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At least 145 records · Page 8Linked to original sources

Urban landscapes can change virus gene flow and evolution in a fragmentation-sensitive carnivore

Urban expansion has widespread impacts on wildlife species globally, including the transmission and emergence of infectious diseases. However, there is almost no information about how urban landscapes shape transmission dynamics in wildlife. Using an innovative phylodynamic approach combining host and pathogen molecular data with landscape characteristics and host traits, we untangle the complex factors that drive transmission networks of Feline Immunodeficiency Virus (FIV) in bobcats ( Lynx rufus ). We found that the urban landscape played a significant role in shaping FIV transmission. Even though bobcats were often trapped within the urban matrix, FIV transmission events were more likely to occur in areas with more natural habitat elements. Urban fragmentation also resulted in lower rates of pathogen evolution, possibly owing to a narrower range of host genotypes in the fragmented area. Combined, our findings show that urban landscapes can have impacts on a pathogen and its evolution in a carnivore living in one of the most fragmented and urban systems in North America. The analytical approach used here can be broadly applied to other host-pathogen systems, including humans.

Molecular Ecology

Crustal to mantle melt storage during the evolution of Hawaiian volcanoes

As the Pacific Plate migrates over the mantle plume below Hawaiʻi, magma flux decreases, resulting in changes in eruptive volume, style, and composition. It is thought that melt storage becomes deeper and ephemeral with the transition from highly voluminous tholeiitic (shield stage) to the less voluminous alkaline (post-shield and rejuvenation stages) magmatism. To quantitatively test this, we applied high-precision fluid inclusion barometry via Raman spectroscopy to samples from representative volcanoes of different evolutionary stages. This suggests an evolution from shield-stage shallow magma storage (~1 to 2 kilometers) for Kīlauea to a post-shield stage that includes crustal magma storage within the volcanic edifice (~2 kilometers) and deeper storage below the Moho (~20 to 27 kilometers) for Haleakalā. The rejuvenation stage (Diamond Head) displays mantle-dominated storage (~22 to 30 kilometers). High melt fluxes likely form stable conduits from the mantle to a shallow reservoir in the shield volcanoes. As melt flux decreases, the Moho becomes the boundary controlling melt stagnation and evolution.

Hawaii

Speciation and stasis in marine Ostracoda: Climatic modulation of evolution

Morphologic and paleozoogeographic analysis of Cenozoic marine Ostracoda from the Atlantic, Caribbean, and Pacific indicates that climatic change modulates evolution by disrupting long-term stasis and catalyzing speciation during sustained, unidirectional climatic transitions and, conversely, by maintaining morphologic stasis during rapid, high-frequency climatic oscillations. In the middle Pliocene, 4 to 3 million years ago, at least six new species of Puriana suddenly appeared as the Isthmus of Panama closed, changing oceanographic circulation and global climate. Since then morphologic stasis has characterized ancestral and descendant species during many glacial-interglacial cycles. The frequency and duration of climatic events have more impact on ostracode evolution than the magnitude of climatic changes.

Science

Diverse aging rates in ectothermic tetrapods provide insights for the evolution of aging and longevity

Comparative studies of mortality in the wild are necessary to understand the evolution of aging; yet, ectothermic tetrapods are underrepresented in this comparative landscape, despite their suitability for testing evolutionary hypotheses. We present a study of aging rates and longevity across wild tetrapod ectotherms, using data from 107 populations (77 species) of nonavian reptiles and amphibians. We test hypotheses of how thermoregulatory mode, environmental temperature, protective phenotypes, and pace of life history contribute to demographic aging. Controlling for phylogeny and body size, ectotherms display a higher diversity of aging rates compared with endotherms and include phylogenetically widespread evidence of negligible aging. Protective phenotypes and life-history strategies further explain macroevolutionary patterns of aging. Analyzing ectothermic tetrapods in a comparative context enhances our understanding of the evolution of aging.

