring. An exception was one reach of the Meramec River between river miles 28.4 and 59.5, where mussel abundance and diversity were greater than in other reaches and where colonization of Margaritiferidae, Lampsilini, and Quadrulini exceeded extirpation. The exact reasons mussel diversity and abundance have remained robust in this 30- mile reach is uncertain, but the reach is associated with increased gradients, few long pools, and vertical rock faces, all of which are preferable for mussels. Complete loss of mussel communities at eight sites (16%) with relatively diverse historical assemblages was attributed to physical habitat changes including bank erosion, unstable substrate, and sedimentation. Mussel conservation efforts, including restoring and protecting riparian habitats, limiting the effects of in-stream sand and gravel mining, monitoring and controlling invasive species, and protecting water quality, may be warranted in the Meramec River basin.

Missouri↗

USGS2013

Evidence of songbird intoxication from Rozol application at a black-tailed prairie dog colony

Concerns about avian poisonings from anticoagulant rodenticides have traditionally focused on secondary poisoning of raptors exposed by feeding on contaminated mammalian prey. However, ground foraging songbirds can be directly poisoned from operational applications of the anticoagulant rodenticide Rozol® (0.005% chlorophacinone, active ingredient) applied as a grain bait, at black-tailed prairie dog Cynomys ludovicianus colonies. A dead western meadowlark Sturnella neglecta recovered from the study prairie dog colony displayed hemorrhaging in brain and pectoral muscle tissue, and it contained chlorophacinone residue concentrations of 0.59 and 0.49 µg/g (wet weight) in the liver and intestinal contents, respectively. Chlorophacinone residues from two Rozol-colored songbird droppings found at the study colony were 0.09 and 0.46 µg/g (wet weight). The timing of the meadowlark mortality and the occurrence of discolored droppings show that songbird exposure and poisoning can occur weeks after a Rozol application.

Colorado↗

USGS2015

Effects of high salinity wastewater discharges on unionid mussels in the Allegheny River, Pennsylvania

We examined the effect of high salinity wastewater (brine) from oil and natural gas drilling on freshwater mussels in the Allegheny River, Pennsylvania, during 2012. Mussel cages (N = 5 per site) were deployed at two sites upstream and four sites downstream of a brine treatment facility on the Allegheny River. Each cage contained 20 juvenile northern riffleshell mussels Epioblasma torulosa rangiana). Continuous specific conductance and temperature data were recorded by water quality probes deployed at each site. To measure the amount of mixing throughout the entire study area, specific conductance surveys were completed two times during low-flow conditions along transects from bank to bank that targeted upstream (reference) reaches, a municipal wastewater treatment plant discharge upstream of the brine-facility discharge, the brine facility, and downstream reaches. Specific conductance data indicated that high specific conductance water from the brine facility (4,000–12,000 µS/cm; mean 7,846) compared to the reference reach (103–188 µS/cm; mean 151) is carried along the left descending bank of the river and that dilution of the discharge via mixing does not occur until 0.5 mi (805 m) downstream. Juvenile northern riffleshell mussel survival was severely impaired within the high specific conductance zone (2 and 34% at and downstream of the brine facility, respectively) and at the municipal wastewater treatment plant (21%) compared to background (84%). We surveyed native mussels (family Unionidae) at 10 transects: 3 upstream, 3 within, and 4 downstream of the high specific conductance zone. Unionid mussel abundance and diversity were lower for all transects within and downstream of the high conductivity zone compared to upstream. The results of this study clearly demonstrate in situ toxicity to juvenile northern riffleshell mussels, a federally endangered species, and to the native unionid mussel assemblage located downstream of a brine discharge to the Allegheny River.

Pennsylvania↗

USGS2017

Walleye age estimation using otoliths and dorsal spines: Preparation techniques and sampling guidelines based on sex and total length