Science

Geologic evolution of Hess Rise, central North Pacific Ocean

Cores from four Deep Sea Drilling Project (DSDP) sites (310, 464, 465, and 466) and seismic-reflection profiles provide data that are used to interpret the geological evolution and paleoenvironments of Hess Rise, a prominent oceanic plateau in the central North Pacific Ocean. Hess Rise apparently formed in the Southern Hemisphere along the western flank of the Pacific-Farallon Ridge 110 to 100 m.y. B.P. Core stratigraphies and lithologies show the response of sedimentation to subsidence and northward movement of Hess Rise on the Pacific plate. Oceanic islands, which crowned Hess Rise during its early evolution, were eroded and subsequently subsided below sea level. Major structural trends include three northwest-trending (∼327°) arms, or ridges, and an east-northeast-trending southern Hess Rise that parallels the Mendocino Fracture Zone (060°). Normal faults offset basement as much as 3,000 m along the southern edge and 1,500 m on the western flank of Hess Rise. Many faults were active during sedimentation. Tholeiitic basalt from the base of Hole 464, trachyte from the base of Hole 465A, and alkalic basalt clasts within sediment of Hole 466 show the diversity of rock types that constitute the igneous basement. A major rock unit is middle Cretaceous limestone, chalk, and minor chert that form the basal sedimentary unit. Some limestone samples, rich in organic carbon, reflect accumulation above the carbonate compensation depth (CCD) within a mid-water oxygen minimum zone. The organic-carbon-rich sediments probably were deposited on the submarine slopes of islands and banks that were at upper bathyal depths as Hess Rise crossed the wide equatorial divergence where increased upwelling and biogenic productivity contributed to high accumulation rates. The source of organic matter was mostly lipid-rich, autochthonous, marine organic matter. Analyses of sediment samples from across the Cretaceous-Tertiary boundary at Site 465 show that there was a significant decrease in surface water temperature and biological productivity. An abrupt increase in transition metals and iridium suggests that an outside source, perhaps extraterrestrial, was the cause for many of the sudden oceanographic, geochemical, and biological changes at the boundary.

GSA Bulletin

Comparative analysis of the geological evolution of the northern and southern Appalachian orogen: Late Ordovician-Permian

Review of the major post-Middle Ordovician lithotectonic elements of the Appalachian orogen indicates that the middle to late Paleozoic geologic evolution of the Appalachian margin was less uniform than that of the early Paleozoic. Evolutionary divergence betweenthe northern and southern segments of the orogen started in the Late Ordovician to Silurian with staggered accretion of the first peri-Gondwanan elements to reach the Laurentia margin, Carolinia in the south and Ganderia in the north. Divergence was amplified duringthe Silurian, specifi cally with respect to the nature of the Laurentian margin and the history of accretion. During this time frame, the northern margin was convergent, whereas the amagmatic southern margin may well have been a transform boundary. In terms of accretion, the Late Silurian-Early Devonian docking of Avalonia was restricted to the northern segment, whereas the southern Appalachians appear to have been largely quiescent during this interval. The evolutionary paths of the two segments of the margin converge on a commonhistory in the Late Devonian during the Famennian event; we suggest that this tectonism was related to the initial marginwide interaction of Laurentia with the peri-Gondwanan blocks of Meguma and Suwanee, providing a uniform tectonic template for margin evolution. The Laurentian-Gondwanan collision is marked by second-order divergences in history. Specifi cally, during the Carboniferous, the southern segment records a larger component of shortening than the northern Appalachians. ?? 2010 Geological Society of America.

Memoir of the Geological Society of America

Laurentia in transition during the Mesoproterozoic: Observations and speculation on the ca. 1500–1340 Ma tectonic evolution of the southern Laurentian margin

An accretionary tectonic model for the Mesoproterozoic ca. 1500–1340 Ma tectonic evolution of the southern Laurentian margin is presented. The tectonic model incorporates key observations about the nature and timing of Mesoproterozoic deposition, magmatism, regional metamorphism, and deformation across the 5000-km-long southern Laurentian margin. This time period was one of transition in the supercontinent cycle and occurred between the breakup of Columbia and the formation of Rodinia, and the southern Laurentian margin was a significant component of a much greater accretionary margin extending into Baltica and Amazonia and possibly parts of Antarctica and Australia. However, fundamental questions and contradictions remain in our understanding of the tectonic evolution of Laurentia and paleogeography during this time interval.

Book chapter

Structural evolution of fault zones in sandstone by multiple deformation mechanisms: Moab fault, southeast Utah

Faults in sandstone are frequently composed of two classes of structures: (1) deformation bands and (2) joints and sheared joints. Whereas the former structures are associated with cataclastic deformation, the latter ones represent brittle fracturing, fragmentation, and brecciation. We investigated the distribution of these structures, their formation, and the underlying mechanical controls for their occurrence along the Moab normal fault in southeastern Utah through the use of structural mapping and numerical elastic boundary element modeling. We found that deformation bands occur everywhere along the fault, but with increased density in contractional relays. Joints and sheared joints only occur at intersections and extensional relays. In all locations , joints consistently overprint deformation bands. Localization of joints and sheared joints in extensional relays suggests that their distribution is controlled by local variations in stress state that are due to mechanical interaction between the fault segments. This interpretation is consistent with elastic boundary element models that predict a local reduction in mean stress and least compressive principal stress at intersections and extensional relays. The transition from deformation band to joint formation along these sections of the fault system likely resulted from the combined effects of changes in remote tectonic loading, burial depth, fluid pressure, and rock properties. In the case of the Moab fault, we conclude that the structural heterogeneity in the fault zone is systematically related to the geometric evolution of the fault, the local state of stress associated with fault slip , and the remote loading history. Because the type and distribution of structures affect fault permeability and strength, our results predict systematic variations in these parameters with fault evolution. ?? 2004 Geological Society of America.

Geological Society of America Bulletin

Introduction: CRevolution 2: origin and evolution of the Colorado River System II

A 2010 Colorado River symposium held in Flagstaff, Arizona, in May 2010, had 70 participants who engaged in intense debate about the origin and evolution of the Colorado River system. This symposium, built on two previous decadal scientific meetings, focused on forging scientific consensus where possible, while also articulating continued controversies regarding the Cenozoic evolution of the Colorado River System and the landscapes of the Colorado Plateau–Rocky Mountain region that it drains. New developments involved hypotheses that Neogene mantle flow is driving plateau tilting and differential uplift, with consensus that multidisciplinary studies involving differential incision studies and additional geochronology and thermochronology are needed to test the relative importance of tectonic and geomorphic forcings in shaping the spectacular landscapes of the Colorado Plateau region. In addition to the scientific goals, the meeting participants emphasized the iconic status of Grand Canyon for geosciences, and the importance of good communication between the research community, the geoscience education/interpretation community, the public, and the media. Building on a century-long tradition, this region still provides a globally important natural laboratory for studies of the interactions of erosion and tectonism in the shaping landscape of elevated plateaus.

Arizona;Colorado;New Mexico;Utah

Evolution of Miocene normal and dextral faulting in the lower Colorado River region near Blythe, California, USA

The evolution of strain in nascent continental plate boundaries commonly involves distributed deformation and transitions between different styles of deformation as the plate boundary matures. Distributed NW-striking faults, many with km-scale right-lateral separation, are prevalent near Blythe, California, and have been variably interpreted to have accommodated either Middle Miocene NE-SW extension as normal faults or Late Miocene to Pliocene dextral shear as strike-slip faults. However, with poor timing and kinematic constraints, it is unclear how these faults relate to known domains of Neogene deformation and the evolution of the Pacific–North America plate boundary. We present kinematic data (n = 642 fault planes, n = 512 slickenlines) that demonstrate that these faults dominantly dip steeply northeast; ~96% of measured faults record normal, dextral, or oblique dextral-normal kinematics that likely reflect a gradational transition between normal and dextral oblique kinematic regimes. We constrain fault timing with 11.7 Ma and 7.0 Ma 40 Ar/ 39 Ar dates of rocks cut by faults, and laser ablation–inductively coupled plasma–mass spectrometry U-Pb dating of calcite mineralized during oblique dextral faulting that demonstrates fault slip at ca. 10–7 Ma and perhaps as late as ca. 4 Ma. This Late Miocene dextral oblique faulting is best compatible with a documented regional transition from Early to Middle Miocene NE-directed extension during detachment fault slip to subsequent NW-directed dextral shear. We estimate 11–38 km of cumulative dextral slip occurred across a 50-km-wide zone from the Palen to Riverside mountains, including up to 20 km of newly documented dextral shear that may partly alleviate the regional discrepancy of cumulative dextral shear along this part of the Late Miocene Pacific–North America plate boundary.