We used dorsal spines and otoliths from 735 Walleye Sander vitreus collected from 35 Wisconsin water bodies to evaluate whether 1) otolith and dorsal spine cross sections provided age estimates similar to simpler methods of preparation (e.g., whole otoliths and dorsal spines, cracked otoliths); and 2) between-reader precision and differences between spine and otolith ages varied in relation to total length (TL), sex, and growth rate. Ages estimated from structures prepared using simpler techniques were generally similar to ages estimated using thin sections of dorsal spines and otoliths, suggesting that, in some instances, much of the additional processing time and specialized equipment associated with thin sectioning could be avoided. Overall, between-reader precision was higher for sectioned otoliths (mean coefficient of variation [CV] = 3.28%; standard error [SE] = 0.33%) than for sectioned dorsal spines (mean CV = 9.20%; SE = 0.56%). When using sectioned otoliths for age assignment, between-reader precision did not vary between sexes or growth categories (i.e., fast, moderate, slow), but between-reader precision was higher for females than males when using sectioned dorsal spines. Dorsal spines were generally effective at replicating otolith ages for male Walleye <450 mm TL and female Walleye <600 mm TL, suggesting that dorsal spines can be used to estimate ages for male Walleye <450 mm TL and female Walleye <600 mm TL. If sex is unknown, we suggest dorsal spines be used to estimate ages for Walleye <450 mm TL, but that otoliths be used for fish >450 mm TL. Our results provide useful guidance on structure and preparation technique selection for Walleye age estimation, thereby allowing biologists to develop sampling guidelines that could be implemented using information that is always (TL) or often (sex) available at the time of fish collection.

Wisconsin↗

USGS2018

Refining aging criteria for northern sea otters in Washington State

Measurement of skull ossification patterns is a standard method for aging various mammalian species and has been used to age sea otters Enhydra lutris from Russia, California, and Alaska. Cementum annuli counts have also been verified as an accurate aging method for sea otters in Alaska. In this study, we compared cementum annuli count results and skull ossification patterns as methods for aging the northern sea otter, E. l. kenyoni, in Washington State. We found significant agreement between the two methods, suggesting that either method could be used to age sea otters in Washington. We found that ossification of the squamosal–jugal suture at the ventral glenoid fossa can be used to differentiate male subadults from adults. To assist field biologists or others without access to cementum annuli or skull ossification analysis techniques, we analyzed a suite of morphologic, physiologic, and developmental characteristics to assess whether a set of these more easily accessible parameters could also predict age class. We identified tooth condition score, evidence of reproductive activity in females, and tooth eruption pattern as the most useful criteria for classifying sea otters in Washington. We created a simple decision tree based on characteristics accessible in the field or at necropsy, which can be used to reliably predict age class of Washington sea otters as determined by cementum annuli. These techniques offer field biologists and marine mammal stranding networks a replicable, cost-conscious methodology to gather useful biological information from sea otters.

Washington↗

USGS2018

Development of a species status assessment process for decisions under the U.S. Endangered Species Act

Decisions under the U.S. Endangered Species Act (ESA) require scientific input on the risk that the species will become extinct. A series of critiques on the role of science in ESA decisions have called for improved consistency and transparency in species risk assessments and clear distinctions between science input and policy application. To address the critiques and document the emerging practice of the U.S. Fish and Wildlife Service (USFWS), we outline an assessment process based on principles and practices of risk and decision analyses that results in a scientific report on species status. The species status assessment (SSA) process has three successive stages: 1) document the life history and ecological relationships of the species in question to provide the foundation for the assessment, 2) describe and hypothesize causes for the current condition of the species, and 3) forecast the species' future condition. The future condition refers to the ability of a species to sustain populations in the wild under plausible future scenarios. The scenarios help explore the species' response to future environmental stressors and to assess the potential for conservation to intervene to improve its status. The SSA process incorporates modeling and scenario planning for prediction of extinction risk and applies the conservation biology principles of representation, resiliency, and redundancy to evaluate the current and future condition. The SSA results in a scientific report distinct from policy application, which contributes to streamlined, transparent, and consistent decision-making and allows for greater technical participation by experts outside of the USFWS, for example, by state natural resource agencies. We present two case studies based on assessments of the eastern massasauga rattlesnake Sistrurus catenatus and the Sonoran Desert tortoise Gopherus morafkai to illustrate the process. The SSA builds upon the past threat-focused assessment by including systematic and explicit analyses of a species' future response to stressors and conservation, and as a result, we believe it provides an improved scientific analysis for ESA decisions.