California

Oligocene–Miocene development and evolution of the south Dome Rock Mountains basin, lower Colorado River corridor, Arizona, USA

Sedimentary basins in the Colorado River extensional corridor record large-magnitude Basin and Range extension and younger dextral shear deformation in the evolving Pacific−North America plate boundary. The south Dome Rock Mountains basin is located in west-central Arizona (USA), where the history of basin evolution, style of deformation, and timing of the transition between extension and dextral shear are not well constrained. We integrate new geologic mapping of the south Dome Rock Mountains basin with zircon U-Pb geochronology of six marker beds to characterize the timing of basin evolution and the slip history of the south Dome Rock Mountains normal fault. Structural analysis defines structures consistent with regional extension and younger dextral shear deformation. We use sedimentological and petrological analysis to interpret the depositional environments of three basin sequences. A lower basin sequence consists of fluvial strata deposited in an internally drained intermontane basin from ca. 35 Ma to 24.4 Ma. A sequence of volcanic rocks was emplaced in the basin between 24.4 Ma and 23.3 Ma, before the onset of local extensional faulting. An upper basin sequence of coarse conglomerate and sedimentary breccia was deposited on the hanging wall of a half graben structure after 23.3 Ma and through ca. 12.8 Ma, synchronous with 3−7 km of dip slip on the west-dipping, listric south Dome Rock Mountains fault. The basin was subsequently deformed by dextral shear after 12.8 Ma and before 4.8 Ma. These results document how distributed deformation related to the evolving Pacific−North America plate boundary occurred >100 km from the primary plate boundary.

Arizona, California

The evolution of natural and developed barriers under accelerating sea levels

Communities residing on barrier islands depend upon the ability of barriers to withstand forcings such as waves, sea-level rise, and storms, particularly under stresses from climate change. Using a barrier island evolution model, we compare barrier response to linear versus accelerating sea-level rise. Results suggest that barriers are more likely to drown under accelerating rather than linear sea-level rise. The dominant style of barrier drowning also shifts from width drowning to height drowning. When our model of barrier evolution is coupled with a myopic economic decision-making model for beach nourishment and managed retreat, the general coastal management behavior is unchanged. However, the timing and position at which interventions are made differ. Therefore, decisions based on the assumption of constant sea-level rise rates rather than increasing rates may result in actions that are detrimental to communities and potentially reduce the barrier’s ability to maintain its subaerial landform.

Conference Paper

Nearshore bathymetric evolution on a high-energy beach during the 2009-10 El Nino winter

The nearshore bathymetric evolution of a high-energy beach at the mouth of San Francisco Bay, California (USA), was tracked before, during, and after the powerful El Niño winter of 2009-10 to quantify alongshore bar formation and migration as well as the magnitude and alongshore variability of cross-shore transport. The observed deep-water winter wave energy was among the highest ever recorded in Northern California, peaking during a 7 day period in the middle of January 2010 with a mean deep-water significant wave height ( H s ) of 5.5 m, and a maximum H s = 9 m . The extreme forcing during the study period resulted in local bed level changes that approached 5 m, cross-shore bar migration of > 250 m, ~3 m alongshore trough deepening, and a net gain of ~1.6 million m 3 of sediment to the nearshore profile over the 7 km alongshore extent of the survey area, leaving beach sand levels severely depleted. The morphological evolution observed during this El Niño winter may serve as a proxy for future coastal response to climate change if current trends of increased storminess continue for the U.S. West Coast.

California

Offshore sand-shoal development and evolution of Petit Bois Pass, Mississippi-Alabama Barrier Islands, Mississippi, USA

Assessment of recently collected geophysical and sediment-core data identifies an extensive shoal field located off Dauphin and Petit Bois Islands. The shoals are the product of Pleistocene fluvial deposition and Holocene marine-transgressive processes, and their position and orientation oblique to the modern shoreline has been stable over the past century. The underlying stratigraphy has also influenced the evolution of the barrier platform and inlets. Buried distributary channels bisect the platform, creating erosion hotspots that breach during intense and repeated storms. Inlet growth inhibits littoral transport, and over time, reduces the down-drift sand supply. These relations demonstrate the role of the antecedent geologic framework on morphologic evolution. This study is part of the USGS Northern Gulf of Mexico Ecosystem Change and Hazard Susceptibility Project and the USACE Mississippi Coastal Improvements Program. These projects produced a wealth of information regarding coastal geology, geomorphology, and physical resources; some of the initial results are presented here.