Journal of Fish and Wildlife Management↗

USGS2018

Cumulative spring discharge and survey effort influence occupancy and detection of a threatened freshwater mussel, the Suwannee Moccasinshell

Freshwater mussels (Unionidae) are among the most imperiled groups of organisms in the world, and the lack of information regarding species distributions, life-history characteristics, and ecological and biological requirements may limit the protection of remaining mussel populations. We examined the influence of hydrologic factors on the occurrence of the Suwannee Moccasinshell Medionidus walkeri, a federally threatened freshwater mussel species, endemic to the Suwannee River Basin in Georgia and Florida. We also evaluated the influence of survey effort on detection of Suwannee Moccasinshell during field surveys. We compiled all recent (2013–2016) mussel survey records in the Suwannee River Basin. We calculated cumulative discharge contributed by upstream springs for each of 220 survey locations. We combined the spring discharge predictor variable with Suwannee Moccasinshell detection and nondetection data from each survey location to develop a suite of occupancy models. Modeling results indicated that detection of Suwannee Moccasinshell during surveys was strongly and positively related to survey effort. Modeling results also indicated that sites with cumulative spring discharge inputs exceeding ∼28 cubic meters per second were most likely (i.e., predicted occupancy probabilities >0.5) to support Suwannee Moccasinshell populations. However, occupancy declined in the lowermost reaches of the Suwannee mainstem despite high spring discharge inputs, presumably due to greater tidal influences and differences in physicochemical habitat conditions. Historical localities where Suwannee Moccasinshell has presumably been extirpated are all devoid of springs in their upstream watersheds. We hypothesize that springs may buffer extremely tannic, and at times polluted, surface waters, in addition to maintaining adequate flows during periods of drought, thereby promoting the persistence of Suwannee Moccasinshell populations. Our study suggests that springs are a critical resource for Suwannee Moccasinshell and may be more important for conservation planning than was previously recognized.

Florida↗

USGS2019

Discriminating among Pacific salmon, Rainbow Trout, and Atlantic Salmon species using common genetic screening methods

The five most common species of Pacific salmon, Rainbow Trout (steelhead) Oncorhynchus spp., and Atlantic Salmon Salmo salar intermingle in the North Pacific Ocean and its freshwater tributaries. Efficient morphological methods for distinguishing among these species are sometimes limited by condition of the specimen (degraded or missing morphology), life history stage, or training of the observer. Researchers have successfully applied various genetic methods to distinguish among these species when morphological analyses are not possible, but they cannot easily incorporate these methods into standard fish and wildlife population monitoring analysis workflows. Here we test five 5′–3′ exonuclease (TaqMan) assays developed from mitochondrial genes and provide novel methods that take advantage of TaqMan output to distinguish among these species. We found that combinations of as few as two of the five assays were adequate to distinguish all species. TaqMan chemistry is designed to interrogate a single nucleotide locus. We also explore the basis for the variation in the observed scatter plot distributions (variation in florescent signals) and show that this variation is due to nucleotide diversity in and near the probe site. Because the SNPs underlying the assays developed here are all physically close to one another along the mitochondrial genome, the potential exists to develop a single DNA sequence-based assay to discriminate among salmon species. This single assay can be added to a genotyping-by-sequencing panel to identify and exclude nontarget species from analyses.

Journal of Fish and Wildlife Management↗

USGS2012

Capture and reproductive trends in summer bat communities in West Virginia: Assessing the impact of white-nose syndrome

Although it has been widely documented that populations of cave-roosting bats rapidly decline following the arrival of white-nose syndrome (WNS), longer term reproductive effects are less well-known and essentially unexplored at the community scale. In West Virginia, WNS was first detected in the eastern portion of the state in 2009 and winter mortality was documented in 2009 and 2010. However, quantitative impacts on summer bat communities remained unknown. We compared “historical” (pre-WNS) capture records and reproductive rates from 11,734 bats captured during summer (15 May to 15 August) of 1997–2008 and 1,304 captures during 2010. We predicted that capture rates (number of individuals captured/net-night) would decrease in 2010. We also expected the energetic strain of WNS would cause delayed or reduced reproduction, as denoted by a greater proportion of pregnant or lactating females later in the summer and a lower relative proportion of juvenile captures in the mid–late summer. We found a dramatic decline in capture rates of little brown Myotis lucifugus , northern long-eared M. septentrionalis , small-footed M. leibii , Indiana M. sodalis , tri-colored Perimyotis subflavus , and hoary Lasiurus cinereus bats after detection of WNS in 2009. For these six species, 2010 capture rates were 10–37% of pre-WNS rates. Conversely, capture rates of big brown bats Eptesicus fuscus increased by 17% in 2010, whereas capture rates of eastern red bats Lasiurus borealis did not change. Together, big brown and eastern red bats were 58% of all 2010 captures but only 11% of pre-WNS captures. Reproductive data from 12,314 bats showed shifts in pregnancy and lactation dates, and an overall narrowing in the windows of time of each reproductive event, for northern-long-eared and little brown bats. Additionally, the proportion of juvenile captures declined in 2010 for these species. In contrast, lactation and pregnancy rates of big brown and eastern red bats, and the proportion of juveniles, were similar to historical patterns. Our results further elucidate the significance of short-term effects and provide a basis to examine long-term consequences of WNS.

Journal of Fish and Wildlife Management↗

USGS2018

Montane-breeding bird distribution and abundance across national parks of southwestern Alaska

Between 2004 and 2008, biologists conducted an inventory of breeding birds during May–June primarily in montane areas (>100 m above sea level) in Aniakchak National Monument and Preserve (Aniakchak NMP), Katmai National Park and Preserve (Katmai NPP), and Lake Clark National Park and Preserve (Lake Clark NPP) in southwestern Alaska. Observers conducted 1,021 point counts along 169 transects within 63 10-km × 10-km plots that were randomly selected and stratified by ecological subsection. We created hierarchical N-mixture models to estimate detection probability and abundance for 15 species, including 12 passerines, 2 galliforms, and 1 shorebird. We first modeled detection probability relative to observer, date within season, and proportion of dense vegetation cover around the point, then modeled abundance as a function of land cover composition (proportion of seven coarse-scale land cover types) within 300 m of the survey point. Land cover relationships varied widely among species but most showed selection for low to tall shrubs (0.2–5 m tall) and an avoidance of alpine and 2 dwarf shrub–herbaceous cover types. After adjusting for species not observed, we estimated a minimum of 107 ± 9 species bred in the areas surveyed within the three parks combined. Species richness was negatively associated with elevation and associated land cover types. At comparable levels of survey effort (n = 721 birds detected), species richness was greatest in Lake Clark NPP (75 ± 12 species), lowest in Aniakchak NMP (45 ± 6 species), and intermediate at Katmai NPP (59 ± 10 species). Species richness was similar at equivalent survey effort (n = 973 birds detected) within the Lime Hills, Alaska Range, and Alaska Peninsula ecoregions (68 ± 8; 79 ± 11; 67 ± 11, respectively). Species composition was similar across all three parks and across the three major ecoregions (Alaska Range, Alaska Peninsula, Lime Hills) that encompass them. Our results provide baseline estimates of relative abundance and models of abundance and species richness relative to land cover that can be used to assess future changes in avian distribution. Additionally, these subarctic montane parks may serve as signals of landscape change and barometers for the assessment of population and distributional changes as a result of warming temperatures and changing precipitation patterns.

Alaska↗

USGS2010

The aquatic turtle assemblage inhabiting a highly altered landscape in southeast Missouri

Turtles are linked to energetic food webs as both consumers of plants and animals and prey for many species. Turtle biomass in freshwater systems can be an order of magnitude greater than that of endotherms. Therefore, declines in freshwater turtle populations can change energy transfer in freshwater systems. Here we report on a mark–recapture study at a lake and adjacent borrow pit in a relict tract of bottomland hardwood forest in the Mississippi River floodplain in southeast Missouri, which was designed to gather baseline data, including sex ratio, size structure, and population size, density, and biomass, for the freshwater turtle population. Using a variety of capture methods, we captured seven species of freshwater turtles (snapping turtle Chelydra serpentina ; red-eared slider Trachemys scripta ; southern painted turtle Chrysemys dorsalis ; river cooter Pseudemys concinna ; false map turtle Graptemys pseudogeographica ; eastern musk turtle Sternotherus odoratus ; spiny softshell Apalone spinifera ) comprising four families (Chelydridae, Emydidae, Kinosternidae, Trinoychidae). With the exception of red-eared sliders, nearly all individuals captured were adults. Most turtles were captured by baited hoop-nets, and this was the only capture method that caught all seven species. The unbaited fyke net was very successful in the borrow pit, but only captured four of the seven species. Basking traps and deep-water crawfish nets had minimal success. Red-eared sliders had the greatest population estimate (2,675), density (205/ha), and biomass (178 kg/ha). Two species exhibited a sex-ratio bias: snapping turtles C. serpentina in favor of males, and spiny softshells A. spinifera in favor of females.