Alabama;Mississippi

Tectonic evolution of the Central Andean Plateau and implications for the growth of plateaus

Current end-member models for the geodynamic evolution of orogenic plateaus predict ( a ) slow and steady rise during crustal shortening and ablative subduction (i.e., continuous removal) of the lower lithosphere or ( b ) rapid surface uplift following shortening, which is associated with punctuated removal of dense lower lithosphere and/or lower crustal flow. This review integrates results from recent studies of the modern lithospheric structure, geologic evolution, and surface uplift history of the Central Andean Plateau to evaluate the geodynamic processes involved in forming it. Comparison of the timing, magnitude, and distribution of shortening and surface uplift, in combination with other geologic evidence, highlights the pulsed nature of plateau growth. We discuss specific regions and time periods that show evidence for end-member geodynamic processes, including middle–late Miocene surface uplift of the southern Eastern Cordillera and Altiplano associated with shortening and ablative subduction, latest Oligocene–early Miocene and late Miocene–early Pliocene punctuated removal of dense lower lithosphere in the Eastern Cordillera and Altiplano, and late Miocene–early Pliocene crustal flow in the central and northern Altiplano.

Annual Review of Earth and Planetary Sciences

Magmatic evolution of the Gulf of California rift

Magmatic events in the Baja peninsula-Gulf of California region are closely related to sequential tectonic regimes of: (1) late Tertiary subduction beneath the continental margin until ~16 to 12.5 Ma; and (2) continental to oceanic rifting that began about 13 Ma. Orogenic calcalkaline volcanic rocks formed subparallel belts of rhyolite ignimbrite of Oligocene age (~34 to 27 Ma) east of the Gulf in the Sierra Madre Occidental and andesite of Miocene age (~24 to 11 Ma) along the eastern Baja peninsula. Shutoff of the Miocene andesitic arc broadly corresponds to migration of the Pacific-Farallon (Guadalupe)-North America triple junction along the Baja peninsula. Orogenic andesitic volcanism ended at ~16 Ma in northern Baja, and at ~11 Ma in southern Baja, within ~1 to 2 Ma of cessation of subduction. Waning orogenic magmatism persisted along the southern Baja peninsula during the initial stages of rifting. Paleogeographic implications of the distribution of circum-Gulf volcanic rocks and their inferred easterly source areas suggest that, from about 13 to 8 Ma, the rift consisted of a narrow seaway along the eastern side of the present Gulf. By about 6 Ma, the Gulf had broadened westward to approximately its present width. The period from 13 to 10 Ma was a time of tectonic transition and magmatic diversity. During this interval, medium-K calcalkaline, high-K calcalkaline, alkalic, and tholeiitic magmas erupted from the central to southern part of the Baja peninsula-Gulf region, and from about 14 to 8 Ma, rhyolite ignimbrite erupted in the northern Gulf region. Since 10 Ma, volcanism on the western Baja peninsula has been dominated by alkalic magmas, the Gulf margins by calcalkaline magmas, and the Gulf by tholeiitic magmas. Postsubduction calcalkaline andesite to rhyolite erupted sporadically and locally along the northern Gulf margins from ~9 Ma through Holocene time. Alkalic magmas associated with rifting in the Gulf of California are unlike alkalic magmas from intraplate settings. They comprise nepheline- to quartz-normative, basaltic to andesitic rocks characterized by diverse trace element ratios. They are broadly similar to intraplate alkalic rocks in having high K, P, Ba, Sr and the light REE (rare earth elements), but have some trace element characteristics typical of orogenic magmas (low Nb and Ta relative to K, Ba, Sr, and La) that distinguish these alkalic rocks from intraplate or cratonic rift alkalic rocks. Rb abundances (mostly <25 ppm, as low as 5 ppm) are unusually low in these alkalic rocks, both in contrast to the high K (~1.7-4.1 wt% K 2 O), Ba (~800-2200 ppm), and Sr (~1000-3700 ppm), and in comparison to Rb abundances in mafic lavas in general; many samples have Rb at levels typically found in low-K tholeiites. The high K/Rb ratios, mostly ~1000 to 5000, are among the highest reported for any lavas. Samples ranging in SiO 2 from 48 to 61% have Mg’ ≥ 65, indicating that a broad range of compositions may represent primary melts. The generally high Mg’, and the low Rb, Th, Nb, and Ta in some lavas, suggest that depleted refractory mantle equivalent to a mid-ocean ridge basalt (MORB) source contributed to these melts. The distinctive trace element enrichments are attributed to the stabilization in the source of amphibole and apatite from metasomatic fluids related to prior subduction beneath the peninsula. In discrimination diagrams, these alkalic rocks typically cluster outside previously defined fields for various magma types. The common tectonic setting among these and geochemically similar alkalic suites is the occurrence in a continental margin that is undergoing extension, located along a recently or currently active convergent plate boundary. Tholeiitic basalts have erupted since the earliest stages of continental rifting through development of oceanic spreading centers. Gulf of California tholeiites exhibit an evolution distinguished particularly by differences in rare-earth-element (REE) abundances. Early-rift magmas are similar in trace element geochemistry to some intraplate tholeiites from ocean islands and continental flood basalts, and have convex-upward REE patterns. The most recent tholeiites from the East Pacific Rise in the mouth of the Gulf are equivalent to N-MORB (normal mid-ocean ridge basalt) from other mid-ocean rifts, and are depleted in the light-REE. The transition in tholeiite geochemistry from intraplate tholeiite to MORB is attributed to progressive fusion of more refractory mantle components. Incipient-rift tholeiites are derived from selective fusion of clinopyroxenite veins, and with continued melting, N-MORB are formed by fusion of peridotite. This tholeiite sequence reflects the evolution of mantle source regions in rifts that sustain an ensialic to oceanic transition.