Missouri↗

USGS2016

Retention of riveted aluminum leg bands by wild turkeys

In order for mark–recapture models to provide unbiased estimates of population parameters, it is critical that uniquely identifying tags or marks are not lost. We double-banded male and female wild turkeys with aluminum rivet bands and estimated the probability that a bird would be recovered with both bands <1–225 wk since banding (mean = 51.2 wk, SD = 44.0). We found that 100% of females ( n = 37) were recovered with both bands. For males, we recovered 6 of 188 turkeys missing a rivet band for a retention probability of 0.984 (95% CI = 0.96–0.99). If male turkeys are double-banded with rivet bands the probability of recovering a turkey without any marks is <0.001. We failed to detect a change in band retention over time or differences between adults and juveniles. Given the low cost and high retention rates of rivet aluminum bands, we believe they are an effective marking technique for wild turkeys and, for most studies, will minimize any concern about the assumption that marks are not lost.

Journal of Fish and Wildlife Management↗

USGS2018

Designing a protected area to safeguard imperiled species from urbanization

Reserve design is a process that can address ecological, social, and political factors to identify parcels of land needed to sustain wildlife populations and other natural resources. Acquisition of parcels for a large terrestrial reserve is difficult because it typically occurs over a long timeframe and thus invokes consideration of future conditions such as climate and urbanization changes. In central Florida, a new protected area, the Everglades Headwaters National Wildlife Refuge, has been authorized by the United States Government. The new refuge will host important threatened and endangered species and habitats, as well as be located to allow for species adaptation from climate change impacts. For this study we combined habitat objectives defined by the U.S. Fish and Wildlife Service and projections from two urbanization models to provide guidance for Everglades Headwaters National Wildlife Refuge design. We used Marxan with Zones to find near-optimal solutions for protecting explicit amounts of five target habitats. We identified parcels for inclusion into the reserve design that the model allocated among two zones representing different methods of protection: fee-simple purchase (up to 20,234 hectares authorized by the United States government), and conservation easement agreements (up to 40,469 hectares authorized). As expected, for all scenarios we found an increase in costs as the proportion of fee-simple purchases was increased, reflecting the lesser cost of easements, but the number of parcels required for protection differed little among scenarios. The two urbanization models showed considerable agreement over which habitat patches were not forecast to be developed, and showed some agreement over which parcels might be developed. The U.S. Fish and Wildlife Service may benefit from focusing on parcels that are selected frequently by our analyses under both urban scenarios because these parcels are more likely to be in areas where urbanization threats and demand for land is reduced. The reserve designs we generated met U.S. Fish and Wildlife Service habitat goals within fee and easement zone restrictions, and we found reserve configurations that fell well below the mandated size limit.

Florida↗

USGS2020

Using thermal infrared cameras to detect avian chicks at various distances and vegetative coverages

Population monitoring of nesting waterbirds often involves frequent entries into the colony, but alternative methods such as local remotely sensed thermal imaging may help reduce disturbance while providing a cost-effective way to survey breeding populations. Such an approach can have high initial costs, however, which may have reduced the number of studies investigating functionality of paired thermal infrared camera and small unmanned aerial systems. Here, we take the first step of exploring the ability of two thermal infrared cameras to detect an avian chick under varying vegetative cover and distances, preceding field-mounting applications on a small unmanned aerial system. We created seven “bioboxes” to simulate a range of natural vegetation types and densities for a globally important colonial ground-nesting waterbird species, the common tern Sterna hirundo . We placed a juvenile chicken Gallus gallus (surrogate for the locally endangered common tern) in each box, and we tested two market-accessible infrared cameras (produced by FLIR Systems and Infrared Cameras, Inc.) at five elevations using a stationary boom (maximum height = 12 m). We applied computer-based digital thresholding to collected images, identifying pixels meeting one of seven threshold values. The chick was visible from at least one threshold value in 19 and 31 of 35 processed by the FLIR Systems and Infrared Cameras, respectively. Percentage of the chick identified across thresholds was generally highest at lower threshold values and elevations and decreased as elevation and threshold increased; however, the relative importance of each variable changed dramatically across bioboxes and camera types. Ability to detect a chick from processed images generally decreased with increasing elevation, and although we made no quantitative comparisons among boxes, detectability appeared greatest in images from both cameras when little or no vegetation was present. Interestingly, no single threshold value was best for all bioboxes. We observed notable differences between cameras including visual resolution of detected temperature differentials and image processing speed. Results of this controlled study show promise for the use of thermal infrared systems for detecting cryptic species in vegetation. Future research should work to combine thermal infrared and visual sensors with small unmanned aerial systems to test applicability in a mobile field application.

Journal of Fish and Wildlife Management↗