Baja California, Baja California Sur

Virulence evolution of a salmonid virus following a host jump

Emergent viral diseases remain a critical obstacle to welfare across landscapes and species, encompassing humans, wildlife, and agriculture. Following a jump to a novel host, the severity of disease resulting from infection is a critical determinant of the overall emergent pathogen threat. Conventional wisdom posits that virulence, defined here as host mortality, attenuates to intermediate levels as a pathogen adapts to a novel host, but this is largely based on data from just one system, myxoma virus, which was intentionally introduced as a biocontrol agent in rabbits ( Oryctolagus cuniculus ) in mid-1900s Australia. In this study, we demonstrate that infectious hematopoietic necrosis virus (IHNV), which made a host jump from sockeye salmon ( Oncorhynchus nerka , ancestral host) to rainbow trout ( O. mykiss , novel host), has not conformed to classical theory. We quantified virulence in the ancestral and novel hosts using common garden in vivo experiments with 16 archival IHNV isolates collected from 1972-2017, which span the period from shortly after the host jump and the subsequent 45 years of host adaptation. These virus isolates also represent two distinct phylogenetic genogroups, each associated with either the ancestral or novel host. The experiments were replicated across two research facilities, two challenges dosages, and two temperatures. While isolates from the ancestral genogroup showed no temporal change in virulence in either host, isolates from the novel viral genogroup displayed a significant increase in virulence over time in the novel host. Some possible indication of a virus temperature adaption after the host jump was also present. Potential drivers of virulence evolution are discussed. This represents one of only a handful of systems in which the evolution of increased virulence has been empirically characterized after a host jump and subsequent adaptation. It contributes to a growing body of evidence that contradicts the classical case study of myxoma virus attenuation after adaptation.

PLoS Pathogens

Morphological diversity and evolution of egg and clutch structure in amphibians

The first part of this synthesis summarizes the morphology of the jelly layers surrounding an amphibian ovum. We propose a standard terminology and discuss the evolution of jelly layers. The second part reviews the morphological diversity and arrangement of deposited eggs?the ovipositional mode; we recognize 5 morphological classes including 14 modes. We discuss some of the oviductal, ovipositional, and postovipositional events that contribute to these morphologies. We have incorporated data from taxa from throughout the world but recognize that other types will be discovered that may modify understanding of these modes. Finally, we discuss the evolutionary context of the diversity of clutch structure and present a first estimate of its evolution.

Herpetological Monographs